spatial pattern analyses across africa for a better ... · pdf file"biodiversity of...

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Wegmann, M., Magidi, J., Lung, T., Schaab, G., Krug, C., Knight R., Wegmann, M., Magidi, J., Lung, T., Schaab, G., Krug, C., Knight R., Sommer, J. H., Sabellek, K., Fahr, J., Herkt, M., Barnikel, G., Penner, J., Sommer, J. H., Sabellek, K., Fahr, J., Herkt, M., Barnikel, G., Penner, J., Rödel, M.-O., Keil, M., Landmann, T., Schmidt, M. Rödel, M.-O., Keil, M., Landmann, T., Schmidt, M. Spatial pattern analyses across Africa for a Spatial pattern analyses across Africa for a better understanding of biodiversity patterns better understanding of biodiversity patterns using remote sensing using remote sensing "Biodiversity of Africa - Observation and Sustainable Management for our Future!" International Congress, 29 September – 3 October 2008, at Spier, RSA

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Page 1: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

Wegmann, M., Magidi, J., Lung, T., Schaab, G., Krug, C., Knight R., Wegmann, M., Magidi, J., Lung, T., Schaab, G., Krug, C., Knight R., Sommer, J. H., Sabellek, K., Fahr, J., Herkt, M., Barnikel, G., Penner, J., Sommer, J. H., Sabellek, K., Fahr, J., Herkt, M., Barnikel, G., Penner, J., Rödel, M.-O., Keil, M., Landmann, T., Schmidt, M.Rödel, M.-O., Keil, M., Landmann, T., Schmidt, M.

Spatial pattern analyses across Africa for aSpatial pattern analyses across Africa for a

better understanding of biodiversity patterns better understanding of biodiversity patterns

using remote sensingusing remote sensing

"Biodiversity of Africa - Observation and Sustainable Management for our Future!" International Congress, 29 September – 3 October 2008, at Spier, RSA

Page 2: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

Remote Sensing data• temporal as well as spatial resolution improved, therefore:

• improved discrimination of landcover through phenology (e.g. MODIS)

• improved mapping of land cover change

NDVI time-series

Page 3: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

Remote Sensing data

land cover maps distribution of habitats

land cover change maps dynamics of habitats for species

…but spatial attributes of the fragments provide further relevant ecological information on suitability of potential habitats

GMES, SEBI

• temporal as well as spatial resolution improved, therefore:

• improved discrimination of landcover through phenology (e.g. MODIS)

• improved mapping of land cover change

NDVI time-series

Page 4: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

Spatial attributes

same area of landcover but different spatial arrangement

Page 5: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

fragments might be inappropriate for a species:

Spatial attributes

same area of landcover but different spatial arrangement

Page 6: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

Spatial attributes

same area of landcover but different spatial arrangement

• too small

fragments might be inappropriate for a species:

Page 7: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

Spatial attributes

same area of landcover but different spatial arrangement

• too small

• complex shape

fragments might be inappropriate for a species:

Page 8: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

Spatial attributes

same area of landcover but different spatial arrangement

• too small

• complex shape

• too isolated

spatial attributes are important for land management and conservation planning

fragments might be inappropriate for a species:

Page 9: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

talk 3.3

Ecosystems need a minimum of spatial integrity to deliver their services:

- fragmentation results in e.g. smaller patch areas (e.g. edge effects) and decreased connectivity

altered species distribution & species communities

- spatial pattern analysis is essential for species distribution models and resulting suggestions for protected area networks

Importance of spatial composition

talk 1.4

Page 10: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

Potential forest distribution using a spatial prediction modelling approach with e.g. precipitation, temperature, soil and elevation data

Maxent 3.0.1, 18 variables, n=1000

Fragmentation of pristine areas

Page 11: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

Actual rainforest cover (MODIS, 2001-2006)> 80% loss in rainforest cover; highly fragmented

Classification tree, MOD09 1000m, 2001-2006

Fragmentation of pristine areas

Page 12: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

1913194819842003

Aerial photography, Landsat MSS, (E)TM

talk 2.3

Fragmentation of pristine areasKakamega-Nandi Forests

60% loss in natural forest cover since 1913

forest fragmentation

Page 13: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

Sandveld (1990-2007) Sand Fynbos and Strandveld

fragmentation

Landsat MSS, (E)TM199020042007

poster

Fragmentation of pristine areas

Page 14: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

Analysis of spatial patternsFragmentation of pristine areas

Patches: smaller, complex shapes, reduced connectivity

Page 15: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

Analysis of spatial patternsFragmentation of pristine areas

Patches: smaller, complex shapes, reduced connectivity

How to analyse spatial patterns with respect to ecological relevance?

