sol meeting 2015 sgn workshop introduction
TRANSCRIPT
Sol Genomics Network
SGN Workshop
Lukas A. MuellerBoyce Thompson Institute for Plant Research
SOL Meeting 2015
Sol Genomics Network
Overview
• Introduction (Lukas) • Tools (VIGS, BLAST, JBrowse, WebApollo -
Noe) • Tomato Genome Update (Surya) • Use Cases (Suzy)
Sol Genomics Network
New web design
Old design
Sol Genomics Network
New responsive design
Sol Genomics Network
The SGN carousel
linked to the genome paper
Direct access to JBrowse, BLAST, and the genome data
More visibility for news, events and
biological data
Sol Genomics Network
The SGN carousel
Sol Genomics Network
The SGN carousel
Sol Genomics Network
The SGN carousel
Sol Genomics Network
The SGN carousel
Send us pictures to add in
solgenomics.net
Sol Genomics Network
Same navigation
Navigation bar always visible on top
Expandable search box
Sol Genomics Network
Same navigation
Navigation bar always visible on top
Expandable search box
Sol Genomics Network
Same navigation
Navigation bar always visible on top
Expandable search box
Sol Genomics Network
Same navigation
Navigation bar always visible on top
Expandable search box
Sol Genomics Network
Maps
Sol Genomics Network
New Maps
• Eggplant-RAD 2012 • Solanum melongena 305E40 x Solanum
melongena 67/3 • Pepper-FA07
• Capsicum annuum cv. NuMex RNaky (FA07) x Capsicum frutescens var. BG 2814-6
Sol Genomics Network
Maps
Sol Genomics Network
Solanum Genomes
Solanum tuberosum
Solanum melongena
Solanum pennelliiSolanum lycopersicum
Solanum pimpinellifolium
Draft Genome
Draft Genome
Sol Genomics Network
Nicotiana Genomes
Nicotiana sylvestris &
Nicotiana tomentosiformis
Draft Genome
Nicotiana benthamiana
Draft Genome
Nicotiana tabacum
Draft Genome
N. tabacum K326 (Flue-cured)N. tabacum TN90 (Burley)
N. tabacum Basma Xanthi (BX, Oriental)
Sol Genomics Network
Other Genomes
Capsicum annuum
Capsicum annuum Zunla-1Capsicum annuum var. glabriusculum
Capsicum annuum cv. CM334Capsicum chinense
Coffea canephora
Petunia spp.Coming soon …
Sol Genomics Network
Biochemical Pathway Databases for Solanaceae
Sol Genomics Network
Breeder Toolbox
Breeders Toolbox
Tools
Sol Genomics Network
Breeders Toolbox Home
Sol Genomics Network
Sol Genomics Network
Sol Genomics Network
Phenotyping: Direct interface to Android Fieldbook
Sol Genomics Network
Trial details
Sol Genomics Network
Genomic Selection Tool