si-rna delivery
TRANSCRIPT
Gene Delivery Slide 1 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA DeliveryAn Approach to Cancer Therapy
Gene Delivery Slide 2 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Definitions
Gene therapy refers to the transmission of nucleic acid (DNA and RNA) encoding a therapeutic gene of interest into the targeted cells or organs with consequent expression of the transgene
Gene Delivery is the process of introducing foreign genetic material into host cellsIn other words Gene Delivery is a key step to gene therapy
A Gene Delivery System (GDS) is a special purpose conjugate that consists of carry-over material and nucleic acids (payload)
Gene Delivery Slide 3 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Therapy ApproachesSeveral Approaches may be used for correcting faulty
genesndash A normal gene may be inserted into the genome to compensate
for nonfunctional gene (the most common approach)ndash An abnormal gene is replaced for a normal genendash The abnormal gene could be repaired through selective reverse
mutationndash The regulation of a gene expression could be altered
Gene Delivery Slide 4 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Barriers to Gene Delivery In order to deliver genes into cell nucleus several barriers need to
be overcome
Extracellular barriersndash Nucleasesndash Plasma Proteins (aggregation)ndash Immune systemndash Glomerular filtration
Cellular barriersndash Cell Membranendash Endolysosomal entrapmentndash Cytosolic Sequestrationndash Nuclear Exclusion
Gene Delivery Slide 5 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene Delivery Off-target Effect
siRNAs are capable of reducing expression of nontarget genes due to interaction of the siRNA guide strand with a partially complementary site on an ldquooff-targetrdquo mRNA
Careful selection of siRNA sequences to avoid off-target effects is an important issue
Gene Delivery Slide 6 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene Delivery Immune stimulation
Innate immune activation is a significant undesirable side effect due to the toxicities associated with excessive cytokine release
The inflammatory response is mediated by toll-like receptors (TLRs) which are located in endosome compartments and recognize unmethylated CpG DNA as well as various moieties in double-stranded RNA or their degraded products
TLR-mediated recognition and concomitant immune stimulation can be inhibited by chemical modifications such as introduction of 2prime-O-methyl (2primeOMe)-modified nucleotides
Gene Delivery Slide 7 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliverySerum inactivation and enzyme degradation
Naked genetic material are rapidly degraded by nuclease in the serum
2prime-hydroxyl group of the ribose ring is not necessary for gene silencing by siRNAs common modifications are 2prime-fluoro 2prime-O-methyl and 2prime-amine conjugations
Naked genetic material lack specific tumor targeting and would be quickly excreted by the kidney upon systemic administration
Gene Delivery Slide 8 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryRES Recognition
In order to condense negatively charged nucleic acids into delivery vehicles most vehicles are cationic
The positive charge aids cellular uptake but also promotes nonspecific interactions with non target cells and extracellular components such as serum proteins and extracellular matrix
Binding of proteins is the primary mechanism for RES recognition
The most common way to decrease nonspecific interactions is to shield the nanoparticle surface with hydrophilic uncharged polymers such as polyethylene glycol (PEG)
Gene Delivery Slide 9 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEntrance Into Cells
Delivery systems that are not degraded phagocytosed or cleared by the kidney must leave the bloodstream by traversing the endothelium to reach other tissues This occurs most readily in tissues whose endothelia are discontinuous (fenestrated) such as the liver and many solid tumours
Most siRNA delivery systems undergo cellular internalization through endocytosis
Various delivery systems aim to improve the rate of cellular uptake by incorporating targeting ligands that bind specifically to receptors on target cells to induce receptor-mediated endocytosis
Other systems use cell-penetrating peptides that can induce cell uptake through endocytosis or non-endocytic mechanisms
Gene Delivery Slide 10 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEntrance Into Cells
Commonly used targeting ligands include ndash Aptamersndash Cell penetrating peptidesndash Antibodiesndash Peptides or proteinsndash Small molecule ligands
Gene Delivery Slide 11 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEndosome Escape
The delivery of nonviral gene vehicles almost invariably involves endocytosis and escaping from endosomes before they traffic into lysosomes is an essential step to avoid enzymatic degradation
Cationic lipid complexes can bind to anionic lipids on the endosome membrane and form neutral ion pairs These ion-pairs destabilize the endosome membrane and promote de-assembly of the lipoplex
Polymers and peptides with high buffer capacity between pH 72 and 50 such as PEI or peptides containing the cationic amino group lysine arginine and histidine could buffer the endosome This would cause more protons to enter into the endosomes followed by chloride ions leading to increased osmotic pressure and endosome rupture (ldquoproton sponge effectrdquo)
Stimuli other than pH have been used to destabilize endosome membranes Lipid or polymer derivatives which are sensitive to sulfhydryl reduction and enzymatic cleavage have been used to construct nonviral gene vectors
Gene Delivery Slide 12 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEndosome Escape
Gene Delivery Slide 13 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
The final target destination of antisense oligonucleotides siRNAmiRNA and mRNA is the cytoplasm whereas pDNA must be transported into the nucleus for gene expression
Nuclear transport generally occurs through nuclear pore complexes(NPCs) however nucleic acid condensates are impermeable through nuclear pore complexes due to their large size
In dividing cells the nuclear envelope disassembles during mitosis pDNA transfection can only occur at this stage
For nondividing cells the mechanisms of DNA nuclear transport are of critical importance
Gene Delivery Slide 14 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nuclear Pore Complex
Gene Delivery Slide 15 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
The NPC is freely permeable to small molecules metabolites and ions but acts as a highly efficient molecular sieve for macromolecules
Transport of almost all macromolecules into and out of the nucleus is achieved requires the assistance of soluble nuclear transport factors (NTFs) and transport signals
The NTFs specifically bind transport signals found on their cognate substrates and translocate them through the NPC channel
The best-studied transport signals are found on nuclear protein cargoes Such signals consist of short amino acid sequences called nuclear localization sequences (NlSs for import) or nuclear export sequences (NESs for export)
Nuclear Pore Complex
Gene Delivery Slide 16 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
To facilitate nuclear targeting many nuclear localization signal (NLS) peptides have been studied to allow DNA nuclear entry through nuclear pore complexes by active transport
NLSs are short clusters of amino acids that can bind to cytoplasmic receptors known as importins NLS peptides can bind to DNA either through noncovalent electrostatic interaction or by covalent attachment
The most well-known and popularly used NLS is from the large tumor antigen of simian virus 40 (SV40)
Some DNA sequences themselves have nuclear import activity based on their ability to bind to cell-specific transcription factors
Gene Delivery Slide 17 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Systems The most important and most difficult challenge in gene therapy is
the issue of delivery
Not only must the therapy evade the RES as it circulates after systemic administration but it must also cross several barriers before it arrives in the cytoplasm or nucleus of its target cells
So there is a need to develop a safe and efficient gene transfection therapy system
Carry-over material of a GDS can pass through the cell membrane and in some instances enter the nucleus
Carry-over material are called vectors
Gene Delivery Slide 18 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Vectors
A vector can be described as a system fulfilling several functions including
ndash Enabling delivery of genes into the target cells and their nucleus ndash Providing protection from gene degradationndash Ensuring gene transcription in the cell
Gene therapy vectors should not only be targeted and safe but also protected from degradation sequestration or immune attack
However it has to be inexpensive and easy to produce and purify in large amounts and at high concentrations
Gene Delivery Slide 19 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Categorization
Gene delivery systems can be classified into two categories based on the origin of the gene carrier
ndash Viral gene delivery systems use recombinant viruses as carriersndash Non-viral gene delivery system
bull Physical (carrier-free gene delivery)bull Chemical (synthetic vector-based gene delivery
Each vector has its own advantages and disadvantages
None of these types of vectors has been found to be ideal for both safe and efficient gene transfer and stable and sufficient gene expression
Gene Delivery Slide 20 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Delivery Systems
Viral techniques use various classes of viruses for gene delivery
Viruses introduce their genome into the cells with high efficiency
However there are limitations including a strong immune response triggered by the expression of viral genes oncogenic insertions into the genome and unstable maintenance of viruses in the host cell
Gene therapy vectors are being developed by genetic modification of retroviruses adenoviruses poxviruses parvoviruses (adeno-associated viruses) herpesviruses and others
Gene Delivery Slide 21 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Replication These vectors are engineered by deleting the essential genes
which allow replication assembling or infection
But on the other hand vectors need to be produced in large amounts of virus particles
Specialized cell lines called ldquopackaging cell linesrdquo (PCLs) engineered to replace a function of a deleted viral gene Removed virus genes are inserted into the genome of the packaging cells and can be expressed there
The process by which the function of the deleted viral gene is supplied by a protein encoded in the PCL genome is called ldquocomplementationrdquo
Gene Delivery Slide 22 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vectors
Gene Delivery Slide 23 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Non-viral techniques of gene transfer represent a simple and more
importantly safer alternative to viral vectors
Because of their relatively simple quantitative production and low immunogenicity these vectors are attractive tools in gene therapy
Ongoing studies and the development of new vectors that show transfection efficiency just like that of viral vectors point towards their great potential
The main advantage is a virtually unlimited clone capacity low toxicity and immunogenicity of non-viral vectors and the ability of repeated application
Gene Delivery Slide 24 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Non-viral Gene Delivery
Viruses are naturally occurring being which are specialized for transfection
So they inherently can pass the barriers to gene delivery and transfer their genetic material into host
For non-viral delivery systems these abilities should be designed in the vector
Gene Delivery Slide 25 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-viral Gene Delivery Systems Non-viral gene delivery system can be categorized to
ndash Physical (carrier-free gene delivery)bull Naked DNAbull Direct Injectionbull Electroporationbull Gene-Gun
ndash Chemical (synthetic vector-based gene delivery)bull Lipoplex Vectorsbull Polyplexesbull Dendrimeric Vectorsbull Polypeptide Vectorsbull Inorganic Nanoparticles
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 2 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Definitions
Gene therapy refers to the transmission of nucleic acid (DNA and RNA) encoding a therapeutic gene of interest into the targeted cells or organs with consequent expression of the transgene
Gene Delivery is the process of introducing foreign genetic material into host cellsIn other words Gene Delivery is a key step to gene therapy
A Gene Delivery System (GDS) is a special purpose conjugate that consists of carry-over material and nucleic acids (payload)
Gene Delivery Slide 3 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Therapy ApproachesSeveral Approaches may be used for correcting faulty
genesndash A normal gene may be inserted into the genome to compensate
for nonfunctional gene (the most common approach)ndash An abnormal gene is replaced for a normal genendash The abnormal gene could be repaired through selective reverse
mutationndash The regulation of a gene expression could be altered
Gene Delivery Slide 4 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Barriers to Gene Delivery In order to deliver genes into cell nucleus several barriers need to
be overcome
Extracellular barriersndash Nucleasesndash Plasma Proteins (aggregation)ndash Immune systemndash Glomerular filtration
Cellular barriersndash Cell Membranendash Endolysosomal entrapmentndash Cytosolic Sequestrationndash Nuclear Exclusion
Gene Delivery Slide 5 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene Delivery Off-target Effect
siRNAs are capable of reducing expression of nontarget genes due to interaction of the siRNA guide strand with a partially complementary site on an ldquooff-targetrdquo mRNA
Careful selection of siRNA sequences to avoid off-target effects is an important issue
Gene Delivery Slide 6 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene Delivery Immune stimulation
Innate immune activation is a significant undesirable side effect due to the toxicities associated with excessive cytokine release
The inflammatory response is mediated by toll-like receptors (TLRs) which are located in endosome compartments and recognize unmethylated CpG DNA as well as various moieties in double-stranded RNA or their degraded products
TLR-mediated recognition and concomitant immune stimulation can be inhibited by chemical modifications such as introduction of 2prime-O-methyl (2primeOMe)-modified nucleotides
Gene Delivery Slide 7 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliverySerum inactivation and enzyme degradation
Naked genetic material are rapidly degraded by nuclease in the serum
2prime-hydroxyl group of the ribose ring is not necessary for gene silencing by siRNAs common modifications are 2prime-fluoro 2prime-O-methyl and 2prime-amine conjugations
Naked genetic material lack specific tumor targeting and would be quickly excreted by the kidney upon systemic administration
Gene Delivery Slide 8 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryRES Recognition
In order to condense negatively charged nucleic acids into delivery vehicles most vehicles are cationic
The positive charge aids cellular uptake but also promotes nonspecific interactions with non target cells and extracellular components such as serum proteins and extracellular matrix
Binding of proteins is the primary mechanism for RES recognition
The most common way to decrease nonspecific interactions is to shield the nanoparticle surface with hydrophilic uncharged polymers such as polyethylene glycol (PEG)
Gene Delivery Slide 9 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEntrance Into Cells
Delivery systems that are not degraded phagocytosed or cleared by the kidney must leave the bloodstream by traversing the endothelium to reach other tissues This occurs most readily in tissues whose endothelia are discontinuous (fenestrated) such as the liver and many solid tumours
Most siRNA delivery systems undergo cellular internalization through endocytosis
Various delivery systems aim to improve the rate of cellular uptake by incorporating targeting ligands that bind specifically to receptors on target cells to induce receptor-mediated endocytosis
Other systems use cell-penetrating peptides that can induce cell uptake through endocytosis or non-endocytic mechanisms
Gene Delivery Slide 10 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEntrance Into Cells
Commonly used targeting ligands include ndash Aptamersndash Cell penetrating peptidesndash Antibodiesndash Peptides or proteinsndash Small molecule ligands
Gene Delivery Slide 11 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEndosome Escape
The delivery of nonviral gene vehicles almost invariably involves endocytosis and escaping from endosomes before they traffic into lysosomes is an essential step to avoid enzymatic degradation
Cationic lipid complexes can bind to anionic lipids on the endosome membrane and form neutral ion pairs These ion-pairs destabilize the endosome membrane and promote de-assembly of the lipoplex
Polymers and peptides with high buffer capacity between pH 72 and 50 such as PEI or peptides containing the cationic amino group lysine arginine and histidine could buffer the endosome This would cause more protons to enter into the endosomes followed by chloride ions leading to increased osmotic pressure and endosome rupture (ldquoproton sponge effectrdquo)
Stimuli other than pH have been used to destabilize endosome membranes Lipid or polymer derivatives which are sensitive to sulfhydryl reduction and enzymatic cleavage have been used to construct nonviral gene vectors
Gene Delivery Slide 12 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEndosome Escape
Gene Delivery Slide 13 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
The final target destination of antisense oligonucleotides siRNAmiRNA and mRNA is the cytoplasm whereas pDNA must be transported into the nucleus for gene expression
Nuclear transport generally occurs through nuclear pore complexes(NPCs) however nucleic acid condensates are impermeable through nuclear pore complexes due to their large size
In dividing cells the nuclear envelope disassembles during mitosis pDNA transfection can only occur at this stage
For nondividing cells the mechanisms of DNA nuclear transport are of critical importance
Gene Delivery Slide 14 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nuclear Pore Complex
Gene Delivery Slide 15 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
The NPC is freely permeable to small molecules metabolites and ions but acts as a highly efficient molecular sieve for macromolecules
Transport of almost all macromolecules into and out of the nucleus is achieved requires the assistance of soluble nuclear transport factors (NTFs) and transport signals
The NTFs specifically bind transport signals found on their cognate substrates and translocate them through the NPC channel
The best-studied transport signals are found on nuclear protein cargoes Such signals consist of short amino acid sequences called nuclear localization sequences (NlSs for import) or nuclear export sequences (NESs for export)
Nuclear Pore Complex
Gene Delivery Slide 16 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
To facilitate nuclear targeting many nuclear localization signal (NLS) peptides have been studied to allow DNA nuclear entry through nuclear pore complexes by active transport
NLSs are short clusters of amino acids that can bind to cytoplasmic receptors known as importins NLS peptides can bind to DNA either through noncovalent electrostatic interaction or by covalent attachment
The most well-known and popularly used NLS is from the large tumor antigen of simian virus 40 (SV40)
Some DNA sequences themselves have nuclear import activity based on their ability to bind to cell-specific transcription factors
Gene Delivery Slide 17 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Systems The most important and most difficult challenge in gene therapy is
the issue of delivery
Not only must the therapy evade the RES as it circulates after systemic administration but it must also cross several barriers before it arrives in the cytoplasm or nucleus of its target cells
So there is a need to develop a safe and efficient gene transfection therapy system
Carry-over material of a GDS can pass through the cell membrane and in some instances enter the nucleus
Carry-over material are called vectors
Gene Delivery Slide 18 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Vectors
A vector can be described as a system fulfilling several functions including
ndash Enabling delivery of genes into the target cells and their nucleus ndash Providing protection from gene degradationndash Ensuring gene transcription in the cell
Gene therapy vectors should not only be targeted and safe but also protected from degradation sequestration or immune attack
However it has to be inexpensive and easy to produce and purify in large amounts and at high concentrations
Gene Delivery Slide 19 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Categorization
Gene delivery systems can be classified into two categories based on the origin of the gene carrier
ndash Viral gene delivery systems use recombinant viruses as carriersndash Non-viral gene delivery system
bull Physical (carrier-free gene delivery)bull Chemical (synthetic vector-based gene delivery
Each vector has its own advantages and disadvantages
None of these types of vectors has been found to be ideal for both safe and efficient gene transfer and stable and sufficient gene expression
Gene Delivery Slide 20 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Delivery Systems
Viral techniques use various classes of viruses for gene delivery
Viruses introduce their genome into the cells with high efficiency
However there are limitations including a strong immune response triggered by the expression of viral genes oncogenic insertions into the genome and unstable maintenance of viruses in the host cell
Gene therapy vectors are being developed by genetic modification of retroviruses adenoviruses poxviruses parvoviruses (adeno-associated viruses) herpesviruses and others
Gene Delivery Slide 21 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Replication These vectors are engineered by deleting the essential genes
which allow replication assembling or infection
But on the other hand vectors need to be produced in large amounts of virus particles
Specialized cell lines called ldquopackaging cell linesrdquo (PCLs) engineered to replace a function of a deleted viral gene Removed virus genes are inserted into the genome of the packaging cells and can be expressed there
The process by which the function of the deleted viral gene is supplied by a protein encoded in the PCL genome is called ldquocomplementationrdquo
Gene Delivery Slide 22 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vectors
Gene Delivery Slide 23 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Non-viral techniques of gene transfer represent a simple and more
importantly safer alternative to viral vectors
Because of their relatively simple quantitative production and low immunogenicity these vectors are attractive tools in gene therapy
Ongoing studies and the development of new vectors that show transfection efficiency just like that of viral vectors point towards their great potential
The main advantage is a virtually unlimited clone capacity low toxicity and immunogenicity of non-viral vectors and the ability of repeated application
Gene Delivery Slide 24 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Non-viral Gene Delivery
Viruses are naturally occurring being which are specialized for transfection
So they inherently can pass the barriers to gene delivery and transfer their genetic material into host
For non-viral delivery systems these abilities should be designed in the vector
Gene Delivery Slide 25 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-viral Gene Delivery Systems Non-viral gene delivery system can be categorized to
ndash Physical (carrier-free gene delivery)bull Naked DNAbull Direct Injectionbull Electroporationbull Gene-Gun
ndash Chemical (synthetic vector-based gene delivery)bull Lipoplex Vectorsbull Polyplexesbull Dendrimeric Vectorsbull Polypeptide Vectorsbull Inorganic Nanoparticles
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 3 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Therapy ApproachesSeveral Approaches may be used for correcting faulty
genesndash A normal gene may be inserted into the genome to compensate
for nonfunctional gene (the most common approach)ndash An abnormal gene is replaced for a normal genendash The abnormal gene could be repaired through selective reverse
mutationndash The regulation of a gene expression could be altered
Gene Delivery Slide 4 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Barriers to Gene Delivery In order to deliver genes into cell nucleus several barriers need to
be overcome
Extracellular barriersndash Nucleasesndash Plasma Proteins (aggregation)ndash Immune systemndash Glomerular filtration
Cellular barriersndash Cell Membranendash Endolysosomal entrapmentndash Cytosolic Sequestrationndash Nuclear Exclusion