Page 16: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

Analysis of spatial patternsFragmentation of pristine areas

Patches: smaller, complex shapes, reduced connectivity

single patch: e.g. area, SHAPE

indices

Page 17: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

Analysis of spatial patternsFragmentation of pristine areas

Patches: smaller, complex shapes, reduced connectivity

single patch: e.g. area, SHAPE

patch connectivity: e.g. distance between patches

indices

Page 18: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

Various software packages serve the purpose to analyse spatial patterns (e.g. Fragstats)

semi-automatic processing implemented in a GIS potential to modify/implement algorithms

In-house software development for spatial analysis

Page 19: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

r.pi (raster patch index)

- basic analysis (SHAPE, asymmetry, fractal-Index)- Connectivity analysis

- k-ENN (Euklidean Nearest Neighbours)- Omnidirectional Connectivity

In-house software development for spatial analysis

Various software packages serve the purpose to analyse spatial patterns (e.g. Fragstats)

semi-automatic processing implemented in a GIS potential to modify/implement algorithms

Page 20: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

In-house software development for spatial analysis

r.pi (raster patch index)

- basic analysis (SHAPE, asymmetry, fractal-Index)- Connectivity analysis

- k-ENN (Euklidean Nearest Neighbours)- Omnidirectional Connectivity

Considering the environmental attributes:- k-FNN (Functional/ecological NN)- individual-based metrics

- (Im-)Migration- Searchtime

Various software packages serve the purpose to analyse spatial patterns (e.g. Fragstats)

semi-automatic processing implemented in a GIS potential to modify/implement algorithms

Page 21: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

In-house software development for spatial analysis

Various software packages serve the purpose to analyse spatial patterns (e.g. Fragstats)

semi-automatic processing implemented in a GIS potential to modify/implement algorithms

r.pi (raster patch index)

- basic analysis (SHAPE, asymmetry, fractal-Index)- Connectivity analysis

- k-ENN (Euklidean Nearest Neighbours)- Omnidirectional Connectivity

Considering the environmental attributes:- k-FNN (Functional/ecological NN)- individual-based metrics

- (Im-)Migration- Searchtime

Page 22: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

A

B

C

Influenced by:

- perception range

- attractiveness of patches

Connectivity: Searchtime

Page 23: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

Connectivity: Searchtime

A

B

C

Influenced by:

- perception range

- attractiveness of patches

A

B

C

additionally:

- …

- env. suitability

- env. costs

Page 24: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

Connectivity: Searchtime

average Searchtime, individuals/patch=10000

Page 25: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

Iterative removal of patch x and assign differences of searchtime of all other patches.

Patch contribution to connectivity

Page 26: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

Differences in searchtime after removal of patch B

A

B

C

Searchtime

- with all patches in the landscape

A

B

C

Diff. in searchtime

- each patch iteratively removed from the landscape

Patch contribution to connectivity

Page 27: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

small agglomerated rainforest remnants in West Africa contribute less to sustaining connectivity than larger patches but are nevertheless important

Differences in average Searchtime, individuals/patch=10000

Patch contribution to connectivity

Page 28: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

• development of new spatial algorithms software (OpenSource) • spatial pattern analysis created value for BIOTA

– assessment of patch relevance for conservation planning– improvement in species distribution models

(e.g. overestimation)…– usefulness of this analysis in South Africa and Mexico for

conservation planning & resource management (SANBI, CONABIO)

Application & Outlook

talk 1.4

Page 29: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

... and beyond?

– the spatial analysis can be extended to a global biodiversity monitoring scheme using remote sensing in order to:

– track near real-times spatial ecosystem changes– identify biodiversity threats through

– increased edge effects– isolation of remnants etc.

Page 30: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic

... and beyond?

– the spatial analysis can be extended to a global biodiversity monitoring scheme using remote sensing in order to:

– track near real-times spatial ecosystem changes– identify biodiversity threats through

– increased edge effects– isolation of remnants etc.

– the spatial analysis can be improved from being based on categorical landcover to continuous information about landcover like

– fractional cover – quality of cover (e.g. degradation) talk 1.3

Page 31: Spatial pattern analyses across Africa for a better ... · PDF file"Biodiversity of Africa ... In-house software development for spatial analysis r.pi (raster patch index) - basic