sequencing and the gisaid epiflu...
TRANSCRIPT
Sequencing and the GISAID EpiFluTM Database
Naomi Komadina www.influenzacentre.org
EpiFlu Database training activities:
How to customise search results settings
How to search in GISAID
How to upload data to GISAID
How to retrieve sequences from the GISAID database (download)
How to blast a sequence
How to align sequences
How to create preliminary phylogenetic trees
How to download sequences & meta data
How to download an acknowledgement table
Enter and
search in
GISAID
database
Upload your
sequences Tools
BLAST
Alignments
phylogenetic
analyses
downloads
Customise
your
search
results in
the
database
Create a
workset
Customise Settings
Search Functions
“A/Sydney/5/1997” “ A/South Australia/55/2014”
Search Results
Single Upload -1
Isolate
information
Sample & host
information
Institute
information
Single Upload -2
antiviral
information
Antigenic
characterisation
Single Upload -3
Unique identifier
Select gene
Add sequence
Select Select
Isolate meta data
Acknowledgement Table
Acknowledgements
Bioinformatics Institute, A*STAR,
Singapore
GISAID Database Technical Group
Berlin, Germany
The WHO Collaborating Centre for Reference & Research is supported
by the Australian Government Department of Health