Gene Delivery Slide 5 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene Delivery Off-target Effect
siRNAs are capable of reducing expression of nontarget genes due to interaction of the siRNA guide strand with a partially complementary site on an ldquooff-targetrdquo mRNA
Careful selection of siRNA sequences to avoid off-target effects is an important issue
Gene Delivery Slide 6 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene Delivery Immune stimulation
Innate immune activation is a significant undesirable side effect due to the toxicities associated with excessive cytokine release
The inflammatory response is mediated by toll-like receptors (TLRs) which are located in endosome compartments and recognize unmethylated CpG DNA as well as various moieties in double-stranded RNA or their degraded products
TLR-mediated recognition and concomitant immune stimulation can be inhibited by chemical modifications such as introduction of 2prime-O-methyl (2primeOMe)-modified nucleotides
Gene Delivery Slide 7 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliverySerum inactivation and enzyme degradation
Naked genetic material are rapidly degraded by nuclease in the serum
2prime-hydroxyl group of the ribose ring is not necessary for gene silencing by siRNAs common modifications are 2prime-fluoro 2prime-O-methyl and 2prime-amine conjugations
Naked genetic material lack specific tumor targeting and would be quickly excreted by the kidney upon systemic administration
Gene Delivery Slide 8 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryRES Recognition
In order to condense negatively charged nucleic acids into delivery vehicles most vehicles are cationic
The positive charge aids cellular uptake but also promotes nonspecific interactions with non target cells and extracellular components such as serum proteins and extracellular matrix
Binding of proteins is the primary mechanism for RES recognition
The most common way to decrease nonspecific interactions is to shield the nanoparticle surface with hydrophilic uncharged polymers such as polyethylene glycol (PEG)
Gene Delivery Slide 9 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEntrance Into Cells
Delivery systems that are not degraded phagocytosed or cleared by the kidney must leave the bloodstream by traversing the endothelium to reach other tissues This occurs most readily in tissues whose endothelia are discontinuous (fenestrated) such as the liver and many solid tumours
Most siRNA delivery systems undergo cellular internalization through endocytosis
Various delivery systems aim to improve the rate of cellular uptake by incorporating targeting ligands that bind specifically to receptors on target cells to induce receptor-mediated endocytosis
Other systems use cell-penetrating peptides that can induce cell uptake through endocytosis or non-endocytic mechanisms
Gene Delivery Slide 10 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEntrance Into Cells
Commonly used targeting ligands include ndash Aptamersndash Cell penetrating peptidesndash Antibodiesndash Peptides or proteinsndash Small molecule ligands
Gene Delivery Slide 11 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEndosome Escape
The delivery of nonviral gene vehicles almost invariably involves endocytosis and escaping from endosomes before they traffic into lysosomes is an essential step to avoid enzymatic degradation
Cationic lipid complexes can bind to anionic lipids on the endosome membrane and form neutral ion pairs These ion-pairs destabilize the endosome membrane and promote de-assembly of the lipoplex
Polymers and peptides with high buffer capacity between pH 72 and 50 such as PEI or peptides containing the cationic amino group lysine arginine and histidine could buffer the endosome This would cause more protons to enter into the endosomes followed by chloride ions leading to increased osmotic pressure and endosome rupture (ldquoproton sponge effectrdquo)
Stimuli other than pH have been used to destabilize endosome membranes Lipid or polymer derivatives which are sensitive to sulfhydryl reduction and enzymatic cleavage have been used to construct nonviral gene vectors
Gene Delivery Slide 12 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEndosome Escape
Gene Delivery Slide 13 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
The final target destination of antisense oligonucleotides siRNAmiRNA and mRNA is the cytoplasm whereas pDNA must be transported into the nucleus for gene expression
Nuclear transport generally occurs through nuclear pore complexes(NPCs) however nucleic acid condensates are impermeable through nuclear pore complexes due to their large size
In dividing cells the nuclear envelope disassembles during mitosis pDNA transfection can only occur at this stage
For nondividing cells the mechanisms of DNA nuclear transport are of critical importance
Gene Delivery Slide 14 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nuclear Pore Complex
Gene Delivery Slide 15 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
The NPC is freely permeable to small molecules metabolites and ions but acts as a highly efficient molecular sieve for macromolecules
Transport of almost all macromolecules into and out of the nucleus is achieved requires the assistance of soluble nuclear transport factors (NTFs) and transport signals
The NTFs specifically bind transport signals found on their cognate substrates and translocate them through the NPC channel
The best-studied transport signals are found on nuclear protein cargoes Such signals consist of short amino acid sequences called nuclear localization sequences (NlSs for import) or nuclear export sequences (NESs for export)
Nuclear Pore Complex
Gene Delivery Slide 16 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
To facilitate nuclear targeting many nuclear localization signal (NLS) peptides have been studied to allow DNA nuclear entry through nuclear pore complexes by active transport
NLSs are short clusters of amino acids that can bind to cytoplasmic receptors known as importins NLS peptides can bind to DNA either through noncovalent electrostatic interaction or by covalent attachment
The most well-known and popularly used NLS is from the large tumor antigen of simian virus 40 (SV40)
Some DNA sequences themselves have nuclear import activity based on their ability to bind to cell-specific transcription factors
Gene Delivery Slide 17 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Systems The most important and most difficult challenge in gene therapy is
the issue of delivery
Not only must the therapy evade the RES as it circulates after systemic administration but it must also cross several barriers before it arrives in the cytoplasm or nucleus of its target cells
So there is a need to develop a safe and efficient gene transfection therapy system
Carry-over material of a GDS can pass through the cell membrane and in some instances enter the nucleus
Carry-over material are called vectors
Gene Delivery Slide 18 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Vectors
A vector can be described as a system fulfilling several functions including
ndash Enabling delivery of genes into the target cells and their nucleus ndash Providing protection from gene degradationndash Ensuring gene transcription in the cell
Gene therapy vectors should not only be targeted and safe but also protected from degradation sequestration or immune attack
However it has to be inexpensive and easy to produce and purify in large amounts and at high concentrations
Gene Delivery Slide 19 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Categorization
Gene delivery systems can be classified into two categories based on the origin of the gene carrier
ndash Viral gene delivery systems use recombinant viruses as carriersndash Non-viral gene delivery system
bull Physical (carrier-free gene delivery)bull Chemical (synthetic vector-based gene delivery
Each vector has its own advantages and disadvantages
None of these types of vectors has been found to be ideal for both safe and efficient gene transfer and stable and sufficient gene expression
Gene Delivery Slide 20 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Delivery Systems
Viral techniques use various classes of viruses for gene delivery
Viruses introduce their genome into the cells with high efficiency
However there are limitations including a strong immune response triggered by the expression of viral genes oncogenic insertions into the genome and unstable maintenance of viruses in the host cell
Gene therapy vectors are being developed by genetic modification of retroviruses adenoviruses poxviruses parvoviruses (adeno-associated viruses) herpesviruses and others
Gene Delivery Slide 21 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Replication These vectors are engineered by deleting the essential genes
which allow replication assembling or infection
But on the other hand vectors need to be produced in large amounts of virus particles
Specialized cell lines called ldquopackaging cell linesrdquo (PCLs) engineered to replace a function of a deleted viral gene Removed virus genes are inserted into the genome of the packaging cells and can be expressed there
The process by which the function of the deleted viral gene is supplied by a protein encoded in the PCL genome is called ldquocomplementationrdquo
Gene Delivery Slide 22 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vectors
Gene Delivery Slide 23 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Non-viral techniques of gene transfer represent a simple and more
importantly safer alternative to viral vectors
Because of their relatively simple quantitative production and low immunogenicity these vectors are attractive tools in gene therapy
Ongoing studies and the development of new vectors that show transfection efficiency just like that of viral vectors point towards their great potential
The main advantage is a virtually unlimited clone capacity low toxicity and immunogenicity of non-viral vectors and the ability of repeated application
Gene Delivery Slide 24 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Non-viral Gene Delivery
Viruses are naturally occurring being which are specialized for transfection
So they inherently can pass the barriers to gene delivery and transfer their genetic material into host
For non-viral delivery systems these abilities should be designed in the vector
Gene Delivery Slide 25 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-viral Gene Delivery Systems Non-viral gene delivery system can be categorized to
ndash Physical (carrier-free gene delivery)bull Naked DNAbull Direct Injectionbull Electroporationbull Gene-Gun
ndash Chemical (synthetic vector-based gene delivery)bull Lipoplex Vectorsbull Polyplexesbull Dendrimeric Vectorsbull Polypeptide Vectorsbull Inorganic Nanoparticles
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 4 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Barriers to Gene Delivery In order to deliver genes into cell nucleus several barriers need to
be overcome
Extracellular barriersndash Nucleasesndash Plasma Proteins (aggregation)ndash Immune systemndash Glomerular filtration
Cellular barriersndash Cell Membranendash Endolysosomal entrapmentndash Cytosolic Sequestrationndash Nuclear Exclusion
Gene Delivery Slide 5 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene Delivery Off-target Effect
siRNAs are capable of reducing expression of nontarget genes due to interaction of the siRNA guide strand with a partially complementary site on an ldquooff-targetrdquo mRNA
Careful selection of siRNA sequences to avoid off-target effects is an important issue
Gene Delivery Slide 6 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene Delivery Immune stimulation
Innate immune activation is a significant undesirable side effect due to the toxicities associated with excessive cytokine release
The inflammatory response is mediated by toll-like receptors (TLRs) which are located in endosome compartments and recognize unmethylated CpG DNA as well as various moieties in double-stranded RNA or their degraded products
TLR-mediated recognition and concomitant immune stimulation can be inhibited by chemical modifications such as introduction of 2prime-O-methyl (2primeOMe)-modified nucleotides
Gene Delivery Slide 7 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliverySerum inactivation and enzyme degradation
Naked genetic material are rapidly degraded by nuclease in the serum
2prime-hydroxyl group of the ribose ring is not necessary for gene silencing by siRNAs common modifications are 2prime-fluoro 2prime-O-methyl and 2prime-amine conjugations
Naked genetic material lack specific tumor targeting and would be quickly excreted by the kidney upon systemic administration
Gene Delivery Slide 8 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryRES Recognition
In order to condense negatively charged nucleic acids into delivery vehicles most vehicles are cationic
The positive charge aids cellular uptake but also promotes nonspecific interactions with non target cells and extracellular components such as serum proteins and extracellular matrix
Binding of proteins is the primary mechanism for RES recognition
The most common way to decrease nonspecific interactions is to shield the nanoparticle surface with hydrophilic uncharged polymers such as polyethylene glycol (PEG)
Gene Delivery Slide 9 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEntrance Into Cells
Delivery systems that are not degraded phagocytosed or cleared by the kidney must leave the bloodstream by traversing the endothelium to reach other tissues This occurs most readily in tissues whose endothelia are discontinuous (fenestrated) such as the liver and many solid tumours
Most siRNA delivery systems undergo cellular internalization through endocytosis
Various delivery systems aim to improve the rate of cellular uptake by incorporating targeting ligands that bind specifically to receptors on target cells to induce receptor-mediated endocytosis
Other systems use cell-penetrating peptides that can induce cell uptake through endocytosis or non-endocytic mechanisms
Gene Delivery Slide 10 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEntrance Into Cells
Commonly used targeting ligands include ndash Aptamersndash Cell penetrating peptidesndash Antibodiesndash Peptides or proteinsndash Small molecule ligands
Gene Delivery Slide 11 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEndosome Escape
The delivery of nonviral gene vehicles almost invariably involves endocytosis and escaping from endosomes before they traffic into lysosomes is an essential step to avoid enzymatic degradation
Cationic lipid complexes can bind to anionic lipids on the endosome membrane and form neutral ion pairs These ion-pairs destabilize the endosome membrane and promote de-assembly of the lipoplex
Polymers and peptides with high buffer capacity between pH 72 and 50 such as PEI or peptides containing the cationic amino group lysine arginine and histidine could buffer the endosome This would cause more protons to enter into the endosomes followed by chloride ions leading to increased osmotic pressure and endosome rupture (ldquoproton sponge effectrdquo)
Stimuli other than pH have been used to destabilize endosome membranes Lipid or polymer derivatives which are sensitive to sulfhydryl reduction and enzymatic cleavage have been used to construct nonviral gene vectors
Gene Delivery Slide 12 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEndosome Escape
Gene Delivery Slide 13 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
The final target destination of antisense oligonucleotides siRNAmiRNA and mRNA is the cytoplasm whereas pDNA must be transported into the nucleus for gene expression
Nuclear transport generally occurs through nuclear pore complexes(NPCs) however nucleic acid condensates are impermeable through nuclear pore complexes due to their large size
In dividing cells the nuclear envelope disassembles during mitosis pDNA transfection can only occur at this stage
For nondividing cells the mechanisms of DNA nuclear transport are of critical importance
Gene Delivery Slide 14 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nuclear Pore Complex
Gene Delivery Slide 15 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
The NPC is freely permeable to small molecules metabolites and ions but acts as a highly efficient molecular sieve for macromolecules
Transport of almost all macromolecules into and out of the nucleus is achieved requires the assistance of soluble nuclear transport factors (NTFs) and transport signals
The NTFs specifically bind transport signals found on their cognate substrates and translocate them through the NPC channel
The best-studied transport signals are found on nuclear protein cargoes Such signals consist of short amino acid sequences called nuclear localization sequences (NlSs for import) or nuclear export sequences (NESs for export)
Nuclear Pore Complex
Gene Delivery Slide 16 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
To facilitate nuclear targeting many nuclear localization signal (NLS) peptides have been studied to allow DNA nuclear entry through nuclear pore complexes by active transport
NLSs are short clusters of amino acids that can bind to cytoplasmic receptors known as importins NLS peptides can bind to DNA either through noncovalent electrostatic interaction or by covalent attachment
The most well-known and popularly used NLS is from the large tumor antigen of simian virus 40 (SV40)
Some DNA sequences themselves have nuclear import activity based on their ability to bind to cell-specific transcription factors
Gene Delivery Slide 17 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Systems The most important and most difficult challenge in gene therapy is
the issue of delivery
Not only must the therapy evade the RES as it circulates after systemic administration but it must also cross several barriers before it arrives in the cytoplasm or nucleus of its target cells
So there is a need to develop a safe and efficient gene transfection therapy system
Carry-over material of a GDS can pass through the cell membrane and in some instances enter the nucleus
Carry-over material are called vectors
Gene Delivery Slide 18 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Vectors
A vector can be described as a system fulfilling several functions including
ndash Enabling delivery of genes into the target cells and their nucleus ndash Providing protection from gene degradationndash Ensuring gene transcription in the cell
Gene therapy vectors should not only be targeted and safe but also protected from degradation sequestration or immune attack
However it has to be inexpensive and easy to produce and purify in large amounts and at high concentrations
Gene Delivery Slide 19 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Categorization
Gene delivery systems can be classified into two categories based on the origin of the gene carrier
ndash Viral gene delivery systems use recombinant viruses as carriersndash Non-viral gene delivery system
bull Physical (carrier-free gene delivery)bull Chemical (synthetic vector-based gene delivery
Each vector has its own advantages and disadvantages
None of these types of vectors has been found to be ideal for both safe and efficient gene transfer and stable and sufficient gene expression
Gene Delivery Slide 20 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Delivery Systems
Viral techniques use various classes of viruses for gene delivery
Viruses introduce their genome into the cells with high efficiency
However there are limitations including a strong immune response triggered by the expression of viral genes oncogenic insertions into the genome and unstable maintenance of viruses in the host cell
Gene therapy vectors are being developed by genetic modification of retroviruses adenoviruses poxviruses parvoviruses (adeno-associated viruses) herpesviruses and others
Gene Delivery Slide 21 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Replication These vectors are engineered by deleting the essential genes
which allow replication assembling or infection
But on the other hand vectors need to be produced in large amounts of virus particles
Specialized cell lines called ldquopackaging cell linesrdquo (PCLs) engineered to replace a function of a deleted viral gene Removed virus genes are inserted into the genome of the packaging cells and can be expressed there
The process by which the function of the deleted viral gene is supplied by a protein encoded in the PCL genome is called ldquocomplementationrdquo
Gene Delivery Slide 22 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vectors
Gene Delivery Slide 23 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Non-viral techniques of gene transfer represent a simple and more
importantly safer alternative to viral vectors
Because of their relatively simple quantitative production and low immunogenicity these vectors are attractive tools in gene therapy
Ongoing studies and the development of new vectors that show transfection efficiency just like that of viral vectors point towards their great potential
The main advantage is a virtually unlimited clone capacity low toxicity and immunogenicity of non-viral vectors and the ability of repeated application
Gene Delivery Slide 24 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Non-viral Gene Delivery
Viruses are naturally occurring being which are specialized for transfection
So they inherently can pass the barriers to gene delivery and transfer their genetic material into host
For non-viral delivery systems these abilities should be designed in the vector
Gene Delivery Slide 25 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-viral Gene Delivery Systems Non-viral gene delivery system can be categorized to
ndash Physical (carrier-free gene delivery)bull Naked DNAbull Direct Injectionbull Electroporationbull Gene-Gun
ndash Chemical (synthetic vector-based gene delivery)bull Lipoplex Vectorsbull Polyplexesbull Dendrimeric Vectorsbull Polypeptide Vectorsbull Inorganic Nanoparticles
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 5 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene Delivery Off-target Effect
siRNAs are capable of reducing expression of nontarget genes due to interaction of the siRNA guide strand with a partially complementary site on an ldquooff-targetrdquo mRNA
Careful selection of siRNA sequences to avoid off-target effects is an important issue
Gene Delivery Slide 6 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene Delivery Immune stimulation
Innate immune activation is a significant undesirable side effect due to the toxicities associated with excessive cytokine release
The inflammatory response is mediated by toll-like receptors (TLRs) which are located in endosome compartments and recognize unmethylated CpG DNA as well as various moieties in double-stranded RNA or their degraded products
TLR-mediated recognition and concomitant immune stimulation can be inhibited by chemical modifications such as introduction of 2prime-O-methyl (2primeOMe)-modified nucleotides
Gene Delivery Slide 7 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliverySerum inactivation and enzyme degradation
Naked genetic material are rapidly degraded by nuclease in the serum
2prime-hydroxyl group of the ribose ring is not necessary for gene silencing by siRNAs common modifications are 2prime-fluoro 2prime-O-methyl and 2prime-amine conjugations
Naked genetic material lack specific tumor targeting and would be quickly excreted by the kidney upon systemic administration
Gene Delivery Slide 8 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryRES Recognition
In order to condense negatively charged nucleic acids into delivery vehicles most vehicles are cationic
The positive charge aids cellular uptake but also promotes nonspecific interactions with non target cells and extracellular components such as serum proteins and extracellular matrix
Binding of proteins is the primary mechanism for RES recognition
The most common way to decrease nonspecific interactions is to shield the nanoparticle surface with hydrophilic uncharged polymers such as polyethylene glycol (PEG)
Gene Delivery Slide 9 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEntrance Into Cells
Delivery systems that are not degraded phagocytosed or cleared by the kidney must leave the bloodstream by traversing the endothelium to reach other tissues This occurs most readily in tissues whose endothelia are discontinuous (fenestrated) such as the liver and many solid tumours
Most siRNA delivery systems undergo cellular internalization through endocytosis
Various delivery systems aim to improve the rate of cellular uptake by incorporating targeting ligands that bind specifically to receptors on target cells to induce receptor-mediated endocytosis
Other systems use cell-penetrating peptides that can induce cell uptake through endocytosis or non-endocytic mechanisms
Gene Delivery Slide 10 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEntrance Into Cells
Commonly used targeting ligands include ndash Aptamersndash Cell penetrating peptidesndash Antibodiesndash Peptides or proteinsndash Small molecule ligands
Gene Delivery Slide 11 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEndosome Escape
The delivery of nonviral gene vehicles almost invariably involves endocytosis and escaping from endosomes before they traffic into lysosomes is an essential step to avoid enzymatic degradation
