RCSB  Protein  Data  Bank  

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Founded in 1998

Rutgers, The State University of New Jersey •  Data deposition & annotation

UC San Diego, San Diego Supercomputer Center •  Data dissemination (rcsb.org)

Query, analysis, visualization, web services, data download

wwPDB  

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Wellcome Trust, EU, CCP4, BBSRC, MRC, EMBL

NLM BIRD-JST, MEXT

NSF, NIGMS, DOE, NLM, NCI, NINDS, NIDDK

wwPDB formed in 2003 •  Defines data and validation standards •  Collects, annotates, validates and disseminates PDB data

RCSB  PDB  West  Team  §  Science: structural and

computational biology, structural bioinformatics, chemoinformatics, genomics, drug design, scientific software development, research grants

§  Software: web design, user experience design, database design, web services, big data, open source development

§  Systems: hardware, networking, virtualization, cloud computing, data management

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Scientists, software engineers, postdocs, students

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Growing  User  Base  

Open  Source  Software  Development  

§ BioJava  (Sequence  and  Structure  modules)  §  https://github.com/biojava  

§ RCSB  PDB  SpeciNic  Software  §  https://github.com/rcsb    

§ Macromolecular  Transmission  Format  (MMTF)  §  http://mmtf.rcsb.org  

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