spinach ™ splice sensor a fluorescent drug screening platform
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A first-in-class splice sensor assay
Lucerna, Inc. is a biotech company with a proprietary fluorescent aptamer technology developed by a team of experts in RNA biology. We are located in the Downstate Technology Incubator, Brooklyn, NY.
The Spinach™ Technology has highly versatile applications:• Drug Discovery – modular platform, mix-and-read, HTS assays• RNA Imaging – Live-cell imaging of endogenous mRNAs and non-coding RNAs• R&D Toolkits – Customized RNA tools for molecular detection and diagnostics
Spinach™ is the RNA version of the green fluorescent protein (GFP). It is genetically encodable with proven utility for imaging RNA in living cells and measuring cellular metabolites in HTS assay format.
Who
Why
What
Introducing Lucerna, Inc.
Pre-Clinical
• H3 Biomedicine (cancer)
• PTC Therapeutics (Familial dysautonomia)
• PTC Therapeutics (Huntington’s disease)
Clinical Trials
• Roche / PTC (Spinal muscular atrophy)
Approved
• Biogen / Ionis (Spinal muscular atrophy)
• Sarepta Therapeutics (Duchenne muscular atrophy)
Splice Modulating Therapeutics
Compare Current Methods to Spinach™ Assay
RT-PCR/qPCR PNA-based FRET RNA-seq Mini-gene splice reporter
Spinach™ splice assay
High-throughput
Fast
Simple
Requires optimization
Instrumentation Simple Complex Complex Simple Simple
Mix-and-read
Endogenous mRNA
Translation-independent
Pre-mRNA
Exon 1 Exon 2 Exon 3
Intron 1 Intron 2
Exon 1 Exon 3Skips exon 2
Exon 1 Exon 2Skips exon 3
Splice sensor:
Sensor dye:
Target recognition region
Green fluorescenceNo fluorescence
Correct splicingExon 1 Exon 10Exon 1 Exon 2
Incorrect splicingExon 3
Lucerna™ Splice Sensor Assay
Lucerna has a phase I grant to develop a HTS assay for new cancer therapeutics What is pyruvate kinase (PKM)?
It is the enzyme that catalyzes the final step in glycolysis
Forms two isoforms: PKM1 (exon 10 skipping) and PKM2 (exon 9 skipping)
What happens in the cell?
In normal healthy cells, PKM1 is expressed
In cancer cells, PKM2 is expressed to produce the needed energy
Why PKM2 isoform is a good target?
PKM2 knockdown - reduces tumor formation and increases apoptosis
PKM2 knockdown - enhances anti-cancer drug efficacy
Targeting PKM2 proteins alone cannot completely block tumorigenic activities
Splice Sensor Assay for Cancer Therapeutics
PKM1 splice sensor fluorescence: 30-fold selective increase in the presence of
PKM1 RNA (normal isoform) PKM1 splice sensor response is fast and
stable
PKM2 splice sensor fluorescence 300-fold selective increase in the presence
of PKM2 RNA (cancerous isoform) PKM2 splice sensor response is fast and
stable
Lucerna™ Splice Sensor Fluorescence
PKM2 Splice Sensor
Demonstrates high selectivity and sensitivity toward PKM2 RNA
Active over a broad range of PKM2 RNA concentrations
PKM2 Splice Sensor is Selective and Sensitive
9“Spinach” “Corn” “Radish”“Broccoli”“Eggplant”
Spinach™ Aptamers in Other Colors
10
LucernaTM Splice Sensor Platform Summary
Fast, Selective, Sensitive
Stable assays, over 12 hours
Customizable, Target any RNA Isoform of Interest
Study designs for endogenous mRNAs, no artificial systems
Versatile, HTS Assays, Mix-and-read
Applications for biochemical and cell-based assays
Multiplexing with multiple colors and wavelengths
Adapted from Scotti et al., Nature Reviews Genetics 17,19–32(2016)
Diseases Caused by Aberrant Splicing
Disease Gene(s) affected Splicing effectMuscular:
Dilated cardiomyopathy LMNA, RBM20 Gene target mis-splicing, exon extension
Duchenne muscular dystrophy DMD Frameshift
Spinal muscular atrophy SMN1 Altered protein stability
Neuro:
ALS TARDP, FUS Gene target mis-splicing
Leukodystrophy ADLD Gene target mis-splicing
Parkinson disease PINK1, MAPT, ATP6AP2 Increased exon inclusion, exon skipping
Other:
Cancer BCL-x, BRAF, CD44, PKM, VEGF….. Various mechanisms
Lipodystrophy LMNA Intron retention
Progeria LMNA Exon truncation
Opportunities with the Splice Sensor Technology
Partner Drug Discovery Platform – partner the technology platform to co-develop a drug discovery assay for internal R&D
Partner Biotech Toolkits – by licensing the technology for a wide range of biotech toolkits in the near term for development and commercialization.
Partner Research Platform - by licensing the splice sensor platform as a research tool to institutions, pharma and biotech companies.
Website:Lucerna, Inc.TM
Contact:Karen Wue: [email protected]: 646.504.5697
Location:Downstate Technology Center760 Parkside Avenue, Suite 327B
Brooklyn, NY 11226
Lucerna, Inc.TM - Thank You
www.lucernatechnologies.com