Cationic lipid complexes can bind to anionic lipids on the endosome membrane and form neutral ion pairs These ion-pairs destabilize the endosome membrane and promote de-assembly of the lipoplex
Polymers and peptides with high buffer capacity between pH 72 and 50 such as PEI or peptides containing the cationic amino group lysine arginine and histidine could buffer the endosome This would cause more protons to enter into the endosomes followed by chloride ions leading to increased osmotic pressure and endosome rupture (ldquoproton sponge effectrdquo)
Stimuli other than pH have been used to destabilize endosome membranes Lipid or polymer derivatives which are sensitive to sulfhydryl reduction and enzymatic cleavage have been used to construct nonviral gene vectors
Gene Delivery Slide 12 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEndosome Escape
Gene Delivery Slide 13 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
The final target destination of antisense oligonucleotides siRNAmiRNA and mRNA is the cytoplasm whereas pDNA must be transported into the nucleus for gene expression
Nuclear transport generally occurs through nuclear pore complexes(NPCs) however nucleic acid condensates are impermeable through nuclear pore complexes due to their large size
In dividing cells the nuclear envelope disassembles during mitosis pDNA transfection can only occur at this stage
For nondividing cells the mechanisms of DNA nuclear transport are of critical importance
Gene Delivery Slide 14 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nuclear Pore Complex
Gene Delivery Slide 15 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
The NPC is freely permeable to small molecules metabolites and ions but acts as a highly efficient molecular sieve for macromolecules
Transport of almost all macromolecules into and out of the nucleus is achieved requires the assistance of soluble nuclear transport factors (NTFs) and transport signals
The NTFs specifically bind transport signals found on their cognate substrates and translocate them through the NPC channel
The best-studied transport signals are found on nuclear protein cargoes Such signals consist of short amino acid sequences called nuclear localization sequences (NlSs for import) or nuclear export sequences (NESs for export)
Nuclear Pore Complex
Gene Delivery Slide 16 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
To facilitate nuclear targeting many nuclear localization signal (NLS) peptides have been studied to allow DNA nuclear entry through nuclear pore complexes by active transport
NLSs are short clusters of amino acids that can bind to cytoplasmic receptors known as importins NLS peptides can bind to DNA either through noncovalent electrostatic interaction or by covalent attachment
The most well-known and popularly used NLS is from the large tumor antigen of simian virus 40 (SV40)
Some DNA sequences themselves have nuclear import activity based on their ability to bind to cell-specific transcription factors
Gene Delivery Slide 17 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Systems The most important and most difficult challenge in gene therapy is
the issue of delivery
Not only must the therapy evade the RES as it circulates after systemic administration but it must also cross several barriers before it arrives in the cytoplasm or nucleus of its target cells
So there is a need to develop a safe and efficient gene transfection therapy system
Carry-over material of a GDS can pass through the cell membrane and in some instances enter the nucleus
Carry-over material are called vectors
Gene Delivery Slide 18 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Vectors
A vector can be described as a system fulfilling several functions including
ndash Enabling delivery of genes into the target cells and their nucleus ndash Providing protection from gene degradationndash Ensuring gene transcription in the cell
Gene therapy vectors should not only be targeted and safe but also protected from degradation sequestration or immune attack
However it has to be inexpensive and easy to produce and purify in large amounts and at high concentrations
Gene Delivery Slide 19 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Categorization
Gene delivery systems can be classified into two categories based on the origin of the gene carrier
ndash Viral gene delivery systems use recombinant viruses as carriersndash Non-viral gene delivery system
bull Physical (carrier-free gene delivery)bull Chemical (synthetic vector-based gene delivery
Each vector has its own advantages and disadvantages
None of these types of vectors has been found to be ideal for both safe and efficient gene transfer and stable and sufficient gene expression
Gene Delivery Slide 20 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Delivery Systems
Viral techniques use various classes of viruses for gene delivery
Viruses introduce their genome into the cells with high efficiency
However there are limitations including a strong immune response triggered by the expression of viral genes oncogenic insertions into the genome and unstable maintenance of viruses in the host cell
Gene therapy vectors are being developed by genetic modification of retroviruses adenoviruses poxviruses parvoviruses (adeno-associated viruses) herpesviruses and others
Gene Delivery Slide 21 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Replication These vectors are engineered by deleting the essential genes
which allow replication assembling or infection
But on the other hand vectors need to be produced in large amounts of virus particles
Specialized cell lines called ldquopackaging cell linesrdquo (PCLs) engineered to replace a function of a deleted viral gene Removed virus genes are inserted into the genome of the packaging cells and can be expressed there
The process by which the function of the deleted viral gene is supplied by a protein encoded in the PCL genome is called ldquocomplementationrdquo
Gene Delivery Slide 22 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vectors
Gene Delivery Slide 23 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Non-viral techniques of gene transfer represent a simple and more
importantly safer alternative to viral vectors
Because of their relatively simple quantitative production and low immunogenicity these vectors are attractive tools in gene therapy
Ongoing studies and the development of new vectors that show transfection efficiency just like that of viral vectors point towards their great potential
The main advantage is a virtually unlimited clone capacity low toxicity and immunogenicity of non-viral vectors and the ability of repeated application
Gene Delivery Slide 24 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Non-viral Gene Delivery
Viruses are naturally occurring being which are specialized for transfection
So they inherently can pass the barriers to gene delivery and transfer their genetic material into host
For non-viral delivery systems these abilities should be designed in the vector
Gene Delivery Slide 25 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-viral Gene Delivery Systems Non-viral gene delivery system can be categorized to
ndash Physical (carrier-free gene delivery)bull Naked DNAbull Direct Injectionbull Electroporationbull Gene-Gun
ndash Chemical (synthetic vector-based gene delivery)bull Lipoplex Vectorsbull Polyplexesbull Dendrimeric Vectorsbull Polypeptide Vectorsbull Inorganic Nanoparticles
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 6 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene Delivery Immune stimulation
Innate immune activation is a significant undesirable side effect due to the toxicities associated with excessive cytokine release
The inflammatory response is mediated by toll-like receptors (TLRs) which are located in endosome compartments and recognize unmethylated CpG DNA as well as various moieties in double-stranded RNA or their degraded products
TLR-mediated recognition and concomitant immune stimulation can be inhibited by chemical modifications such as introduction of 2prime-O-methyl (2primeOMe)-modified nucleotides
Gene Delivery Slide 7 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliverySerum inactivation and enzyme degradation
Naked genetic material are rapidly degraded by nuclease in the serum
2prime-hydroxyl group of the ribose ring is not necessary for gene silencing by siRNAs common modifications are 2prime-fluoro 2prime-O-methyl and 2prime-amine conjugations
Naked genetic material lack specific tumor targeting and would be quickly excreted by the kidney upon systemic administration
Gene Delivery Slide 8 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryRES Recognition
In order to condense negatively charged nucleic acids into delivery vehicles most vehicles are cationic
The positive charge aids cellular uptake but also promotes nonspecific interactions with non target cells and extracellular components such as serum proteins and extracellular matrix
Binding of proteins is the primary mechanism for RES recognition
The most common way to decrease nonspecific interactions is to shield the nanoparticle surface with hydrophilic uncharged polymers such as polyethylene glycol (PEG)
Gene Delivery Slide 9 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEntrance Into Cells
Delivery systems that are not degraded phagocytosed or cleared by the kidney must leave the bloodstream by traversing the endothelium to reach other tissues This occurs most readily in tissues whose endothelia are discontinuous (fenestrated) such as the liver and many solid tumours
Most siRNA delivery systems undergo cellular internalization through endocytosis
Various delivery systems aim to improve the rate of cellular uptake by incorporating targeting ligands that bind specifically to receptors on target cells to induce receptor-mediated endocytosis
Other systems use cell-penetrating peptides that can induce cell uptake through endocytosis or non-endocytic mechanisms
Gene Delivery Slide 10 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEntrance Into Cells
Commonly used targeting ligands include ndash Aptamersndash Cell penetrating peptidesndash Antibodiesndash Peptides or proteinsndash Small molecule ligands
Gene Delivery Slide 11 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEndosome Escape
The delivery of nonviral gene vehicles almost invariably involves endocytosis and escaping from endosomes before they traffic into lysosomes is an essential step to avoid enzymatic degradation
Cationic lipid complexes can bind to anionic lipids on the endosome membrane and form neutral ion pairs These ion-pairs destabilize the endosome membrane and promote de-assembly of the lipoplex
Polymers and peptides with high buffer capacity between pH 72 and 50 such as PEI or peptides containing the cationic amino group lysine arginine and histidine could buffer the endosome This would cause more protons to enter into the endosomes followed by chloride ions leading to increased osmotic pressure and endosome rupture (ldquoproton sponge effectrdquo)
Stimuli other than pH have been used to destabilize endosome membranes Lipid or polymer derivatives which are sensitive to sulfhydryl reduction and enzymatic cleavage have been used to construct nonviral gene vectors
Gene Delivery Slide 12 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEndosome Escape
Gene Delivery Slide 13 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
The final target destination of antisense oligonucleotides siRNAmiRNA and mRNA is the cytoplasm whereas pDNA must be transported into the nucleus for gene expression
Nuclear transport generally occurs through nuclear pore complexes(NPCs) however nucleic acid condensates are impermeable through nuclear pore complexes due to their large size
In dividing cells the nuclear envelope disassembles during mitosis pDNA transfection can only occur at this stage
For nondividing cells the mechanisms of DNA nuclear transport are of critical importance
Gene Delivery Slide 14 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nuclear Pore Complex
Gene Delivery Slide 15 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
The NPC is freely permeable to small molecules metabolites and ions but acts as a highly efficient molecular sieve for macromolecules
Transport of almost all macromolecules into and out of the nucleus is achieved requires the assistance of soluble nuclear transport factors (NTFs) and transport signals
The NTFs specifically bind transport signals found on their cognate substrates and translocate them through the NPC channel
The best-studied transport signals are found on nuclear protein cargoes Such signals consist of short amino acid sequences called nuclear localization sequences (NlSs for import) or nuclear export sequences (NESs for export)
Nuclear Pore Complex
Gene Delivery Slide 16 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
To facilitate nuclear targeting many nuclear localization signal (NLS) peptides have been studied to allow DNA nuclear entry through nuclear pore complexes by active transport
NLSs are short clusters of amino acids that can bind to cytoplasmic receptors known as importins NLS peptides can bind to DNA either through noncovalent electrostatic interaction or by covalent attachment
The most well-known and popularly used NLS is from the large tumor antigen of simian virus 40 (SV40)
Some DNA sequences themselves have nuclear import activity based on their ability to bind to cell-specific transcription factors
Gene Delivery Slide 17 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Systems The most important and most difficult challenge in gene therapy is
the issue of delivery
Not only must the therapy evade the RES as it circulates after systemic administration but it must also cross several barriers before it arrives in the cytoplasm or nucleus of its target cells
So there is a need to develop a safe and efficient gene transfection therapy system
Carry-over material of a GDS can pass through the cell membrane and in some instances enter the nucleus
Carry-over material are called vectors
Gene Delivery Slide 18 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Vectors
A vector can be described as a system fulfilling several functions including
ndash Enabling delivery of genes into the target cells and their nucleus ndash Providing protection from gene degradationndash Ensuring gene transcription in the cell
Gene therapy vectors should not only be targeted and safe but also protected from degradation sequestration or immune attack
However it has to be inexpensive and easy to produce and purify in large amounts and at high concentrations
Gene Delivery Slide 19 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Categorization
Gene delivery systems can be classified into two categories based on the origin of the gene carrier
ndash Viral gene delivery systems use recombinant viruses as carriersndash Non-viral gene delivery system
bull Physical (carrier-free gene delivery)bull Chemical (synthetic vector-based gene delivery
Each vector has its own advantages and disadvantages
None of these types of vectors has been found to be ideal for both safe and efficient gene transfer and stable and sufficient gene expression
Gene Delivery Slide 20 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Delivery Systems
Viral techniques use various classes of viruses for gene delivery
Viruses introduce their genome into the cells with high efficiency
However there are limitations including a strong immune response triggered by the expression of viral genes oncogenic insertions into the genome and unstable maintenance of viruses in the host cell
Gene therapy vectors are being developed by genetic modification of retroviruses adenoviruses poxviruses parvoviruses (adeno-associated viruses) herpesviruses and others
Gene Delivery Slide 21 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Replication These vectors are engineered by deleting the essential genes
which allow replication assembling or infection
But on the other hand vectors need to be produced in large amounts of virus particles
Specialized cell lines called ldquopackaging cell linesrdquo (PCLs) engineered to replace a function of a deleted viral gene Removed virus genes are inserted into the genome of the packaging cells and can be expressed there
The process by which the function of the deleted viral gene is supplied by a protein encoded in the PCL genome is called ldquocomplementationrdquo
Gene Delivery Slide 22 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vectors
Gene Delivery Slide 23 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Non-viral techniques of gene transfer represent a simple and more
importantly safer alternative to viral vectors
Because of their relatively simple quantitative production and low immunogenicity these vectors are attractive tools in gene therapy
Ongoing studies and the development of new vectors that show transfection efficiency just like that of viral vectors point towards their great potential
The main advantage is a virtually unlimited clone capacity low toxicity and immunogenicity of non-viral vectors and the ability of repeated application
Gene Delivery Slide 24 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Non-viral Gene Delivery
Viruses are naturally occurring being which are specialized for transfection
So they inherently can pass the barriers to gene delivery and transfer their genetic material into host
For non-viral delivery systems these abilities should be designed in the vector
Gene Delivery Slide 25 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-viral Gene Delivery Systems Non-viral gene delivery system can be categorized to
ndash Physical (carrier-free gene delivery)bull Naked DNAbull Direct Injectionbull Electroporationbull Gene-Gun
ndash Chemical (synthetic vector-based gene delivery)bull Lipoplex Vectorsbull Polyplexesbull Dendrimeric Vectorsbull Polypeptide Vectorsbull Inorganic Nanoparticles
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 7 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliverySerum inactivation and enzyme degradation
Naked genetic material are rapidly degraded by nuclease in the serum
2prime-hydroxyl group of the ribose ring is not necessary for gene silencing by siRNAs common modifications are 2prime-fluoro 2prime-O-methyl and 2prime-amine conjugations
Naked genetic material lack specific tumor targeting and would be quickly excreted by the kidney upon systemic administration
Gene Delivery Slide 8 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryRES Recognition
In order to condense negatively charged nucleic acids into delivery vehicles most vehicles are cationic
The positive charge aids cellular uptake but also promotes nonspecific interactions with non target cells and extracellular components such as serum proteins and extracellular matrix
Binding of proteins is the primary mechanism for RES recognition
The most common way to decrease nonspecific interactions is to shield the nanoparticle surface with hydrophilic uncharged polymers such as polyethylene glycol (PEG)
Gene Delivery Slide 9 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEntrance Into Cells
Delivery systems that are not degraded phagocytosed or cleared by the kidney must leave the bloodstream by traversing the endothelium to reach other tissues This occurs most readily in tissues whose endothelia are discontinuous (fenestrated) such as the liver and many solid tumours
Most siRNA delivery systems undergo cellular internalization through endocytosis
Various delivery systems aim to improve the rate of cellular uptake by incorporating targeting ligands that bind specifically to receptors on target cells to induce receptor-mediated endocytosis
Other systems use cell-penetrating peptides that can induce cell uptake through endocytosis or non-endocytic mechanisms
Gene Delivery Slide 10 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEntrance Into Cells
Commonly used targeting ligands include ndash Aptamersndash Cell penetrating peptidesndash Antibodiesndash Peptides or proteinsndash Small molecule ligands
Gene Delivery Slide 11 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEndosome Escape
The delivery of nonviral gene vehicles almost invariably involves endocytosis and escaping from endosomes before they traffic into lysosomes is an essential step to avoid enzymatic degradation
Cationic lipid complexes can bind to anionic lipids on the endosome membrane and form neutral ion pairs These ion-pairs destabilize the endosome membrane and promote de-assembly of the lipoplex
Polymers and peptides with high buffer capacity between pH 72 and 50 such as PEI or peptides containing the cationic amino group lysine arginine and histidine could buffer the endosome This would cause more protons to enter into the endosomes followed by chloride ions leading to increased osmotic pressure and endosome rupture (ldquoproton sponge effectrdquo)
Stimuli other than pH have been used to destabilize endosome membranes Lipid or polymer derivatives which are sensitive to sulfhydryl reduction and enzymatic cleavage have been used to construct nonviral gene vectors
Gene Delivery Slide 12 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEndosome Escape
Gene Delivery Slide 13 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
The final target destination of antisense oligonucleotides siRNAmiRNA and mRNA is the cytoplasm whereas pDNA must be transported into the nucleus for gene expression
Nuclear transport generally occurs through nuclear pore complexes(NPCs) however nucleic acid condensates are impermeable through nuclear pore complexes due to their large size
In dividing cells the nuclear envelope disassembles during mitosis pDNA transfection can only occur at this stage
For nondividing cells the mechanisms of DNA nuclear transport are of critical importance
Gene Delivery Slide 14 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nuclear Pore Complex
Gene Delivery Slide 15 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
The NPC is freely permeable to small molecules metabolites and ions but acts as a highly efficient molecular sieve for macromolecules
Transport of almost all macromolecules into and out of the nucleus is achieved requires the assistance of soluble nuclear transport factors (NTFs) and transport signals
The NTFs specifically bind transport signals found on their cognate substrates and translocate them through the NPC channel
The best-studied transport signals are found on nuclear protein cargoes Such signals consist of short amino acid sequences called nuclear localization sequences (NlSs for import) or nuclear export sequences (NESs for export)
Nuclear Pore Complex
Gene Delivery Slide 16 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
To facilitate nuclear targeting many nuclear localization signal (NLS) peptides have been studied to allow DNA nuclear entry through nuclear pore complexes by active transport
NLSs are short clusters of amino acids that can bind to cytoplasmic receptors known as importins NLS peptides can bind to DNA either through noncovalent electrostatic interaction or by covalent attachment
The most well-known and popularly used NLS is from the large tumor antigen of simian virus 40 (SV40)
Some DNA sequences themselves have nuclear import activity based on their ability to bind to cell-specific transcription factors
Gene Delivery Slide 17 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Systems The most important and most difficult challenge in gene therapy is
the issue of delivery
Not only must the therapy evade the RES as it circulates after systemic administration but it must also cross several barriers before it arrives in the cytoplasm or nucleus of its target cells
So there is a need to develop a safe and efficient gene transfection therapy system
Carry-over material of a GDS can pass through the cell membrane and in some instances enter the nucleus
Carry-over material are called vectors
Gene Delivery Slide 18 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Vectors
A vector can be described as a system fulfilling several functions including
ndash Enabling delivery of genes into the target cells and their nucleus ndash Providing protection from gene degradationndash Ensuring gene transcription in the cell
Gene therapy vectors should not only be targeted and safe but also protected from degradation sequestration or immune attack
However it has to be inexpensive and easy to produce and purify in large amounts and at high concentrations
Gene Delivery Slide 19 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Categorization
Gene delivery systems can be classified into two categories based on the origin of the gene carrier
ndash Viral gene delivery systems use recombinant viruses as carriersndash Non-viral gene delivery system
bull Physical (carrier-free gene delivery)bull Chemical (synthetic vector-based gene delivery
Each vector has its own advantages and disadvantages
None of these types of vectors has been found to be ideal for both safe and efficient gene transfer and stable and sufficient gene expression
Gene Delivery Slide 20 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Delivery Systems
Viral techniques use various classes of viruses for gene delivery
Viruses introduce their genome into the cells with high efficiency
However there are limitations including a strong immune response triggered by the expression of viral genes oncogenic insertions into the genome and unstable maintenance of viruses in the host cell
