segmentation

9
Segmentation outward inward

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Segmentation. outward. inward. Three Conformations. pre-power stroke state in smooth muscle (PDB - 1BR1). pre-power stroke state in scallop muscle (PDB - 1 QVI). Myosin-V with ADP (PDB - 1W7I). F-actin. CC= 0.64. CC= 0.58. CC= 0.53. CC= 0.41. CC= 0.42. CC= 0.42. - PowerPoint PPT Presentation

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Page 1: Segmentation

Segmentation

outward

inward

Page 2: Segmentation

Three Conformations

Myosin-V with ADP (PDB - 1W7I)

pre-power stroke state in scallop muscle (PDB - 1QVI)

F-actin

pre-power stroke state in smooth muscle (PDB - 1BR1)

Page 3: Segmentation

CC= 0.64 CC= 0.53

CC= 0.42

CC= 0.58

CC= 0.42CC= 0.41

outward

inward

Docking by SITUS (colores)

ADPmyosin-V

Scallop-like pre-power stroke

smooth muscle-like pre-power stroke

Page 4: Segmentation

outward

inward

ADPmyosin-V

Scallop-like pre-power stroke

smooth muscle-like pre-power stroke

Docking by SITUS (colores)

CC= 0.64 CC= 0.53

CC= 0.42

CC= 0.58

CC= 0.42CC= 0.41

Page 5: Segmentation

CC= 0.64outward

Docking by SITUS (myoV-ADP)

ADPmyosin-V

Page 6: Segmentation

CC= 0.82outward

Normal Mode Flexible Fitting (myoV-ADP)

ADPmyosin-V

Page 7: Segmentation

CC= 0.58

Docking by SITUS (scallop-like)

outward

Scallop-like pre-power stroke

Page 8: Segmentation

CC= 0.77

Normal Mode Flexible Fitting (scallop-like)

outward

Scallop-like pre-power stroke

Page 9: Segmentation

Fitted “scallop-like” on F-actin

F-actin F-actin Myosin-V with ADP (PDB - 1W7I)

pre-power stroke state in scallop myosin (PDB - 1QVI)

pre-power stroke state in smooth muscle myosin (PDB - 1BR1)