references - hthesis

7/24/2019 References - Hthesis

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References:

1) Han, Y. W., Shi, W., Huang, G. T. J., Haake, S. K., Park, N. H., Kuramitsu, H., & Genco, R. J. (2!."nteractions #et$een %erioonta' #acteria an human ora' e%ithe'ia' ce''s )uso#acterium nuc'eatumaheres to an in*aes e%ithe'ia' ce''s. Infection and Immunity, 68(+!, -/-+.

2) 0o'sta, 1. "., Jensen, H. 0., & 0akken, . (-33+!. Ta4onom5, #io'og5, an %erioonta' as%ects o6

)uso#acterium nuc'eatum. Clinical microbiology reviews,9(-!, 77/8-.3) Rickar, 1. H., Gi'#ert, P., High, N. J., Ko'en#raner, P. 9., & Han'e5, P. S. (2!. 0acteria'coaggregation an integra' %rocess in the e*e'o%ment o6 mu'ti/s%ecies #io6i'ms. Trends inmicrobiology, 11(2!, 3/-.

4) Karatan, 9., :uncan, T. R., & Watnick, P. ". (27!. Ns%S, a %reicte %o'5amine sensor, meiatesacti*ation o6 i#rio cho'erae #io6i'm 6ormation #5 nors%ermiine. Journal of bacteriology, 187(2-!,8/8.

5) Rickar, 1. H., Gi'#ert, P., High, N. J., Ko'en#raner, P. 9., & Han'e5, P. S. (2!. 0acteria'coaggregation an integra' %rocess in the e*e'o%ment o6 mu'ti/s%ecies #io6i'ms. Trends inmicrobiology, 11(2!, 3/-.

6) 0rasha$, :a*i J., et a'. ;Ro'e o6 )uso#acterium nuc'eatum an coaggregation in anaero#esur*i*a' in %'anktonic an #io6i'm ora' micro#ia' communities uring aeration.; Infection and

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8) Te'es, ). R., Te'es, R. P., >?e', N. G., Song, @. A., Torres5a%, G., Socransk5, S. S., & Ha66aBee, 1. :.(2-2!. 9ar'5 micro#ia' succession in ree*e'o%ing enta' #io6i'ms in %erioonta' hea'th anisease. Journal of !eriodontal researc", #7(-!, 37/-.

9) Han, Y. W., Shi, W., Huang, G. T. J., Haake, S. K., Park, N. H., Kuramitsu, H., & Genco, R. J. (2!."nteractions #et$een %erioonta' #acteria an human ora' e%ithe'ia' ce''s )uso#acterium nuc'eatumaheres to an in*aes e%ithe'ia' ce''s. Infection and Immunity, 68(+!, -/-+.

10) HaBishenga''is, G., Ciang, S., Pa5ne, D. 1., Hashim, 1., Jot$ani, R., 9skan, D. 1., ... & =urtis, D.1. (2--!. Co$/a#unance #io6i'm s%ecies orchestrates in6'ammator5 %erioonta' isease throughthe commensa' micro#iota an com%'ement. Cell "ost $ microbe, 1%(7!, 38/7+.

11) Pate', =. N., Wortham, 0. W., Cines, J. C., )etherston, J. :., Perr5, R. :., & E'i*eira, D. 1. (2+!.

Po'5amines are essentia' 6or the 6ormation o6 %'ague #io6i'm. Journal of bacteriology, 188(8!, 277/2+.

12) Wortham, 0. W., E'i*eira, D. 1., )etherston, J. :., & Perr5, R. :. (2-!. Po'5amines are reFuire6or the e4%ression o6 ke5 Hms %roteins im%ortant 6or Yersinia %estis #io6i'm 6ormation. &nvironmentalmicrobiology, 1'(8!, 2/28.

13) Karatan, 9., & Dichae', 1. J. (2-!. 1 $ier ro'e 6or %o'5amines in #io6i'm6ormation. (iotec"nology letters, )*(--!, -8-7/-8-8.

14) Karatan, 9., :uncan, T. R., & Watnick, P. ". (27!. Ns%S, a %reicte %o'5amine sensor, meiatesacti*ation o6 i#rio cho'erae #io6i'm 6ormation #5 nors%ermiine. Journal of bacteriology, 187(2-!,8/8.

15) 0urre'', D., Han6re5, =. =., Durra5, 9. J., Stan'e5/Wa'', N. R., & Dichae', 1. J. (2-!. 9*o'utionan mu'ti%'icit5 o6 arginine ecar#o45'ases in %o'5amine #ios5nthesis an essentia' ro'e in 0aci''us

su#ti'is #io6i'm 6ormation. Journal of (iological C"emistry, '8*(7!, 322/32


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19) Kashi$agi, K., Su?uki, T., Su?uki, )., )uruchi, T., Ko#a5ashi, H., & "garashi, K. (-33-!.=oe4istence o6 the genes 6or %utrescine trans%ort %rotein an ornithine ecar#o45'ase at -+ min on9scherichia co'i chromosome. Journal of (iological C"emistry, '66(-!, 2322/2328.