Gene therapy vectors are being developed by genetic modification of retroviruses adenoviruses poxviruses parvoviruses (adeno-associated viruses) herpesviruses and others
Gene Delivery Slide 21 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Replication These vectors are engineered by deleting the essential genes
which allow replication assembling or infection
But on the other hand vectors need to be produced in large amounts of virus particles
Specialized cell lines called ldquopackaging cell linesrdquo (PCLs) engineered to replace a function of a deleted viral gene Removed virus genes are inserted into the genome of the packaging cells and can be expressed there
The process by which the function of the deleted viral gene is supplied by a protein encoded in the PCL genome is called ldquocomplementationrdquo
Gene Delivery Slide 22 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vectors
Gene Delivery Slide 23 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Non-viral techniques of gene transfer represent a simple and more
importantly safer alternative to viral vectors
Because of their relatively simple quantitative production and low immunogenicity these vectors are attractive tools in gene therapy
Ongoing studies and the development of new vectors that show transfection efficiency just like that of viral vectors point towards their great potential
The main advantage is a virtually unlimited clone capacity low toxicity and immunogenicity of non-viral vectors and the ability of repeated application
Gene Delivery Slide 24 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Non-viral Gene Delivery
Viruses are naturally occurring being which are specialized for transfection
So they inherently can pass the barriers to gene delivery and transfer their genetic material into host
For non-viral delivery systems these abilities should be designed in the vector
Gene Delivery Slide 25 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-viral Gene Delivery Systems Non-viral gene delivery system can be categorized to
ndash Physical (carrier-free gene delivery)bull Naked DNAbull Direct Injectionbull Electroporationbull Gene-Gun
ndash Chemical (synthetic vector-based gene delivery)bull Lipoplex Vectorsbull Polyplexesbull Dendrimeric Vectorsbull Polypeptide Vectorsbull Inorganic Nanoparticles
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 8 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryRES Recognition
In order to condense negatively charged nucleic acids into delivery vehicles most vehicles are cationic
The positive charge aids cellular uptake but also promotes nonspecific interactions with non target cells and extracellular components such as serum proteins and extracellular matrix
Binding of proteins is the primary mechanism for RES recognition
The most common way to decrease nonspecific interactions is to shield the nanoparticle surface with hydrophilic uncharged polymers such as polyethylene glycol (PEG)
Gene Delivery Slide 9 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEntrance Into Cells
Delivery systems that are not degraded phagocytosed or cleared by the kidney must leave the bloodstream by traversing the endothelium to reach other tissues This occurs most readily in tissues whose endothelia are discontinuous (fenestrated) such as the liver and many solid tumours
Most siRNA delivery systems undergo cellular internalization through endocytosis
Various delivery systems aim to improve the rate of cellular uptake by incorporating targeting ligands that bind specifically to receptors on target cells to induce receptor-mediated endocytosis
Other systems use cell-penetrating peptides that can induce cell uptake through endocytosis or non-endocytic mechanisms
Gene Delivery Slide 10 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEntrance Into Cells
Commonly used targeting ligands include ndash Aptamersndash Cell penetrating peptidesndash Antibodiesndash Peptides or proteinsndash Small molecule ligands
Gene Delivery Slide 11 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEndosome Escape
The delivery of nonviral gene vehicles almost invariably involves endocytosis and escaping from endosomes before they traffic into lysosomes is an essential step to avoid enzymatic degradation
Cationic lipid complexes can bind to anionic lipids on the endosome membrane and form neutral ion pairs These ion-pairs destabilize the endosome membrane and promote de-assembly of the lipoplex
Polymers and peptides with high buffer capacity between pH 72 and 50 such as PEI or peptides containing the cationic amino group lysine arginine and histidine could buffer the endosome This would cause more protons to enter into the endosomes followed by chloride ions leading to increased osmotic pressure and endosome rupture (ldquoproton sponge effectrdquo)
Stimuli other than pH have been used to destabilize endosome membranes Lipid or polymer derivatives which are sensitive to sulfhydryl reduction and enzymatic cleavage have been used to construct nonviral gene vectors
Gene Delivery Slide 12 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEndosome Escape
Gene Delivery Slide 13 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
The final target destination of antisense oligonucleotides siRNAmiRNA and mRNA is the cytoplasm whereas pDNA must be transported into the nucleus for gene expression
Nuclear transport generally occurs through nuclear pore complexes(NPCs) however nucleic acid condensates are impermeable through nuclear pore complexes due to their large size
In dividing cells the nuclear envelope disassembles during mitosis pDNA transfection can only occur at this stage
For nondividing cells the mechanisms of DNA nuclear transport are of critical importance
Gene Delivery Slide 14 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nuclear Pore Complex
Gene Delivery Slide 15 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
The NPC is freely permeable to small molecules metabolites and ions but acts as a highly efficient molecular sieve for macromolecules
Transport of almost all macromolecules into and out of the nucleus is achieved requires the assistance of soluble nuclear transport factors (NTFs) and transport signals
The NTFs specifically bind transport signals found on their cognate substrates and translocate them through the NPC channel
The best-studied transport signals are found on nuclear protein cargoes Such signals consist of short amino acid sequences called nuclear localization sequences (NlSs for import) or nuclear export sequences (NESs for export)
Nuclear Pore Complex
Gene Delivery Slide 16 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
To facilitate nuclear targeting many nuclear localization signal (NLS) peptides have been studied to allow DNA nuclear entry through nuclear pore complexes by active transport
NLSs are short clusters of amino acids that can bind to cytoplasmic receptors known as importins NLS peptides can bind to DNA either through noncovalent electrostatic interaction or by covalent attachment
The most well-known and popularly used NLS is from the large tumor antigen of simian virus 40 (SV40)
Some DNA sequences themselves have nuclear import activity based on their ability to bind to cell-specific transcription factors
Gene Delivery Slide 17 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Systems The most important and most difficult challenge in gene therapy is
the issue of delivery
Not only must the therapy evade the RES as it circulates after systemic administration but it must also cross several barriers before it arrives in the cytoplasm or nucleus of its target cells
So there is a need to develop a safe and efficient gene transfection therapy system
Carry-over material of a GDS can pass through the cell membrane and in some instances enter the nucleus
Carry-over material are called vectors
Gene Delivery Slide 18 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Vectors
A vector can be described as a system fulfilling several functions including
ndash Enabling delivery of genes into the target cells and their nucleus ndash Providing protection from gene degradationndash Ensuring gene transcription in the cell
Gene therapy vectors should not only be targeted and safe but also protected from degradation sequestration or immune attack
However it has to be inexpensive and easy to produce and purify in large amounts and at high concentrations
Gene Delivery Slide 19 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Categorization
Gene delivery systems can be classified into two categories based on the origin of the gene carrier
ndash Viral gene delivery systems use recombinant viruses as carriersndash Non-viral gene delivery system
bull Physical (carrier-free gene delivery)bull Chemical (synthetic vector-based gene delivery
Each vector has its own advantages and disadvantages
None of these types of vectors has been found to be ideal for both safe and efficient gene transfer and stable and sufficient gene expression
Gene Delivery Slide 20 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Delivery Systems
Viral techniques use various classes of viruses for gene delivery
Viruses introduce their genome into the cells with high efficiency
However there are limitations including a strong immune response triggered by the expression of viral genes oncogenic insertions into the genome and unstable maintenance of viruses in the host cell
Gene therapy vectors are being developed by genetic modification of retroviruses adenoviruses poxviruses parvoviruses (adeno-associated viruses) herpesviruses and others
Gene Delivery Slide 21 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Replication These vectors are engineered by deleting the essential genes
which allow replication assembling or infection
But on the other hand vectors need to be produced in large amounts of virus particles
Specialized cell lines called ldquopackaging cell linesrdquo (PCLs) engineered to replace a function of a deleted viral gene Removed virus genes are inserted into the genome of the packaging cells and can be expressed there
The process by which the function of the deleted viral gene is supplied by a protein encoded in the PCL genome is called ldquocomplementationrdquo
Gene Delivery Slide 22 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vectors
Gene Delivery Slide 23 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Non-viral techniques of gene transfer represent a simple and more
importantly safer alternative to viral vectors
Because of their relatively simple quantitative production and low immunogenicity these vectors are attractive tools in gene therapy
Ongoing studies and the development of new vectors that show transfection efficiency just like that of viral vectors point towards their great potential
The main advantage is a virtually unlimited clone capacity low toxicity and immunogenicity of non-viral vectors and the ability of repeated application
Gene Delivery Slide 24 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Non-viral Gene Delivery
Viruses are naturally occurring being which are specialized for transfection
So they inherently can pass the barriers to gene delivery and transfer their genetic material into host
For non-viral delivery systems these abilities should be designed in the vector
Gene Delivery Slide 25 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-viral Gene Delivery Systems Non-viral gene delivery system can be categorized to
ndash Physical (carrier-free gene delivery)bull Naked DNAbull Direct Injectionbull Electroporationbull Gene-Gun
ndash Chemical (synthetic vector-based gene delivery)bull Lipoplex Vectorsbull Polyplexesbull Dendrimeric Vectorsbull Polypeptide Vectorsbull Inorganic Nanoparticles
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 9 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEntrance Into Cells
Delivery systems that are not degraded phagocytosed or cleared by the kidney must leave the bloodstream by traversing the endothelium to reach other tissues This occurs most readily in tissues whose endothelia are discontinuous (fenestrated) such as the liver and many solid tumours
Most siRNA delivery systems undergo cellular internalization through endocytosis
Various delivery systems aim to improve the rate of cellular uptake by incorporating targeting ligands that bind specifically to receptors on target cells to induce receptor-mediated endocytosis
Other systems use cell-penetrating peptides that can induce cell uptake through endocytosis or non-endocytic mechanisms
Gene Delivery Slide 10 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEntrance Into Cells
Commonly used targeting ligands include ndash Aptamersndash Cell penetrating peptidesndash Antibodiesndash Peptides or proteinsndash Small molecule ligands
Gene Delivery Slide 11 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEndosome Escape
The delivery of nonviral gene vehicles almost invariably involves endocytosis and escaping from endosomes before they traffic into lysosomes is an essential step to avoid enzymatic degradation
Cationic lipid complexes can bind to anionic lipids on the endosome membrane and form neutral ion pairs These ion-pairs destabilize the endosome membrane and promote de-assembly of the lipoplex
Polymers and peptides with high buffer capacity between pH 72 and 50 such as PEI or peptides containing the cationic amino group lysine arginine and histidine could buffer the endosome This would cause more protons to enter into the endosomes followed by chloride ions leading to increased osmotic pressure and endosome rupture (ldquoproton sponge effectrdquo)
Stimuli other than pH have been used to destabilize endosome membranes Lipid or polymer derivatives which are sensitive to sulfhydryl reduction and enzymatic cleavage have been used to construct nonviral gene vectors
Gene Delivery Slide 12 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEndosome Escape
Gene Delivery Slide 13 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
The final target destination of antisense oligonucleotides siRNAmiRNA and mRNA is the cytoplasm whereas pDNA must be transported into the nucleus for gene expression
Nuclear transport generally occurs through nuclear pore complexes(NPCs) however nucleic acid condensates are impermeable through nuclear pore complexes due to their large size
In dividing cells the nuclear envelope disassembles during mitosis pDNA transfection can only occur at this stage
For nondividing cells the mechanisms of DNA nuclear transport are of critical importance
Gene Delivery Slide 14 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nuclear Pore Complex
Gene Delivery Slide 15 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
The NPC is freely permeable to small molecules metabolites and ions but acts as a highly efficient molecular sieve for macromolecules
Transport of almost all macromolecules into and out of the nucleus is achieved requires the assistance of soluble nuclear transport factors (NTFs) and transport signals
The NTFs specifically bind transport signals found on their cognate substrates and translocate them through the NPC channel
The best-studied transport signals are found on nuclear protein cargoes Such signals consist of short amino acid sequences called nuclear localization sequences (NlSs for import) or nuclear export sequences (NESs for export)
Nuclear Pore Complex
Gene Delivery Slide 16 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
To facilitate nuclear targeting many nuclear localization signal (NLS) peptides have been studied to allow DNA nuclear entry through nuclear pore complexes by active transport
NLSs are short clusters of amino acids that can bind to cytoplasmic receptors known as importins NLS peptides can bind to DNA either through noncovalent electrostatic interaction or by covalent attachment
The most well-known and popularly used NLS is from the large tumor antigen of simian virus 40 (SV40)
Some DNA sequences themselves have nuclear import activity based on their ability to bind to cell-specific transcription factors
Gene Delivery Slide 17 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Systems The most important and most difficult challenge in gene therapy is
the issue of delivery
Not only must the therapy evade the RES as it circulates after systemic administration but it must also cross several barriers before it arrives in the cytoplasm or nucleus of its target cells
So there is a need to develop a safe and efficient gene transfection therapy system
Carry-over material of a GDS can pass through the cell membrane and in some instances enter the nucleus
Carry-over material are called vectors
Gene Delivery Slide 18 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Vectors
A vector can be described as a system fulfilling several functions including
ndash Enabling delivery of genes into the target cells and their nucleus ndash Providing protection from gene degradationndash Ensuring gene transcription in the cell
Gene therapy vectors should not only be targeted and safe but also protected from degradation sequestration or immune attack
However it has to be inexpensive and easy to produce and purify in large amounts and at high concentrations
Gene Delivery Slide 19 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Categorization
Gene delivery systems can be classified into two categories based on the origin of the gene carrier
ndash Viral gene delivery systems use recombinant viruses as carriersndash Non-viral gene delivery system
bull Physical (carrier-free gene delivery)bull Chemical (synthetic vector-based gene delivery
Each vector has its own advantages and disadvantages
None of these types of vectors has been found to be ideal for both safe and efficient gene transfer and stable and sufficient gene expression
Gene Delivery Slide 20 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Delivery Systems
Viral techniques use various classes of viruses for gene delivery
Viruses introduce their genome into the cells with high efficiency
However there are limitations including a strong immune response triggered by the expression of viral genes oncogenic insertions into the genome and unstable maintenance of viruses in the host cell
Gene therapy vectors are being developed by genetic modification of retroviruses adenoviruses poxviruses parvoviruses (adeno-associated viruses) herpesviruses and others
Gene Delivery Slide 21 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Replication These vectors are engineered by deleting the essential genes
which allow replication assembling or infection
But on the other hand vectors need to be produced in large amounts of virus particles
Specialized cell lines called ldquopackaging cell linesrdquo (PCLs) engineered to replace a function of a deleted viral gene Removed virus genes are inserted into the genome of the packaging cells and can be expressed there
The process by which the function of the deleted viral gene is supplied by a protein encoded in the PCL genome is called ldquocomplementationrdquo
Gene Delivery Slide 22 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vectors
Gene Delivery Slide 23 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Non-viral techniques of gene transfer represent a simple and more
importantly safer alternative to viral vectors
Because of their relatively simple quantitative production and low immunogenicity these vectors are attractive tools in gene therapy
Ongoing studies and the development of new vectors that show transfection efficiency just like that of viral vectors point towards their great potential
The main advantage is a virtually unlimited clone capacity low toxicity and immunogenicity of non-viral vectors and the ability of repeated application
Gene Delivery Slide 24 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Non-viral Gene Delivery
Viruses are naturally occurring being which are specialized for transfection
So they inherently can pass the barriers to gene delivery and transfer their genetic material into host
For non-viral delivery systems these abilities should be designed in the vector
Gene Delivery Slide 25 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-viral Gene Delivery Systems Non-viral gene delivery system can be categorized to
ndash Physical (carrier-free gene delivery)bull Naked DNAbull Direct Injectionbull Electroporationbull Gene-Gun
ndash Chemical (synthetic vector-based gene delivery)bull Lipoplex Vectorsbull Polyplexesbull Dendrimeric Vectorsbull Polypeptide Vectorsbull Inorganic Nanoparticles
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 10 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEntrance Into Cells
Commonly used targeting ligands include ndash Aptamersndash Cell penetrating peptidesndash Antibodiesndash Peptides or proteinsndash Small molecule ligands
Gene Delivery Slide 11 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEndosome Escape
The delivery of nonviral gene vehicles almost invariably involves endocytosis and escaping from endosomes before they traffic into lysosomes is an essential step to avoid enzymatic degradation
Cationic lipid complexes can bind to anionic lipids on the endosome membrane and form neutral ion pairs These ion-pairs destabilize the endosome membrane and promote de-assembly of the lipoplex
Polymers and peptides with high buffer capacity between pH 72 and 50 such as PEI or peptides containing the cationic amino group lysine arginine and histidine could buffer the endosome This would cause more protons to enter into the endosomes followed by chloride ions leading to increased osmotic pressure and endosome rupture (ldquoproton sponge effectrdquo)
Stimuli other than pH have been used to destabilize endosome membranes Lipid or polymer derivatives which are sensitive to sulfhydryl reduction and enzymatic cleavage have been used to construct nonviral gene vectors
Gene Delivery Slide 12 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEndosome Escape
Gene Delivery Slide 13 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
The final target destination of antisense oligonucleotides siRNAmiRNA and mRNA is the cytoplasm whereas pDNA must be transported into the nucleus for gene expression
Nuclear transport generally occurs through nuclear pore complexes(NPCs) however nucleic acid condensates are impermeable through nuclear pore complexes due to their large size
In dividing cells the nuclear envelope disassembles during mitosis pDNA transfection can only occur at this stage
For nondividing cells the mechanisms of DNA nuclear transport are of critical importance
Gene Delivery Slide 14 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nuclear Pore Complex
Gene Delivery Slide 15 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
The NPC is freely permeable to small molecules metabolites and ions but acts as a highly efficient molecular sieve for macromolecules
Transport of almost all macromolecules into and out of the nucleus is achieved requires the assistance of soluble nuclear transport factors (NTFs) and transport signals
The NTFs specifically bind transport signals found on their cognate substrates and translocate them through the NPC channel
The best-studied transport signals are found on nuclear protein cargoes Such signals consist of short amino acid sequences called nuclear localization sequences (NlSs for import) or nuclear export sequences (NESs for export)
Nuclear Pore Complex
Gene Delivery Slide 16 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
To facilitate nuclear targeting many nuclear localization signal (NLS) peptides have been studied to allow DNA nuclear entry through nuclear pore complexes by active transport
NLSs are short clusters of amino acids that can bind to cytoplasmic receptors known as importins NLS peptides can bind to DNA either through noncovalent electrostatic interaction or by covalent attachment
The most well-known and popularly used NLS is from the large tumor antigen of simian virus 40 (SV40)
Some DNA sequences themselves have nuclear import activity based on their ability to bind to cell-specific transcription factors
Gene Delivery Slide 17 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Systems The most important and most difficult challenge in gene therapy is
the issue of delivery
Not only must the therapy evade the RES as it circulates after systemic administration but it must also cross several barriers before it arrives in the cytoplasm or nucleus of its target cells
So there is a need to develop a safe and efficient gene transfection therapy system
Carry-over material of a GDS can pass through the cell membrane and in some instances enter the nucleus
Carry-over material are called vectors
Gene Delivery Slide 18 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Vectors
A vector can be described as a system fulfilling several functions including
ndash Enabling delivery of genes into the target cells and their nucleus ndash Providing protection from gene degradationndash Ensuring gene transcription in the cell
Gene therapy vectors should not only be targeted and safe but also protected from degradation sequestration or immune attack
However it has to be inexpensive and easy to produce and purify in large amounts and at high concentrations
Gene Delivery Slide 19 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Categorization
Gene delivery systems can be classified into two categories based on the origin of the gene carrier
ndash Viral gene delivery systems use recombinant viruses as carriersndash Non-viral gene delivery system
bull Physical (carrier-free gene delivery)bull Chemical (synthetic vector-based gene delivery
Each vector has its own advantages and disadvantages
None of these types of vectors has been found to be ideal for both safe and efficient gene transfer and stable and sufficient gene expression
Gene Delivery Slide 20 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Delivery Systems
Viral techniques use various classes of viruses for gene delivery
Viruses introduce their genome into the cells with high efficiency
However there are limitations including a strong immune response triggered by the expression of viral genes oncogenic insertions into the genome and unstable maintenance of viruses in the host cell
Gene therapy vectors are being developed by genetic modification of retroviruses adenoviruses poxviruses parvoviruses (adeno-associated viruses) herpesviruses and others
Gene Delivery Slide 21 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Replication These vectors are engineered by deleting the essential genes
which allow replication assembling or infection
But on the other hand vectors need to be produced in large amounts of virus particles
Specialized cell lines called ldquopackaging cell linesrdquo (PCLs) engineered to replace a function of a deleted viral gene Removed virus genes are inserted into the genome of the packaging cells and can be expressed there
The process by which the function of the deleted viral gene is supplied by a protein encoded in the PCL genome is called ldquocomplementationrdquo
Gene Delivery Slide 22 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vectors
Gene Delivery Slide 23 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Non-viral techniques of gene transfer represent a simple and more
importantly safer alternative to viral vectors
Because of their relatively simple quantitative production and low immunogenicity these vectors are attractive tools in gene therapy
Ongoing studies and the development of new vectors that show transfection efficiency just like that of viral vectors point towards their great potential
The main advantage is a virtually unlimited clone capacity low toxicity and immunogenicity of non-viral vectors and the ability of repeated application
Gene Delivery Slide 24 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Non-viral Gene Delivery
Viruses are naturally occurring being which are specialized for transfection
So they inherently can pass the barriers to gene delivery and transfer their genetic material into host
For non-viral delivery systems these abilities should be designed in the vector
Gene Delivery Slide 25 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-viral Gene Delivery Systems Non-viral gene delivery system can be categorized to
ndash Physical (carrier-free gene delivery)bull Naked DNAbull Direct Injectionbull Electroporationbull Gene-Gun
ndash Chemical (synthetic vector-based gene delivery)bull Lipoplex Vectorsbull Polyplexesbull Dendrimeric Vectorsbull Polypeptide Vectorsbull Inorganic Nanoparticles
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 11 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEndosome Escape
The delivery of nonviral gene vehicles almost invariably involves endocytosis and escaping from endosomes before they traffic into lysosomes is an essential step to avoid enzymatic degradation
Cationic lipid complexes can bind to anionic lipids on the endosome membrane and form neutral ion pairs These ion-pairs destabilize the endosome membrane and promote de-assembly of the lipoplex
Polymers and peptides with high buffer capacity between pH 72 and 50 such as PEI or peptides containing the cationic amino group lysine arginine and histidine could buffer the endosome This would cause more protons to enter into the endosomes followed by chloride ions leading to increased osmotic pressure and endosome rupture (ldquoproton sponge effectrdquo)
Stimuli other than pH have been used to destabilize endosome membranes Lipid or polymer derivatives which are sensitive to sulfhydryl reduction and enzymatic cleavage have been used to construct nonviral gene vectors
Gene Delivery Slide 12 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEndosome Escape
Gene Delivery Slide 13 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
The final target destination of antisense oligonucleotides siRNAmiRNA and mRNA is the cytoplasm whereas pDNA must be transported into the nucleus for gene expression
Nuclear transport generally occurs through nuclear pore complexes(NPCs) however nucleic acid condensates are impermeable through nuclear pore complexes due to their large size
In dividing cells the nuclear envelope disassembles during mitosis pDNA transfection can only occur at this stage
For nondividing cells the mechanisms of DNA nuclear transport are of critical importance
Gene Delivery Slide 14 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nuclear Pore Complex
Gene Delivery Slide 15 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
The NPC is freely permeable to small molecules metabolites and ions but acts as a highly efficient molecular sieve for macromolecules
Transport of almost all macromolecules into and out of the nucleus is achieved requires the assistance of soluble nuclear transport factors (NTFs) and transport signals
The NTFs specifically bind transport signals found on their cognate substrates and translocate them through the NPC channel
The best-studied transport signals are found on nuclear protein cargoes Such signals consist of short amino acid sequences called nuclear localization sequences (NlSs for import) or nuclear export sequences (NESs for export)
Nuclear Pore Complex
Gene Delivery Slide 16 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
To facilitate nuclear targeting many nuclear localization signal (NLS) peptides have been studied to allow DNA nuclear entry through nuclear pore complexes by active transport
NLSs are short clusters of amino acids that can bind to cytoplasmic receptors known as importins NLS peptides can bind to DNA either through noncovalent electrostatic interaction or by covalent attachment
The most well-known and popularly used NLS is from the large tumor antigen of simian virus 40 (SV40)
Some DNA sequences themselves have nuclear import activity based on their ability to bind to cell-specific transcription factors
Gene Delivery Slide 17 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Systems The most important and most difficult challenge in gene therapy is
the issue of delivery
Not only must the therapy evade the RES as it circulates after systemic administration but it must also cross several barriers before it arrives in the cytoplasm or nucleus of its target cells
So there is a need to develop a safe and efficient gene transfection therapy system
Carry-over material of a GDS can pass through the cell membrane and in some instances enter the nucleus
Carry-over material are called vectors
Gene Delivery Slide 18 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Vectors
A vector can be described as a system fulfilling several functions including
ndash Enabling delivery of genes into the target cells and their nucleus ndash Providing protection from gene degradationndash Ensuring gene transcription in the cell
Gene therapy vectors should not only be targeted and safe but also protected from degradation sequestration or immune attack
However it has to be inexpensive and easy to produce and purify in large amounts and at high concentrations
Gene Delivery Slide 19 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Categorization
Gene delivery systems can be classified into two categories based on the origin of the gene carrier
ndash Viral gene delivery systems use recombinant viruses as carriersndash Non-viral gene delivery system
bull Physical (carrier-free gene delivery)bull Chemical (synthetic vector-based gene delivery
Each vector has its own advantages and disadvantages
None of these types of vectors has been found to be ideal for both safe and efficient gene transfer and stable and sufficient gene expression
Gene Delivery Slide 20 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Delivery Systems
Viral techniques use various classes of viruses for gene delivery
Viruses introduce their genome into the cells with high efficiency
However there are limitations including a strong immune response triggered by the expression of viral genes oncogenic insertions into the genome and unstable maintenance of viruses in the host cell
Gene therapy vectors are being developed by genetic modification of retroviruses adenoviruses poxviruses parvoviruses (adeno-associated viruses) herpesviruses and others
Gene Delivery Slide 21 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Replication These vectors are engineered by deleting the essential genes
which allow replication assembling or infection
But on the other hand vectors need to be produced in large amounts of virus particles
Specialized cell lines called ldquopackaging cell linesrdquo (PCLs) engineered to replace a function of a deleted viral gene Removed virus genes are inserted into the genome of the packaging cells and can be expressed there
The process by which the function of the deleted viral gene is supplied by a protein encoded in the PCL genome is called ldquocomplementationrdquo
Gene Delivery Slide 22 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vectors
Gene Delivery Slide 23 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Non-viral techniques of gene transfer represent a simple and more
importantly safer alternative to viral vectors
Because of their relatively simple quantitative production and low immunogenicity these vectors are attractive tools in gene therapy
Ongoing studies and the development of new vectors that show transfection efficiency just like that of viral vectors point towards their great potential
The main advantage is a virtually unlimited clone capacity low toxicity and immunogenicity of non-viral vectors and the ability of repeated application
Gene Delivery Slide 24 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Non-viral Gene Delivery
Viruses are naturally occurring being which are specialized for transfection
So they inherently can pass the barriers to gene delivery and transfer their genetic material into host
For non-viral delivery systems these abilities should be designed in the vector
Gene Delivery Slide 25 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-viral Gene Delivery Systems Non-viral gene delivery system can be categorized to
ndash Physical (carrier-free gene delivery)bull Naked DNAbull Direct Injectionbull Electroporationbull Gene-Gun
ndash Chemical (synthetic vector-based gene delivery)bull Lipoplex Vectorsbull Polyplexesbull Dendrimeric Vectorsbull Polypeptide Vectorsbull Inorganic Nanoparticles
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 12 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryEndosome Escape
Gene Delivery Slide 13 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
The final target destination of antisense oligonucleotides siRNAmiRNA and mRNA is the cytoplasm whereas pDNA must be transported into the nucleus for gene expression
Nuclear transport generally occurs through nuclear pore complexes(NPCs) however nucleic acid condensates are impermeable through nuclear pore complexes due to their large size
In dividing cells the nuclear envelope disassembles during mitosis pDNA transfection can only occur at this stage
For nondividing cells the mechanisms of DNA nuclear transport are of critical importance
Gene Delivery Slide 14 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nuclear Pore Complex
Gene Delivery Slide 15 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
The NPC is freely permeable to small molecules metabolites and ions but acts as a highly efficient molecular sieve for macromolecules
Transport of almost all macromolecules into and out of the nucleus is achieved requires the assistance of soluble nuclear transport factors (NTFs) and transport signals
The NTFs specifically bind transport signals found on their cognate substrates and translocate them through the NPC channel
The best-studied transport signals are found on nuclear protein cargoes Such signals consist of short amino acid sequences called nuclear localization sequences (NlSs for import) or nuclear export sequences (NESs for export)
Nuclear Pore Complex
Gene Delivery Slide 16 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
To facilitate nuclear targeting many nuclear localization signal (NLS) peptides have been studied to allow DNA nuclear entry through nuclear pore complexes by active transport
NLSs are short clusters of amino acids that can bind to cytoplasmic receptors known as importins NLS peptides can bind to DNA either through noncovalent electrostatic interaction or by covalent attachment
The most well-known and popularly used NLS is from the large tumor antigen of simian virus 40 (SV40)
Some DNA sequences themselves have nuclear import activity based on their ability to bind to cell-specific transcription factors
Gene Delivery Slide 17 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Systems The most important and most difficult challenge in gene therapy is
the issue of delivery
Not only must the therapy evade the RES as it circulates after systemic administration but it must also cross several barriers before it arrives in the cytoplasm or nucleus of its target cells
So there is a need to develop a safe and efficient gene transfection therapy system
Carry-over material of a GDS can pass through the cell membrane and in some instances enter the nucleus
Carry-over material are called vectors
Gene Delivery Slide 18 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Vectors
A vector can be described as a system fulfilling several functions including
ndash Enabling delivery of genes into the target cells and their nucleus ndash Providing protection from gene degradationndash Ensuring gene transcription in the cell
Gene therapy vectors should not only be targeted and safe but also protected from degradation sequestration or immune attack
However it has to be inexpensive and easy to produce and purify in large amounts and at high concentrations
Gene Delivery Slide 19 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Categorization
Gene delivery systems can be classified into two categories based on the origin of the gene carrier
ndash Viral gene delivery systems use recombinant viruses as carriersndash Non-viral gene delivery system
bull Physical (carrier-free gene delivery)bull Chemical (synthetic vector-based gene delivery
Each vector has its own advantages and disadvantages
None of these types of vectors has been found to be ideal for both safe and efficient gene transfer and stable and sufficient gene expression
Gene Delivery Slide 20 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Delivery Systems
Viral techniques use various classes of viruses for gene delivery
Viruses introduce their genome into the cells with high efficiency
However there are limitations including a strong immune response triggered by the expression of viral genes oncogenic insertions into the genome and unstable maintenance of viruses in the host cell
Gene therapy vectors are being developed by genetic modification of retroviruses adenoviruses poxviruses parvoviruses (adeno-associated viruses) herpesviruses and others
Gene Delivery Slide 21 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Replication These vectors are engineered by deleting the essential genes
which allow replication assembling or infection
But on the other hand vectors need to be produced in large amounts of virus particles
Specialized cell lines called ldquopackaging cell linesrdquo (PCLs) engineered to replace a function of a deleted viral gene Removed virus genes are inserted into the genome of the packaging cells and can be expressed there
The process by which the function of the deleted viral gene is supplied by a protein encoded in the PCL genome is called ldquocomplementationrdquo
Gene Delivery Slide 22 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vectors
Gene Delivery Slide 23 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Non-viral techniques of gene transfer represent a simple and more
importantly safer alternative to viral vectors
Because of their relatively simple quantitative production and low immunogenicity these vectors are attractive tools in gene therapy
Ongoing studies and the development of new vectors that show transfection efficiency just like that of viral vectors point towards their great potential
The main advantage is a virtually unlimited clone capacity low toxicity and immunogenicity of non-viral vectors and the ability of repeated application
Gene Delivery Slide 24 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Non-viral Gene Delivery
Viruses are naturally occurring being which are specialized for transfection
So they inherently can pass the barriers to gene delivery and transfer their genetic material into host
For non-viral delivery systems these abilities should be designed in the vector
Gene Delivery Slide 25 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-viral Gene Delivery Systems Non-viral gene delivery system can be categorized to
ndash Physical (carrier-free gene delivery)bull Naked DNAbull Direct Injectionbull Electroporationbull Gene-Gun
ndash Chemical (synthetic vector-based gene delivery)bull Lipoplex Vectorsbull Polyplexesbull Dendrimeric Vectorsbull Polypeptide Vectorsbull Inorganic Nanoparticles
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 13 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
The final target destination of antisense oligonucleotides siRNAmiRNA and mRNA is the cytoplasm whereas pDNA must be transported into the nucleus for gene expression
Nuclear transport generally occurs through nuclear pore complexes(NPCs) however nucleic acid condensates are impermeable through nuclear pore complexes due to their large size
In dividing cells the nuclear envelope disassembles during mitosis pDNA transfection can only occur at this stage
For nondividing cells the mechanisms of DNA nuclear transport are of critical importance
Gene Delivery Slide 14 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nuclear Pore Complex
Gene Delivery Slide 15 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
The NPC is freely permeable to small molecules metabolites and ions but acts as a highly efficient molecular sieve for macromolecules
Transport of almost all macromolecules into and out of the nucleus is achieved requires the assistance of soluble nuclear transport factors (NTFs) and transport signals
The NTFs specifically bind transport signals found on their cognate substrates and translocate them through the NPC channel
The best-studied transport signals are found on nuclear protein cargoes Such signals consist of short amino acid sequences called nuclear localization sequences (NlSs for import) or nuclear export sequences (NESs for export)
Nuclear Pore Complex
Gene Delivery Slide 16 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
To facilitate nuclear targeting many nuclear localization signal (NLS) peptides have been studied to allow DNA nuclear entry through nuclear pore complexes by active transport
NLSs are short clusters of amino acids that can bind to cytoplasmic receptors known as importins NLS peptides can bind to DNA either through noncovalent electrostatic interaction or by covalent attachment
The most well-known and popularly used NLS is from the large tumor antigen of simian virus 40 (SV40)
Some DNA sequences themselves have nuclear import activity based on their ability to bind to cell-specific transcription factors
Gene Delivery Slide 17 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Systems The most important and most difficult challenge in gene therapy is
the issue of delivery
Not only must the therapy evade the RES as it circulates after systemic administration but it must also cross several barriers before it arrives in the cytoplasm or nucleus of its target cells
So there is a need to develop a safe and efficient gene transfection therapy system
Carry-over material of a GDS can pass through the cell membrane and in some instances enter the nucleus
Carry-over material are called vectors
Gene Delivery Slide 18 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Vectors
A vector can be described as a system fulfilling several functions including
ndash Enabling delivery of genes into the target cells and their nucleus ndash Providing protection from gene degradationndash Ensuring gene transcription in the cell
Gene therapy vectors should not only be targeted and safe but also protected from degradation sequestration or immune attack
However it has to be inexpensive and easy to produce and purify in large amounts and at high concentrations
Gene Delivery Slide 19 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Categorization
Gene delivery systems can be classified into two categories based on the origin of the gene carrier
ndash Viral gene delivery systems use recombinant viruses as carriersndash Non-viral gene delivery system
bull Physical (carrier-free gene delivery)bull Chemical (synthetic vector-based gene delivery
Each vector has its own advantages and disadvantages
None of these types of vectors has been found to be ideal for both safe and efficient gene transfer and stable and sufficient gene expression
Gene Delivery Slide 20 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Delivery Systems
Viral techniques use various classes of viruses for gene delivery
Viruses introduce their genome into the cells with high efficiency
However there are limitations including a strong immune response triggered by the expression of viral genes oncogenic insertions into the genome and unstable maintenance of viruses in the host cell
Gene therapy vectors are being developed by genetic modification of retroviruses adenoviruses poxviruses parvoviruses (adeno-associated viruses) herpesviruses and others
Gene Delivery Slide 21 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Replication These vectors are engineered by deleting the essential genes
which allow replication assembling or infection
But on the other hand vectors need to be produced in large amounts of virus particles
Specialized cell lines called ldquopackaging cell linesrdquo (PCLs) engineered to replace a function of a deleted viral gene Removed virus genes are inserted into the genome of the packaging cells and can be expressed there
The process by which the function of the deleted viral gene is supplied by a protein encoded in the PCL genome is called ldquocomplementationrdquo
Gene Delivery Slide 22 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vectors
Gene Delivery Slide 23 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Non-viral techniques of gene transfer represent a simple and more
importantly safer alternative to viral vectors
Because of their relatively simple quantitative production and low immunogenicity these vectors are attractive tools in gene therapy
Ongoing studies and the development of new vectors that show transfection efficiency just like that of viral vectors point towards their great potential
The main advantage is a virtually unlimited clone capacity low toxicity and immunogenicity of non-viral vectors and the ability of repeated application
Gene Delivery Slide 24 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Non-viral Gene Delivery
Viruses are naturally occurring being which are specialized for transfection
So they inherently can pass the barriers to gene delivery and transfer their genetic material into host
For non-viral delivery systems these abilities should be designed in the vector
Gene Delivery Slide 25 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-viral Gene Delivery Systems Non-viral gene delivery system can be categorized to
ndash Physical (carrier-free gene delivery)bull Naked DNAbull Direct Injectionbull Electroporationbull Gene-Gun
ndash Chemical (synthetic vector-based gene delivery)bull Lipoplex Vectorsbull Polyplexesbull Dendrimeric Vectorsbull Polypeptide Vectorsbull Inorganic Nanoparticles
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 14 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nuclear Pore Complex
Gene Delivery Slide 15 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
The NPC is freely permeable to small molecules metabolites and ions but acts as a highly efficient molecular sieve for macromolecules
Transport of almost all macromolecules into and out of the nucleus is achieved requires the assistance of soluble nuclear transport factors (NTFs) and transport signals
The NTFs specifically bind transport signals found on their cognate substrates and translocate them through the NPC channel
The best-studied transport signals are found on nuclear protein cargoes Such signals consist of short amino acid sequences called nuclear localization sequences (NlSs for import) or nuclear export sequences (NESs for export)
Nuclear Pore Complex
Gene Delivery Slide 16 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
To facilitate nuclear targeting many nuclear localization signal (NLS) peptides have been studied to allow DNA nuclear entry through nuclear pore complexes by active transport
NLSs are short clusters of amino acids that can bind to cytoplasmic receptors known as importins NLS peptides can bind to DNA either through noncovalent electrostatic interaction or by covalent attachment
The most well-known and popularly used NLS is from the large tumor antigen of simian virus 40 (SV40)
Some DNA sequences themselves have nuclear import activity based on their ability to bind to cell-specific transcription factors