20) Kanehisa, M., Goto, S., Sato, Y., Kawashima, M., Furumichi, M., and Tanabe, M.; Data,information, now!ed"e and #rinci#!e$ bac to metabo!ism in K%GG. &uc!eic 'cids (es. 2,

D*++D20- 20*). /#ubmed /#df

2*) Kanehisa, M. and Goto, S.; K%GG$ K1oto %nc1c!o#edia of Genes and Genomes. &uc!eic 'cids (es.2, 23450 2000). /#ubmed /#df

22) 67'ST 4 Ste#hen F. '!tschu!, Thomas 7. Madden, '!e8andro '. Sch9ffer, :in"hui han", hen"

han", Ga##ed 67'ST and ?S@467'ST$ a new "eneration of

#rotein database search #ro"rams>, &uc!eic 'cids (es. 2-$55+4502.

25) Ste#hen F. '!tschu!, :ohn A. , F%6S :. 232$-*0*4-*0+.

24) Jenkinson, =. P., Gro5, W. W., & =eer#aum, S. :. (-33+!. =om%arati*e %ro%erties o6arginases. Com!arative (ioc"emistry and -"ysiology -art (. (ioc"emistry and olecular(iology, 11#(-!, -8/-2.

25) 1sh, :. 9. (2!. Structure an 6unction o6 arginases. T"e Journal of nutrition,1)#(-!, 28+S/28+S.

26) Doman5, =or5, et a'. ;=r5sta''ogra%hic structure o6 a PCP/e%enent ornithine ecar#o45'ase6romCacto#aci''usa to . reso'ution.; Journal of molecular biology272.7 (-337! +/+77.

27) Chattopadhyay, M. K., C. W. Tabor, and H. Tabor.2003. Polyamines protect Escherichia

colicells from the toic e!ect of oy"en. Proc. #atl. $ca%. &ci. '&$ 100:2261(2265.

28) Ci, @., & =o66ino, P. (-332!. Regu'ate egraation o6 ornithine ecar#o45'ase reFuires interaction$ith the %o'5amine/inuci#'e %rotein anti?5me. olecular and cellular biology, 1'(

29) Jackson, C. K., 0rooks, H. 0., Esterman, 1. C., Go'smith, 9. J., & Phi''i%s, D. 1. (2!. 1'teringthe reaction s%eci6icit5 o6 eukar5otic ornithine ecar#o45'ase. (ioc"emistry, )9(8!, --28/--278.

30) 1'mru, J. J., E'i*eira, D. 1., Kern, 1. :., Grishin, N. ., Phi''i%s, D. 1., & Hackert, D. C. (2!.

=r5sta' structure o6 human ornithine ecar#o45'ase at 2.- reso'ution structura' insights toanti?5me #ining. Journal of molecular biology, '9*(-!, 8/-+.

31) Kern, 1. :., E'i*eira, D. 1., =o66ino, P., & Hackert, D. C. (-333!. Structure o6 mamma'ian ornithineecar#o45'ase at -.+ reso'ution stereochemica' im%'ications o6 PCP/e%enent amino aciecar#o45'ases. ,tructure, 7(7!, 7+8/72L)0Pase/2 maker an #reaker o6 the essentia' #io6actor 6ructose/2, +/#is%hos%hate. Trends inbioc"emical sciences, '6(-!, /7.

36) HaBishenga''is, G., Ciang, S., Pa5ne, D. 1., Hashim, 1., Jot$ani, R., 9skan, D. 1., ... & =urtis, D.1. (2--!. Co$/a#unance #io6i'm s%ecies orchestrates in6'ammator5 %erioonta' isease throughthe commensa' micro#iota an com%'ement. Cell "ost $ microbe, 1%(7!, 38/7+.

37) Esterman, 1. C., 0rooks, H. 0., Jackson, C., 1##ott, J. J., & Phi''i%s, D. 1. (-333!. C5sine/+3 %'a5s ake5 ro'e in cata'5sis #5 ornithine ecar#o45'ase through acce'eration o6 the Schi66 #ase 6ormation,ecar#o45'ation, an %rouct re'ease ste%s. (ioc"emistry, )8(+!, --


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38) Grishin, N. ., Esterman, 1. C., 0rooks, H. 0., Phi''i%s, D. 1., & Go'smith, 9. J. (-333!. @/ra5structure o6 ornithine ecar#o45'ase 6rom Tr5%anosoma #rucei the nati*e structure an the structurein com%'e4 $ith M/i6'uorometh5'ornithine.(ioc"emistry, )8(+!, -7-8/-7-

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