Gene Delivery Slide 17 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Systems The most important and most difficult challenge in gene therapy is
the issue of delivery
Not only must the therapy evade the RES as it circulates after systemic administration but it must also cross several barriers before it arrives in the cytoplasm or nucleus of its target cells
So there is a need to develop a safe and efficient gene transfection therapy system
Carry-over material of a GDS can pass through the cell membrane and in some instances enter the nucleus
Carry-over material are called vectors
Gene Delivery Slide 18 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Vectors
A vector can be described as a system fulfilling several functions including
ndash Enabling delivery of genes into the target cells and their nucleus ndash Providing protection from gene degradationndash Ensuring gene transcription in the cell
Gene therapy vectors should not only be targeted and safe but also protected from degradation sequestration or immune attack
However it has to be inexpensive and easy to produce and purify in large amounts and at high concentrations
Gene Delivery Slide 19 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Categorization
Gene delivery systems can be classified into two categories based on the origin of the gene carrier
ndash Viral gene delivery systems use recombinant viruses as carriersndash Non-viral gene delivery system
bull Physical (carrier-free gene delivery)bull Chemical (synthetic vector-based gene delivery
Each vector has its own advantages and disadvantages
None of these types of vectors has been found to be ideal for both safe and efficient gene transfer and stable and sufficient gene expression
Gene Delivery Slide 20 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Delivery Systems
Viral techniques use various classes of viruses for gene delivery
Viruses introduce their genome into the cells with high efficiency
However there are limitations including a strong immune response triggered by the expression of viral genes oncogenic insertions into the genome and unstable maintenance of viruses in the host cell
Gene therapy vectors are being developed by genetic modification of retroviruses adenoviruses poxviruses parvoviruses (adeno-associated viruses) herpesviruses and others
Gene Delivery Slide 21 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Replication These vectors are engineered by deleting the essential genes
which allow replication assembling or infection
But on the other hand vectors need to be produced in large amounts of virus particles
Specialized cell lines called ldquopackaging cell linesrdquo (PCLs) engineered to replace a function of a deleted viral gene Removed virus genes are inserted into the genome of the packaging cells and can be expressed there
The process by which the function of the deleted viral gene is supplied by a protein encoded in the PCL genome is called ldquocomplementationrdquo
Gene Delivery Slide 22 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vectors
Gene Delivery Slide 23 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Non-viral techniques of gene transfer represent a simple and more
importantly safer alternative to viral vectors
Because of their relatively simple quantitative production and low immunogenicity these vectors are attractive tools in gene therapy
Ongoing studies and the development of new vectors that show transfection efficiency just like that of viral vectors point towards their great potential
The main advantage is a virtually unlimited clone capacity low toxicity and immunogenicity of non-viral vectors and the ability of repeated application
Gene Delivery Slide 24 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Non-viral Gene Delivery
Viruses are naturally occurring being which are specialized for transfection
So they inherently can pass the barriers to gene delivery and transfer their genetic material into host
For non-viral delivery systems these abilities should be designed in the vector
Gene Delivery Slide 25 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-viral Gene Delivery Systems Non-viral gene delivery system can be categorized to
ndash Physical (carrier-free gene delivery)bull Naked DNAbull Direct Injectionbull Electroporationbull Gene-Gun
ndash Chemical (synthetic vector-based gene delivery)bull Lipoplex Vectorsbull Polyplexesbull Dendrimeric Vectorsbull Polypeptide Vectorsbull Inorganic Nanoparticles
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 15 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
The NPC is freely permeable to small molecules metabolites and ions but acts as a highly efficient molecular sieve for macromolecules
Transport of almost all macromolecules into and out of the nucleus is achieved requires the assistance of soluble nuclear transport factors (NTFs) and transport signals
The NTFs specifically bind transport signals found on their cognate substrates and translocate them through the NPC channel
The best-studied transport signals are found on nuclear protein cargoes Such signals consist of short amino acid sequences called nuclear localization sequences (NlSs for import) or nuclear export sequences (NESs for export)
Nuclear Pore Complex
Gene Delivery Slide 16 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
To facilitate nuclear targeting many nuclear localization signal (NLS) peptides have been studied to allow DNA nuclear entry through nuclear pore complexes by active transport
NLSs are short clusters of amino acids that can bind to cytoplasmic receptors known as importins NLS peptides can bind to DNA either through noncovalent electrostatic interaction or by covalent attachment
The most well-known and popularly used NLS is from the large tumor antigen of simian virus 40 (SV40)
Some DNA sequences themselves have nuclear import activity based on their ability to bind to cell-specific transcription factors
Gene Delivery Slide 17 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Systems The most important and most difficult challenge in gene therapy is
the issue of delivery
Not only must the therapy evade the RES as it circulates after systemic administration but it must also cross several barriers before it arrives in the cytoplasm or nucleus of its target cells
So there is a need to develop a safe and efficient gene transfection therapy system
Carry-over material of a GDS can pass through the cell membrane and in some instances enter the nucleus
Carry-over material are called vectors
Gene Delivery Slide 18 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Vectors
A vector can be described as a system fulfilling several functions including
ndash Enabling delivery of genes into the target cells and their nucleus ndash Providing protection from gene degradationndash Ensuring gene transcription in the cell
Gene therapy vectors should not only be targeted and safe but also protected from degradation sequestration or immune attack
However it has to be inexpensive and easy to produce and purify in large amounts and at high concentrations
Gene Delivery Slide 19 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Categorization
Gene delivery systems can be classified into two categories based on the origin of the gene carrier
ndash Viral gene delivery systems use recombinant viruses as carriersndash Non-viral gene delivery system
bull Physical (carrier-free gene delivery)bull Chemical (synthetic vector-based gene delivery
Each vector has its own advantages and disadvantages
None of these types of vectors has been found to be ideal for both safe and efficient gene transfer and stable and sufficient gene expression
Gene Delivery Slide 20 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Delivery Systems
Viral techniques use various classes of viruses for gene delivery
Viruses introduce their genome into the cells with high efficiency
However there are limitations including a strong immune response triggered by the expression of viral genes oncogenic insertions into the genome and unstable maintenance of viruses in the host cell
Gene therapy vectors are being developed by genetic modification of retroviruses adenoviruses poxviruses parvoviruses (adeno-associated viruses) herpesviruses and others
Gene Delivery Slide 21 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Replication These vectors are engineered by deleting the essential genes
which allow replication assembling or infection
But on the other hand vectors need to be produced in large amounts of virus particles
Specialized cell lines called ldquopackaging cell linesrdquo (PCLs) engineered to replace a function of a deleted viral gene Removed virus genes are inserted into the genome of the packaging cells and can be expressed there
The process by which the function of the deleted viral gene is supplied by a protein encoded in the PCL genome is called ldquocomplementationrdquo
Gene Delivery Slide 22 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vectors
Gene Delivery Slide 23 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Non-viral techniques of gene transfer represent a simple and more
importantly safer alternative to viral vectors
Because of their relatively simple quantitative production and low immunogenicity these vectors are attractive tools in gene therapy
Ongoing studies and the development of new vectors that show transfection efficiency just like that of viral vectors point towards their great potential
The main advantage is a virtually unlimited clone capacity low toxicity and immunogenicity of non-viral vectors and the ability of repeated application
Gene Delivery Slide 24 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Non-viral Gene Delivery
Viruses are naturally occurring being which are specialized for transfection
So they inherently can pass the barriers to gene delivery and transfer their genetic material into host
For non-viral delivery systems these abilities should be designed in the vector
Gene Delivery Slide 25 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-viral Gene Delivery Systems Non-viral gene delivery system can be categorized to
ndash Physical (carrier-free gene delivery)bull Naked DNAbull Direct Injectionbull Electroporationbull Gene-Gun
ndash Chemical (synthetic vector-based gene delivery)bull Lipoplex Vectorsbull Polyplexesbull Dendrimeric Vectorsbull Polypeptide Vectorsbull Inorganic Nanoparticles
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 16 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Gene DeliveryNuclear Entry
To facilitate nuclear targeting many nuclear localization signal (NLS) peptides have been studied to allow DNA nuclear entry through nuclear pore complexes by active transport
NLSs are short clusters of amino acids that can bind to cytoplasmic receptors known as importins NLS peptides can bind to DNA either through noncovalent electrostatic interaction or by covalent attachment
The most well-known and popularly used NLS is from the large tumor antigen of simian virus 40 (SV40)
Some DNA sequences themselves have nuclear import activity based on their ability to bind to cell-specific transcription factors
Gene Delivery Slide 17 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Systems The most important and most difficult challenge in gene therapy is
the issue of delivery
Not only must the therapy evade the RES as it circulates after systemic administration but it must also cross several barriers before it arrives in the cytoplasm or nucleus of its target cells
So there is a need to develop a safe and efficient gene transfection therapy system
Carry-over material of a GDS can pass through the cell membrane and in some instances enter the nucleus
Carry-over material are called vectors
Gene Delivery Slide 18 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Vectors
A vector can be described as a system fulfilling several functions including
ndash Enabling delivery of genes into the target cells and their nucleus ndash Providing protection from gene degradationndash Ensuring gene transcription in the cell
Gene therapy vectors should not only be targeted and safe but also protected from degradation sequestration or immune attack
However it has to be inexpensive and easy to produce and purify in large amounts and at high concentrations
Gene Delivery Slide 19 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Categorization
Gene delivery systems can be classified into two categories based on the origin of the gene carrier
ndash Viral gene delivery systems use recombinant viruses as carriersndash Non-viral gene delivery system
bull Physical (carrier-free gene delivery)bull Chemical (synthetic vector-based gene delivery
Each vector has its own advantages and disadvantages
None of these types of vectors has been found to be ideal for both safe and efficient gene transfer and stable and sufficient gene expression
Gene Delivery Slide 20 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Delivery Systems
Viral techniques use various classes of viruses for gene delivery
Viruses introduce their genome into the cells with high efficiency
However there are limitations including a strong immune response triggered by the expression of viral genes oncogenic insertions into the genome and unstable maintenance of viruses in the host cell
Gene therapy vectors are being developed by genetic modification of retroviruses adenoviruses poxviruses parvoviruses (adeno-associated viruses) herpesviruses and others
Gene Delivery Slide 21 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Replication These vectors are engineered by deleting the essential genes
which allow replication assembling or infection
But on the other hand vectors need to be produced in large amounts of virus particles
Specialized cell lines called ldquopackaging cell linesrdquo (PCLs) engineered to replace a function of a deleted viral gene Removed virus genes are inserted into the genome of the packaging cells and can be expressed there
The process by which the function of the deleted viral gene is supplied by a protein encoded in the PCL genome is called ldquocomplementationrdquo
Gene Delivery Slide 22 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vectors
Gene Delivery Slide 23 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Non-viral techniques of gene transfer represent a simple and more
importantly safer alternative to viral vectors
Because of their relatively simple quantitative production and low immunogenicity these vectors are attractive tools in gene therapy
Ongoing studies and the development of new vectors that show transfection efficiency just like that of viral vectors point towards their great potential
The main advantage is a virtually unlimited clone capacity low toxicity and immunogenicity of non-viral vectors and the ability of repeated application
Gene Delivery Slide 24 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Non-viral Gene Delivery
Viruses are naturally occurring being which are specialized for transfection
So they inherently can pass the barriers to gene delivery and transfer their genetic material into host
For non-viral delivery systems these abilities should be designed in the vector
Gene Delivery Slide 25 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-viral Gene Delivery Systems Non-viral gene delivery system can be categorized to
ndash Physical (carrier-free gene delivery)bull Naked DNAbull Direct Injectionbull Electroporationbull Gene-Gun
ndash Chemical (synthetic vector-based gene delivery)bull Lipoplex Vectorsbull Polyplexesbull Dendrimeric Vectorsbull Polypeptide Vectorsbull Inorganic Nanoparticles
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 17 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Systems The most important and most difficult challenge in gene therapy is
the issue of delivery
Not only must the therapy evade the RES as it circulates after systemic administration but it must also cross several barriers before it arrives in the cytoplasm or nucleus of its target cells
So there is a need to develop a safe and efficient gene transfection therapy system
Carry-over material of a GDS can pass through the cell membrane and in some instances enter the nucleus
Carry-over material are called vectors
Gene Delivery Slide 18 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Vectors
A vector can be described as a system fulfilling several functions including
ndash Enabling delivery of genes into the target cells and their nucleus ndash Providing protection from gene degradationndash Ensuring gene transcription in the cell
Gene therapy vectors should not only be targeted and safe but also protected from degradation sequestration or immune attack
However it has to be inexpensive and easy to produce and purify in large amounts and at high concentrations
Gene Delivery Slide 19 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Categorization
Gene delivery systems can be classified into two categories based on the origin of the gene carrier
ndash Viral gene delivery systems use recombinant viruses as carriersndash Non-viral gene delivery system
bull Physical (carrier-free gene delivery)bull Chemical (synthetic vector-based gene delivery
Each vector has its own advantages and disadvantages
None of these types of vectors has been found to be ideal for both safe and efficient gene transfer and stable and sufficient gene expression
Gene Delivery Slide 20 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Delivery Systems
Viral techniques use various classes of viruses for gene delivery
Viruses introduce their genome into the cells with high efficiency
However there are limitations including a strong immune response triggered by the expression of viral genes oncogenic insertions into the genome and unstable maintenance of viruses in the host cell
Gene therapy vectors are being developed by genetic modification of retroviruses adenoviruses poxviruses parvoviruses (adeno-associated viruses) herpesviruses and others
Gene Delivery Slide 21 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Replication These vectors are engineered by deleting the essential genes
which allow replication assembling or infection
But on the other hand vectors need to be produced in large amounts of virus particles
Specialized cell lines called ldquopackaging cell linesrdquo (PCLs) engineered to replace a function of a deleted viral gene Removed virus genes are inserted into the genome of the packaging cells and can be expressed there
The process by which the function of the deleted viral gene is supplied by a protein encoded in the PCL genome is called ldquocomplementationrdquo
Gene Delivery Slide 22 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vectors
Gene Delivery Slide 23 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Non-viral techniques of gene transfer represent a simple and more
importantly safer alternative to viral vectors
Because of their relatively simple quantitative production and low immunogenicity these vectors are attractive tools in gene therapy
Ongoing studies and the development of new vectors that show transfection efficiency just like that of viral vectors point towards their great potential
The main advantage is a virtually unlimited clone capacity low toxicity and immunogenicity of non-viral vectors and the ability of repeated application
Gene Delivery Slide 24 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Non-viral Gene Delivery
Viruses are naturally occurring being which are specialized for transfection
So they inherently can pass the barriers to gene delivery and transfer their genetic material into host
For non-viral delivery systems these abilities should be designed in the vector
Gene Delivery Slide 25 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-viral Gene Delivery Systems Non-viral gene delivery system can be categorized to
ndash Physical (carrier-free gene delivery)bull Naked DNAbull Direct Injectionbull Electroporationbull Gene-Gun
ndash Chemical (synthetic vector-based gene delivery)bull Lipoplex Vectorsbull Polyplexesbull Dendrimeric Vectorsbull Polypeptide Vectorsbull Inorganic Nanoparticles
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 18 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Vectors
A vector can be described as a system fulfilling several functions including
ndash Enabling delivery of genes into the target cells and their nucleus ndash Providing protection from gene degradationndash Ensuring gene transcription in the cell
Gene therapy vectors should not only be targeted and safe but also protected from degradation sequestration or immune attack
However it has to be inexpensive and easy to produce and purify in large amounts and at high concentrations
Gene Delivery Slide 19 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Categorization
Gene delivery systems can be classified into two categories based on the origin of the gene carrier
ndash Viral gene delivery systems use recombinant viruses as carriersndash Non-viral gene delivery system
bull Physical (carrier-free gene delivery)bull Chemical (synthetic vector-based gene delivery
Each vector has its own advantages and disadvantages
None of these types of vectors has been found to be ideal for both safe and efficient gene transfer and stable and sufficient gene expression
Gene Delivery Slide 20 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Delivery Systems
Viral techniques use various classes of viruses for gene delivery
Viruses introduce their genome into the cells with high efficiency
However there are limitations including a strong immune response triggered by the expression of viral genes oncogenic insertions into the genome and unstable maintenance of viruses in the host cell
Gene therapy vectors are being developed by genetic modification of retroviruses adenoviruses poxviruses parvoviruses (adeno-associated viruses) herpesviruses and others
Gene Delivery Slide 21 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Replication These vectors are engineered by deleting the essential genes
which allow replication assembling or infection
But on the other hand vectors need to be produced in large amounts of virus particles
Specialized cell lines called ldquopackaging cell linesrdquo (PCLs) engineered to replace a function of a deleted viral gene Removed virus genes are inserted into the genome of the packaging cells and can be expressed there
The process by which the function of the deleted viral gene is supplied by a protein encoded in the PCL genome is called ldquocomplementationrdquo
Gene Delivery Slide 22 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vectors
Gene Delivery Slide 23 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Non-viral techniques of gene transfer represent a simple and more
importantly safer alternative to viral vectors
Because of their relatively simple quantitative production and low immunogenicity these vectors are attractive tools in gene therapy
Ongoing studies and the development of new vectors that show transfection efficiency just like that of viral vectors point towards their great potential
The main advantage is a virtually unlimited clone capacity low toxicity and immunogenicity of non-viral vectors and the ability of repeated application
Gene Delivery Slide 24 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Non-viral Gene Delivery
Viruses are naturally occurring being which are specialized for transfection
So they inherently can pass the barriers to gene delivery and transfer their genetic material into host
For non-viral delivery systems these abilities should be designed in the vector
Gene Delivery Slide 25 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-viral Gene Delivery Systems Non-viral gene delivery system can be categorized to
ndash Physical (carrier-free gene delivery)bull Naked DNAbull Direct Injectionbull Electroporationbull Gene-Gun
ndash Chemical (synthetic vector-based gene delivery)bull Lipoplex Vectorsbull Polyplexesbull Dendrimeric Vectorsbull Polypeptide Vectorsbull Inorganic Nanoparticles
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 19 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Categorization
Gene delivery systems can be classified into two categories based on the origin of the gene carrier
ndash Viral gene delivery systems use recombinant viruses as carriersndash Non-viral gene delivery system
bull Physical (carrier-free gene delivery)bull Chemical (synthetic vector-based gene delivery
Each vector has its own advantages and disadvantages
None of these types of vectors has been found to be ideal for both safe and efficient gene transfer and stable and sufficient gene expression
Gene Delivery Slide 20 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Delivery Systems
Viral techniques use various classes of viruses for gene delivery
Viruses introduce their genome into the cells with high efficiency
However there are limitations including a strong immune response triggered by the expression of viral genes oncogenic insertions into the genome and unstable maintenance of viruses in the host cell
Gene therapy vectors are being developed by genetic modification of retroviruses adenoviruses poxviruses parvoviruses (adeno-associated viruses) herpesviruses and others
Gene Delivery Slide 21 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Replication These vectors are engineered by deleting the essential genes
which allow replication assembling or infection
But on the other hand vectors need to be produced in large amounts of virus particles
Specialized cell lines called ldquopackaging cell linesrdquo (PCLs) engineered to replace a function of a deleted viral gene Removed virus genes are inserted into the genome of the packaging cells and can be expressed there
The process by which the function of the deleted viral gene is supplied by a protein encoded in the PCL genome is called ldquocomplementationrdquo
Gene Delivery Slide 22 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vectors
Gene Delivery Slide 23 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Non-viral techniques of gene transfer represent a simple and more
importantly safer alternative to viral vectors
Because of their relatively simple quantitative production and low immunogenicity these vectors are attractive tools in gene therapy
Ongoing studies and the development of new vectors that show transfection efficiency just like that of viral vectors point towards their great potential
The main advantage is a virtually unlimited clone capacity low toxicity and immunogenicity of non-viral vectors and the ability of repeated application
Gene Delivery Slide 24 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Non-viral Gene Delivery
Viruses are naturally occurring being which are specialized for transfection
So they inherently can pass the barriers to gene delivery and transfer their genetic material into host
For non-viral delivery systems these abilities should be designed in the vector
Gene Delivery Slide 25 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-viral Gene Delivery Systems Non-viral gene delivery system can be categorized to
ndash Physical (carrier-free gene delivery)bull Naked DNAbull Direct Injectionbull Electroporationbull Gene-Gun
ndash Chemical (synthetic vector-based gene delivery)bull Lipoplex Vectorsbull Polyplexesbull Dendrimeric Vectorsbull Polypeptide Vectorsbull Inorganic Nanoparticles
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 20 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Delivery Systems
Viral techniques use various classes of viruses for gene delivery
Viruses introduce their genome into the cells with high efficiency
However there are limitations including a strong immune response triggered by the expression of viral genes oncogenic insertions into the genome and unstable maintenance of viruses in the host cell
Gene therapy vectors are being developed by genetic modification of retroviruses adenoviruses poxviruses parvoviruses (adeno-associated viruses) herpesviruses and others
Gene Delivery Slide 21 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Replication These vectors are engineered by deleting the essential genes
which allow replication assembling or infection
But on the other hand vectors need to be produced in large amounts of virus particles
Specialized cell lines called ldquopackaging cell linesrdquo (PCLs) engineered to replace a function of a deleted viral gene Removed virus genes are inserted into the genome of the packaging cells and can be expressed there
The process by which the function of the deleted viral gene is supplied by a protein encoded in the PCL genome is called ldquocomplementationrdquo
Gene Delivery Slide 22 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vectors
Gene Delivery Slide 23 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Non-viral techniques of gene transfer represent a simple and more
importantly safer alternative to viral vectors
Because of their relatively simple quantitative production and low immunogenicity these vectors are attractive tools in gene therapy
Ongoing studies and the development of new vectors that show transfection efficiency just like that of viral vectors point towards their great potential
The main advantage is a virtually unlimited clone capacity low toxicity and immunogenicity of non-viral vectors and the ability of repeated application
Gene Delivery Slide 24 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Non-viral Gene Delivery
Viruses are naturally occurring being which are specialized for transfection
So they inherently can pass the barriers to gene delivery and transfer their genetic material into host
For non-viral delivery systems these abilities should be designed in the vector
Gene Delivery Slide 25 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-viral Gene Delivery Systems Non-viral gene delivery system can be categorized to
ndash Physical (carrier-free gene delivery)bull Naked DNAbull Direct Injectionbull Electroporationbull Gene-Gun
ndash Chemical (synthetic vector-based gene delivery)bull Lipoplex Vectorsbull Polyplexesbull Dendrimeric Vectorsbull Polypeptide Vectorsbull Inorganic Nanoparticles
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 21 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vector Replication These vectors are engineered by deleting the essential genes
which allow replication assembling or infection
But on the other hand vectors need to be produced in large amounts of virus particles
Specialized cell lines called ldquopackaging cell linesrdquo (PCLs) engineered to replace a function of a deleted viral gene Removed virus genes are inserted into the genome of the packaging cells and can be expressed there
The process by which the function of the deleted viral gene is supplied by a protein encoded in the PCL genome is called ldquocomplementationrdquo
Gene Delivery Slide 22 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vectors
Gene Delivery Slide 23 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Non-viral techniques of gene transfer represent a simple and more
importantly safer alternative to viral vectors
Because of their relatively simple quantitative production and low immunogenicity these vectors are attractive tools in gene therapy
Ongoing studies and the development of new vectors that show transfection efficiency just like that of viral vectors point towards their great potential
The main advantage is a virtually unlimited clone capacity low toxicity and immunogenicity of non-viral vectors and the ability of repeated application
Gene Delivery Slide 24 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Non-viral Gene Delivery
Viruses are naturally occurring being which are specialized for transfection
So they inherently can pass the barriers to gene delivery and transfer their genetic material into host
For non-viral delivery systems these abilities should be designed in the vector
Gene Delivery Slide 25 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-viral Gene Delivery Systems Non-viral gene delivery system can be categorized to
ndash Physical (carrier-free gene delivery)bull Naked DNAbull Direct Injectionbull Electroporationbull Gene-Gun
ndash Chemical (synthetic vector-based gene delivery)bull Lipoplex Vectorsbull Polyplexesbull Dendrimeric Vectorsbull Polypeptide Vectorsbull Inorganic Nanoparticles
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 22 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Viral Vectors
Gene Delivery Slide 23 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Non-viral techniques of gene transfer represent a simple and more
importantly safer alternative to viral vectors
Because of their relatively simple quantitative production and low immunogenicity these vectors are attractive tools in gene therapy
Ongoing studies and the development of new vectors that show transfection efficiency just like that of viral vectors point towards their great potential
The main advantage is a virtually unlimited clone capacity low toxicity and immunogenicity of non-viral vectors and the ability of repeated application
Gene Delivery Slide 24 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Non-viral Gene Delivery
Viruses are naturally occurring being which are specialized for transfection
So they inherently can pass the barriers to gene delivery and transfer their genetic material into host
For non-viral delivery systems these abilities should be designed in the vector
Gene Delivery Slide 25 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-viral Gene Delivery Systems Non-viral gene delivery system can be categorized to
ndash Physical (carrier-free gene delivery)bull Naked DNAbull Direct Injectionbull Electroporationbull Gene-Gun
ndash Chemical (synthetic vector-based gene delivery)bull Lipoplex Vectorsbull Polyplexesbull Dendrimeric Vectorsbull Polypeptide Vectorsbull Inorganic Nanoparticles
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 23 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Non-viral techniques of gene transfer represent a simple and more
importantly safer alternative to viral vectors
Because of their relatively simple quantitative production and low immunogenicity these vectors are attractive tools in gene therapy
Ongoing studies and the development of new vectors that show transfection efficiency just like that of viral vectors point towards their great potential
The main advantage is a virtually unlimited clone capacity low toxicity and immunogenicity of non-viral vectors and the ability of repeated application
Gene Delivery Slide 24 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Non-viral Gene Delivery
Viruses are naturally occurring being which are specialized for transfection
So they inherently can pass the barriers to gene delivery and transfer their genetic material into host
For non-viral delivery systems these abilities should be designed in the vector
Gene Delivery Slide 25 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-viral Gene Delivery Systems Non-viral gene delivery system can be categorized to
ndash Physical (carrier-free gene delivery)bull Naked DNAbull Direct Injectionbull Electroporationbull Gene-Gun
ndash Chemical (synthetic vector-based gene delivery)bull Lipoplex Vectorsbull Polyplexesbull Dendrimeric Vectorsbull Polypeptide Vectorsbull Inorganic Nanoparticles
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 24 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges to Non-viral Gene Delivery
Viruses are naturally occurring being which are specialized for transfection
So they inherently can pass the barriers to gene delivery and transfer their genetic material into host
For non-viral delivery systems these abilities should be designed in the vector
Gene Delivery Slide 25 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-viral Gene Delivery Systems Non-viral gene delivery system can be categorized to
ndash Physical (carrier-free gene delivery)bull Naked DNAbull Direct Injectionbull Electroporationbull Gene-Gun
ndash Chemical (synthetic vector-based gene delivery)bull Lipoplex Vectorsbull Polyplexesbull Dendrimeric Vectorsbull Polypeptide Vectorsbull Inorganic Nanoparticles
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 25 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-viral Gene Delivery Systems Non-viral gene delivery system can be categorized to
ndash Physical (carrier-free gene delivery)bull Naked DNAbull Direct Injectionbull Electroporationbull Gene-Gun
ndash Chemical (synthetic vector-based gene delivery)bull Lipoplex Vectorsbull Polyplexesbull Dendrimeric Vectorsbull Polypeptide Vectorsbull Inorganic Nanoparticles
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 26 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Non-Viral Delivery Systems Lipoplexes and Polyplexes
Synthetic vectors improving the admission of DNA into the cell and protecting it from undesirable degradation were created
The most used are derived from lipids or synthetic polymers
Plasmid DNA can be covered by lipids into organized structures such as liposomes or micelles This complex of DNA with lipids is called a lipoplex
Vectors based on a complex of polymers with DNA are called polyplexes
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 27 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
LipoplexesLipoplexes can be divided into two types
ndash Anionic and neutral liposomes are characterized by safety compatibility with body fluids and the possibility of tissue-specific gene transfer but the level of transduced cell expression is relatively low
ndash Cationic and Ionizable liposomes naturally create complexes with negatively charged DNA Their positive charge allows interactions with the negatively charged cell membrane
Targeted transfection can be gained to some extent by the addition of tissue-specific target ligand
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 28 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes
Most of Polyplexes consist of cationic polymers and their production is regulated by ionic interactions
In contrast to Lipoplexes some Polyplexes (poly lysin) are not able to release intracellular DNA into the cytoplasm
Polymers such as polyethylenimine have a mechanism of endosome disruption and there is thus no need for transfection with endosome-lytic agents
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 29 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL Polylysine has an exceptional capacity to condense DNA
At physiological pH all primary-amino groups of PLL are protonated yielding a structure with no buffering capacity to aid in endosomal escape
Polylysine structures with molecular weightsgt3000 Da can effectively condense DNA indicating the significance of primary amine number for complex formation
But these heavier PLLs exhibit relatively high cytotoxicity
This toxicity has been reduced with the incorporation of imidazole group into the PLL chain or through the use of dendritic PLLs
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 30 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Poly(L-Lysine) or PLL High MWt PLLDNA complexes also have a tendency to aggregate
and precipitate depending on the ionic strength of the solution
One method used to overcome the formation of insoluble precipitates is to form block copolymers of PLL with PEG
To overcome nonspecific cell targeting various research groups have derivatized PLL with targeting moieties
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 31 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polyethylenimine (PEI) Polyethylenimine is often considered the gold standard of gene
transfection
Polyethylenimine exists as both a branched and linear structure
The transfection efficiency of PEI is due at least in part to the ldquoproton spongerdquo nature of it
At a physiological pH approximately 80 of the amines remain unprotonated compared to less than 50 unprotonated nitrogens at a pH of 5
This buffering capacity allows PEI polyplexes to avoid lysosomal trafficking and degredation once inside the cell
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 32 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polyplexes Polymethacrylate Due to its inherent cationic charge poly[2-(dimethylamino)ethyl
methacrylate] (PDMAEMA) offers significance as a gene transfer agent
The successful in vitro transfection efficiency of PDMAEMA polyplexes is attributed to the ability of the polymer to destabilize endosomes as well as to dissociate easily from the plasmid once delivered into the cytosol
The mechanism of gene transfer for methacrylate polyplexes has been shown to proceed by both clathrin- and caveolae-dependent pathways
Caveolae-dependent uptake appears to be vital for effective gene transfer of PDMAEMA polyplex
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 33 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers β-cyclodextrins
To overcome the cytotoxicity incorporating β-cyclodextrin into cationic polymers has been studied
The length of the alkyl chain(n) between cyclodextrin monomer units affects polyplex cytotoxicity
ndash Cytotoxicity generally decreases with longer chain lengths (decreased charge density)
ndash With alkyl chain lengths (n) ranging from 4 to 10 cytotoxicity was lowestndash Transfection efficiency was highest with 6 7 or 8 methylene units ndash The high toxicitylow transfection efficiency of the polymer with 10 methylene
units was attributed to lower solubility
Like most other cationic vector systems in vivo use of β-cyclodextrin is hindered by aggregation at high ionic strengths While PEGylation can generally reduce the formation of aggregates
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 34 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
The biodegradability biocompatibility and cationic potential of chitosan has helped it become one of the most prominent naturally derived nonviral vectors for gene transfer
Chitosan is produced by deacetylation of chitin to form a polymer composed of D-glucosamine and N-acetyl D-glucosamine subunits linked by β(14) glycosidic bonds
Molecular weight of chitosan polymers can strongly influence gene transfer efficiency
Regardless of the increased polyplex size high molecular weight chitosan forms more stable complexes with DNA due to a chain entanglement effect
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 35 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Carbohydrate Based Polymers Chitosan
In addition to molecular weight several other factors have been shown to affect the transfection efficiency of chitosan polyplexes including the NP ratio pH and the degree of deacetylation
Optimal transfection efficiency of chitosan polyplexes can be achieved between pH 68 and 70
Above pH 75 DNA was shown to dissociate from the complex
Below pH 65 cellular uptake was significant but transfection efficiency was low possibly due to hindered endosomal release
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 36 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Dendrimer Based Vectors PAMAM Polyamidoamine Dendrimers (PAMAM)
ndash Due to ease of synthesis and commercial availability they have become the most utilized dendrimer-based vectors for gene transfer
ndash High generation PAMAM dendrimers (G5-G7) induce lipid mixing and leakage from phospholipid vesicles Which was attributed to the ability of the spherical PAMAM structure to bend the anionic membrane through electrostatic forces and induce packing stresses leading to lipid mixing
ndash Following cellular uptake endosomal chloride accumulation increased significantly and the pH also increased indicating the occurrence of endosomal swellinglysis (proton sponge effect)
ndash Various alterations to the basic PAMAM dendrimer structure have been investigated in an effort to improve transfection efficiency or PAMAMDNA complex formation
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 37 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Peptide-oligonucleotide conjugates offer a strategy of delivering
genetic material into cells with high efficiencies and cell-specificity
These amino acid sequences called cell-penetrating peptides(CPPs)
are generally divided into two classesndash lysine-rich peptides such as the amphipathic MPG peptide and transportanndash arginine-rich peptides such as the homeodomain of antennapedia (Antp) and
trans-activating transcriptional activators (TAT)
Generally the peptide is covalently linked to the oligonucleotide construct rather than complexed via electrostatic interactions (Complexation of peptides and siRNA can be either electrostatic or covalent)
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 38 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors TAT-Based Peptides
TAT protein is an 86-102 amino acid sequence organized into three domains
ndash cationic regions involved in controlling the rate of gene expressionndash cysteine-rich regions involved in DNA binding andndash basic amino acid regions involved in promoting the crossing of the membrane
The cellular uptake of free Tat-peptides has been shown to proceed by an energy-independent pathway but the transfection of Tat-DNA complexes may proceeds by endocytosis
As an example By covalently attaching the Tat-peptide with anti-MDR antisense oligonucleotide it was shown that in vitro P-glycoprotein expression could be significantly inhibited
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 39 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors Antennapedia Homeodomain Peptide
Antennapedia homeodomain is a 60-amino acid polypeptide corresponding to the Drosophilia melanogaster antennapedia homeobox sequence
While the third alpha-helix of the pAntp is involved in promoting translocation the 60-amino acid structure could be reduced to a 16-mer peptide
Cellular uptake of pAntp proceeds by a nonendocytic pathway(Even at 4ordmC)
The replacement of several amino acids with proline disrupted the alpha-helical structure of pAntp but did not hinder cellular uptake suggesting that the alpha-helical conformation is not required
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 40 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polypeptide Vectors MPG peptide
The MPG peptide is a synthetic compound containing a hydrophobic N-terminal region derived from the fusion sequence of HIV and a hydrophilic region derived from the NLS of the SV40 large T antigen
Complexation of MPG with oligonucleotides proceeds via electrostatic interaction between the basic residues of the NLS region and the phosphonate backbone of the oligonucleotide
When MPG peptide is complexed with oligonucleotides the hydrophobic region partially folds into a β-sheet structure which promotes cellular uptake by inserting into the plasma membrane and forming a transmembrane pore-like structure
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 41 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Mechanisms of membrane translocation
Theories of CPP translocation can be classified into three main entry mechanisms
Direct penetration in the membranendash Most likely involved a direct electrostatic interaction with negatively
charged phospholipids ndash interactions between cell-penetrating peptides and the phosphate groups on both
sides of the lipid bilayer the insertion of charged side-chains that nucleate the formation of a transient pore followed by the translocation of cell-penetrating peptides by diffusing on the pore surface
Endocytosis-mediated entry
Formation of a transitory structurendash Formation of the inverted micellesndash Transmembrane structures
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 42 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Inorganic Nanoparticles
The application of inorganic nanoparticles in gene delivery is an emerging field too because they can be prepared and surface-functionalized in many different ways Examples of such systems are
ndash Metallic nanoparticles (Gold nanoparticles are inert and are easily functionalized)
ndash Iron oxide (superparamagnetic cytotoxic used in polymer-coated form)
ndash calcium phosphate magnesium phosphate manganese phosphate
ndash carbon nanotubes (are surface functionalized and used)
ndash quantum dots (employed for tracking of delivery systems)
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 43 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Iron Oxide Nanoparticles Iron oxide nanoparticles (IONPs) superparamagnetic material
sized between approximately 1 and 100 nm have a long history of investigation
In order to produce IONPs that are highly efficient for gene delivery the IONPs should have an enhanced cationic surface with cationic polymers such as PEI PLL and chitosan
PEI-IONPs are limited for in vivo applications due to cellular toxicity
In order to overcome cellular toxicity various polymers have been utilized to coat or conjugate to the IONPs (PEG for example)
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 44 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Carbon nanotubes Carbon nanotubes can be used as a GDS when they are
chemically modified
They can be either covalently functionalized by oxidation and subsequent 1 3-dipolar cyclo-addition reaction or non-covalently functionalized with hydrophobic or π-π stacking between the CNT and another non-polar ring such as the backbone of DNA
In vitro and in vivo studies have suggested that PEG-modified CNTs have favorable pharmacokinetic and toxicology profiles
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 45 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Silica nanoparticles Silica nanoparticles (SiNPs) have been used as drug and gene
delivery agents because they can be easily modified
SiNPs need to be modified with an anchoring group and charge transfer functional group to allow for DNA binding by electrostatic interactions for efficient cellular delivery
The regular arrangement of pores or hollow cavities in the silica nanoparticles easily accommodates siRNA molecules
Silica materials are usually toxic but their toxicity may be reduced through surface modifications For example surface-coating with PEI makes positively charged SiNPs which can pass through the cell membrane more easily and have significantly reduced toxicity
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 46 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Gold nanoparticles (AuNPs) consist of colloidal gold suspended in
liquids sized from 1 to 150 nm
Gold nanoparticles have emerged as an attractive and widely used nanomaterial for GDSs because they are inert and essentially nontoxic to cells
Furthermore AuNPs can be easily functionalized by anchoring thiol linkers Conjugate materials used for facilitating cellular uptake include peptides proteins antibodies oligosaccharides and nucleic acids
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 47 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Nanoparticles Gold nanoparticles Antisense oligodeoxynucleotide (ASODN)-modified gold
nanoparticles have higher affinity for complementary nucleic acids than their unmodified oligonucleotide counterparts
Furthermore AuNP-ASODNs are less susceptible to degradation by nuclease activity exhibit greater than 99 cellular uptake and are less toxic to the cells under the studied conditions
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 48 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS Non-viral GDSs lack mechanisms for integration into the host
chromosome
So the expression of delivered genes will be transient because it gradually becomes inactivated
One the inactivation mechanisms is so-called ldquogene dilutionrdquo This process takes place mainly in dividing cells with a plasmid vector that is not integrated and the number of copies of extrachromosomal DNA reduces with each cell cycle
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 49 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Challenges in Non-viral GDS For this reason combination of DNA transposon-based vectors is
required for gene delivery
A transposon is a DNA sequence that can change its position within the genome through a direct cut-and-paste mechanism
A simple transposon is organized by terminal inverted repeats embracing a gene encoding transposase an enzyme required for its transposition
Engineered DNA transposons have the desired features of naked DNA and plasmidsas well as the ability to insert transgenes into host chromosomes for long-term transgene expression
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 50 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Transposition
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 51 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNA interference (RNAi) gained international attention in 1998
when Fire Mello and colleagues discovered the ability of double-stranded RNA to silence gene expression in the nematode worm Caenorhabditis elegans
Three years later Tuschl et al published their experiment demonstrating that synthetic siRNA could achieve sequence-specific gene knockdown in a mammalian cell line
The first successful use of siRNA for gene silencing in mice was achieved for a hepatitis C target shortly thereafter
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 52 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference There are numerous classes of small non-coding RNA in eu Cells
involved in RNA splicing editing and modification (catalytic RNAs)
Very small RNAs or micro RNAs (miRNA) are gen expression regulators found in most eu cells
Human genome hast an estimated 1000 genes that code for miRNAs that participate in RNA interference(RNAi) (half from coding genes and half from ncRNAs or even pseudogenes)
This is a general mechanism to repress gene expression usually but not always at the translation level
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 53 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference These miRNAs go by a number of names and are sometimes
called short temporal RNAs (stRNA) because of their role in development
Piwi-associated RNAs(piRNA) are found in germ cells
Small interfering RNAs(siRNA) are typically produced during a viral infection
Both can be used to control the expression of transposable elements
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 54 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 55 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 56 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference RNAi is triggered by the presence of long pieces of double-stranded
RNA which are cleaved into the fragments known as siRNA (21ndash23 nucleotides long) by the enzyme Dicer
In practice siRNA can be synthetically produced and then directly introduced into the cell thus circumventing Dicer mechanics
Once siRNA is present in the cytoplasm of the cell it is incorporated into a protein complex called the RNA induced silencing complex(RISC) composed of argonauts(ago) protein family
RISC has endonuclease activity that cleaves the passenger strand the one which will not be used in the duplex siRNA or miRNA
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 58 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The degree of base pairing and the sequence of the ends
The RISC complex is now in a position to use the mature siRNA to guide it to its target mRNA
siRNA searches mRNAs for small regions of homology usually found in AU-reach region in 3rsquo-UTR
Two primary mechanisms used to control mRNA expression ndash Degredation of the mRNA (common in plant cells)ndash Inhibition of translation (common in animals)
The choice is primarily determined by the degree of base-pairing between the siRNA and mRNA The higher base paring the more likely that the target mRNA will be degraded
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 60 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
RNA Interference The activated RISC complex can destroy additional mRNA
targets which further propagates gene silencing This extra potency ensures a therapeutic effect for 3ndash7 days in rapidly dividing cells and for several weeks in non-dividing cells
Theoretically when using appropriately designed siRNA the RNAi machinery can be exploited to silence nearly any gene in the body giving it a broader therapeutic potential than typical small-molecule drugs
In order for these advances to be implemented in a clinical setting safe and effective delivery systems must be developed
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 61 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems Naked chemically modified siRNA has shown efficacy in certain
physiological settings such as the brain and the lung
But most tissues in the body require an additional delivery system to facilitate transfection(enzymes large size(~13 kDa) too negatively charged)
The issue of effective and non-toxic delivery is a key challenge and serves as the most significant barrier between siRNA technology and its therapeutic application
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 62 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Delivery Systems localized siRNA delivery
ndash Application of siRNA therapy directly to the target tissuendash Several tissues are amenable to topical or localized therapy
including the eye skin mucus membranes and local tumorsndash well-suited for the treatment of lung diseases and infections
The direct instillation of siRNA into the lung through intranasal or intratracheal routes
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 63 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
siRNA Modification Chemical modifications can be introduced
into the siRNA molecule to evade immune defense and nucleases in vivo
Incorporation of 2prime-O-methyl or 2prime-Fluoro or 2-methoxyethyl modifications into the sugar structure of selected nucleotides within both the sense and antisense strands
Replacement of the phosphodiester(PO4)group with phosphothioate(PS) at the 3-end
The locked nucleic acid substitution containing a methylene linkage between the 2- and 4-positions
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 64 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Polymer Vectors siRNA differs from pDNA in Mwt charge ratio stability and action
However both are nucleic acids
Polymer-mediated DNA delivery systems would provide a lot of knowledge for the development of polymer-based siRNAs
Cationic polymers usually form a complex with negatively charged siRNA upon simple mixing
Categoriesndash Synthetic PEI PLL cyclodextrin-based polycationsndash Natural Chitosan atelocollagen and polypeptides
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 65 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors Cyclodextrin polymers are polycationic oligomers (n asymp 5)
synthesized by a step-growth polymerization between diamine-bearing cyclodextrin monomers and dimethyl suberimidate yielding oligomers with amidine functional groups
The strong basicity of these amidine groups mediates efficient condensation of nucleic acids
End-capping of the polymer termini with imidazole functional group can aid endosomal escape
Both adamantanendashPEG (ADndashPEG) and adamantanendashPEGndashtransferrin (ADndashPEGndashTf) were incorporated to improve particle properties
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 66 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 67 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cyclodextrin Polymer Vectors
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 68 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Liposomes studied as delivery vectors for DNA-based drugs
because of their ability both to protect entrapped oligonucleotides from nucleases and renal clearance and to promote cellular uptake and endosomal escape
Cationic and ionizable lipidsndash Improve the entrapment of the negatively charged siRNA increase cellular
uptake and aid endosomal escapendash Several studies have determined that cationic lipids are less efficacious and
more toxic than ionizable lipids whose charge is dependent on the pHndash Thus recent work has focused on the development of new ionizable lipids ndash The composition of these lipids is generally divided into three parts
an amine head group a linker group and hydrophobic tails
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 69 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids To minimize toxicity without sacrificing efficacy the pKa of an
ionizable lipid should be low enough for it to remain unprotonated during circulation but high enough for it to become protonated in either the early or late endosome (54-76)
Lipid transition temperature refers to the temperature at which lipid membranes shift from the more stable lamellar phase to the less stable hexagonal phase
This transition promotes destabilization of the endosomal membrane and release of siRNA
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 70 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Ionizable Lipids Lipids with lower transition
temperatures which more readily shift from lamellar to hexagonal to promote endosomal release have small polar head groups and large unsaturated hydrophobic tails Lipids with large polar head groups and fully saturated hydrophobic tails are more likely to adopt the stable lamellar phase Successful lipid formulations are engineered to remain in the lamellar phase during circulation and to transition to the hexagonal phase within endosomal compartments
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 71 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding lipids Lipid-anchored PEG is a common component in liposomes PEG groups serve many purposes they prevent aggregation
increase circulation time and reduce uptake by unintended targets such as RBCs and macrophages
Shielding lipids can reduce cellular uptake and efficacy After endocytosis PEG can sterically and electrostatically block the
interaction between the liposome and the endosomal membrane hindering membrane fusion and preventing endosomal release
One strategy for improving the efficacy of PEGylated nanoparticles involves incorporation of acid-sensitive bonds connecting PEG to the liposome
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 72 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Shielding Lipids Another method to reduce the negative effects of shielding involves
the use of a pH-sensitive modified PEG that binds to liposomes through ionic interactions
The liposomal core consists of 12-dioleoyl-sn-glycero-3-phosphatidylethanolamine (DOPE) as well as 2-hydroxyethyl methacrylate(HEMA)ndashlysine-modified cholesterol
PEG is covalently modified with HEMAndashhistidinendashmethacrylic acid
At neutral pH the PEG copolymer has a net negative charge whereas the liposomal core has a net positive charge In the endosome imidazole and methacrylic acid residues become protonated and the net charge of the PEG becomes positive
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 73 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Cholesterol Many liposomal formulations include cholesterol which can
associate with lipid bilayers Increase in the cholesterol content lowers the transition temperature
of liposomal membranes containing conical-shaped lipids
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 74 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors Targeting ligands
To improve the biodistribution of liposomes many formulations use endogenous or exogenous targeting ligands
ndash Endogenous targeting ligand often a serum protein binds to the liposome during circulation and directs it to the ligandrsquos natural target
bull The lipoprotein ApoE has been used as an endogenous targeting ligand by DLinndashKC2ndashDMA-based ionizable liposomes
bull Retinol binding protein (RBP) is also used an endogenous targeting ligand This serum protein binds vitamin A and transports it to cells expressing the RBP receptor including hepatic stellate and pancreatic stellate cells
ndash Exogenous targeting ligands are added to liposomal formulations before injection to bind desired surface proteins on target cells
bull folate which has been used to target delivery to rapidly dividing cancer cells is an example of exogenous ligands
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 75 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Lipid Vectors SNALPs For in vivo siRNA delivery stable nucleic acidndashlipid particles
(SNALPs) have been formulated
A SNALP consists of a lipid bilayer containing a mixture of cationic and fusogenic lipids that enables the cellular uptake and endosomal release of siRNA
The surfaces of SNALPs were coated with a polyethylene glycolndashlipid conjugate that provides a neutral hydrophilic exterior and stabilizes the particle during formulation
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 76 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate delivery systemsDirectly conjugating delivery material to the siRNA cargo
The first conjugate delivery systems to show efficacy in vivo consisted of siRNA conjugated to cholesterol and other lipophilic molecules
Other conjugate delivery systems have been developed by attaching siRNA to polymers peptides antibodies aptamers and small molecules
ndash Dynamic PolyConjugatesndash GalNAcndashsiRNA
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 77 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
siRNAndashpolymer conjugate delivery systems designed to respond to intracellular environments
The siRNA cargo is attached to a membrane-disrupting polymer by a hydrolysable disulphide linker cleaved in the reducing environment of the cytosol releasing the siRNA from the delivery polymer
The activity of the polymer is masked by PEG side chains while the system is in circulation The PEG is designed to be shed in the acidic environment inside the endosome
To induce uptake by target cells through receptor-mediated endocytosis ligands are incorporated GalNAc ligands which bind to the asialoglycoprotein receptor (ASGPR) on hepatocytes
the siRNA itself is chemically modified to improve nuclease stability and to reduce off-target effects
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 78 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Dynamic Polyconjugates
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 79 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
In this system the 3ʹ terminus of the siRNA sense strand is attached to three GalNAc molecules by means of a triantennary spacer
Multivalency of the sugar ligand greatly improves cell uptake and spacing of the sugar moieties also plays a role In a study of triantennary galactose ligands binding affinity increased with spacer length over a range of 4ndash20 Aring
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 80 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors The construction of three-dimensional nanoparticles of defined
composition from nucleic acids has generated interest ndash Molecularly identical nanoparticles with strictly defined characteristics
Oligonucleotide nanoparticles (ONPs) were composed of complementary DNA fragments designed to hybridize into predefined three-dimensional structures
constructing DNA tetrahedra was adapted by incorporating single-stranded overhangs on each edge
Short interfering RNAs were modified by extension of the 3ʹ sense strands with DNA overhangs
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 81 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 82 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Oligonucleotide Vectors Oligonucleotide nanoparticles modified with folate ligands were
used to study the minimum number of targeting ligands required
These questions are difficult or impossible to address using many other nanoparticle systems
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 83 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Worldwide between 100 and 350 of each 100000 people die of cancer
each year
Genetic control systems regulate the balance between cell birth and death in response to growth signals growth-inhibiting signals and death signals
The losses of cellular regulation that give rise to most or all cases of cancer are due to genetic damage
Mutations in two broad classes of genes have been implicated in the onset of cancer proto-oncogenes and tumorsuppressor genes
Many of the genes in both classes encode proteins that help regulate cell birth (entry into and progression through the cell cycle) or cell death by apoptosis others encode proteins that participate in repairing damaged DNA
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 84 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cancer Seven types of proteins that
participate in controlling cell growth and proliferation
ndash Extracellular signaling molecules (I) ndash Signal receptors (II) ndash Signal-transduction proteins (III)ndash Transcription factors (IV) ndash Apoptotic proteins (V)ndash Cell cycle control proteins (VI)ndash DNA-repair proteins (VII)
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 85 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 86 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Can be categorized to Passive Targeting and Active Targeting
Passive Targeting
Enhanced Permeability and Retention (EPR) effectndash For most tumors nanoparticles with a mean size around 100 nm are
attractive for tumor targetingndash Particles larger than 400 nm can not easily enter the capillary gaps in the
tumor vasculature whereas particles smaller than 70 nm are able to access the parenchymal cells in the liver
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 87 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Tumor Targeting Active Targeting
Grafting markers or ligands at the surface of the delivery system for receptors only expressed or at least overexpressed in tumors
Tumor homing peptides are able to react with different receptorsndash Integrin receptors with RGD peptide (ArgeGlyeAsp)
Alpha V integrin proteins overexpressed on tumoral vesselsndash AsneGlyeArg (NGR) motif interact with aminopeptidase N receptor (CD13) The expression of this receptor was correlated with cancerous angiogenic
property and cell mobilityndash Unsaturated fatty acids folic or hyaluronic acids Antibodies etc
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 88 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer TherapyCell Cycle Cell cycle progression is strictly controlled by numerous effectors
and checkpoints
Main effectors of cell cycle progression are cyclins and cyclin-dependant kinases (cdk)
Cyclins form the regulatory subunits and CDKs the catalytic subunits of an activated heterodimer
When activated by a bound cyclin CDKs performs phosphorylation that activates or inactivates target proteins to orchestrate coordinated entry into the next phase of the cell cycle
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 89 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Cell Cycle Control
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 90 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy cyclin B1cdk1 complex is the main effector implicated in G2M transition
Numerous studies have proven the overexpression of cyclin B1 in various cancers as oesophageal squamous cancer non-small lung cancer renal cancer prostate adenocarcinoma and breast cancer
Cyclin B1 siRNA inhibition strategy was employed in prostate and lung cancer in vivo with peptide-based delivery systems
Polo-like-kinase1(Plk1) plays key roles during mitosis notably in the activation of cyclin B1cdk1 complex
Plk1 is overexpressed in multiple cancer types including melanoma nonsmall cell lung cancer colorectal cancer and breast cancer
Plk1 siRNA delivery systems are being studied
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 91 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Proliferation pathways
Cancer cells are characterized by sustained proliferation resulting from increased proliferative signals decrease of negative feed-back signals and replicative immortality acquisition
Cancer cells may produce or force their environment to produce excessive growth factors like insulin growth factor (IGF) or epidermal growth factor (EGF)
Such external stimuli activate intracellular cascades like the MAPK pathways or the phosphoinositide-3-kinase (PI3K)serinethreonin kinase AKT one that promotes proliferation division and survival and were clearly described in cancerogenesis mechanism
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 92 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Targets of siRNA in Cancer Therapy Cell death and survival Pathways involved in cell death and survival have important role in
cancer development
Cancer cells display acquired or innate cell death resistance mechanisms (to apoptosis or other cell death pathways)
Angiogenesis Without angiogenesis cancer could not grow up to more than 2 mm of
diameter
Vascular endothelium growth factors(VEGFs and VEGFA in particular) are the most described secreted molecules implicated in angiogenesis of human cancers
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Apoptotic Pathways
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 94 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 95 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Some of Main References
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 96 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 97 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 98 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Gene Delivery Slide 99 of 100 December 2013
Tehran University of Medical SciencesSchool of Pharmacy
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-
Thank Youfor Your Kind Attention
- Slide 1
- Definitions
- Gene Therapy Approaches
- Barriers to Gene Delivery
- Challenges to Gene Delivery Off-target Effect
- Challenges to Gene Delivery Immune stimulation
- Challenges to Gene Delivery Serum inactivation and enzyme degr
- Challenges to Gene Delivery RES Recognition
- Challenges to Gene Delivery Entrance Into Cells
- Challenges to Gene Delivery Entrance Into Cells (2)
- Challenges to Gene Delivery Endosome Escape
- Challenges to Gene Delivery Endosome Escape (2)
- Challenges to Gene Delivery Nuclear Entry
- Nuclear Pore Complex
- Nuclear Pore Complex (2)
- Challenges to Gene Delivery Nuclear Entry (2)
- Gene Delivery Systems
- Vectors
- Categorization
- Viral Vector Delivery Systems
- Viral Vector Replication
- Viral Vectors
- Non-Viral Delivery Systems
- Challenges to Non-viral Gene Delivery
- Non-viral Gene Delivery Systems
- Non-Viral Delivery Systems Lipoplexes and Polyplexes
- Lipoplexes
- Polyplexes
- Polyplexes Poly(L-Lysine) or PLL
- Polyplexes Poly(L-Lysine) or PLL (2)
- Polyplexes Polyethylenimine (PEI)
- Polyplexes Polymethacrylate
- Carbohydrate Based Polymers β-cyclodextrins
- Carbohydrate Based Polymers Chitosan
- Carbohydrate Based Polymers Chitosan (2)
- Dendrimer Based Vectors PAMAM
- Polypeptide Vectors
- Polypeptide Vectors TAT-Based Peptides
- Polypeptide Vectors Antennapedia Homeodomain Peptide
- Polypeptide Vectors MPG peptide
- Mechanisms of membrane translocation
- Inorganic Nanoparticles
- Nanoparticles Iron Oxide Nanoparticles
- Nanoparticles Carbon nanotubes
- Nanoparticles Silica nanoparticles
- Nanoparticles Gold nanoparticles
- Nanoparticles Gold nanoparticles (2)
- Challenges in Non-viral GDS
- Challenges in Non-viral GDS (2)
- Transposition
- RNA Interference
- RNA Interference (2)
- RNA Interference (3)
- RNA Interference (4)
- Slide 55
- RNA Interference (5)
- Slide 57
- RNA Interference (6)
- Slide 59
- RNA Interference (7)
- Delivery Systems
- Delivery Systems (2)
- siRNA Modification
- Polymer Vectors
- Cyclodextrin Polymer Vectors
- Cyclodextrin Polymer Vectors (2)
- Cyclodextrin Polymer Vectors (3)
- Lipid Vectors
- Lipid Vectors Ionizable Lipids
- Lipid Vectors Ionizable Lipids (2)
- Lipid Vectors (2)
- Lipid Vectors Shielding Lipids
- Lipid Vectors (3)
- Lipid Vectors (4)
- Lipid Vectors SNALPs
- Conjugate delivery systems
- Conjugate Delivery Systems Dynamic Polyconjugates
- Conjugate Delivery Systems Dynamic Polyconjugates (2)
- Conjugate Delivery Systems Triantennary GalNAcndashsiRNA
- Oligonucleotide Vectors
- Oligonucleotide Vectors (2)
- Oligonucleotide Vectors (3)
- Cancer
- Cancer (2)
- Slide 85
- Tumor Targeting
- Tumor Targeting (2)
- Targets of siRNA in Cancer Therapy
- Cell Cycle Control
- Targets of siRNA in Cancer Therapy (2)
- Targets of siRNA in Cancer Therapy (3)
- Targets of siRNA in Cancer Therapy (4)
- Slide 93
- Some of Main References
- Some of Main References (2)
- Slide 96
- Slide 97
- Slide 98
- Slide 99
- Slide 100
-