tam66274: ultra-low gossypol cottonseed keerti s. rathore · 2019-08-02 · tam66274: ultra-low...

37
TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology & Dept. of Soil & Crop Sciences Texas A&M University System Cotton Breeders Tour, Texas A&M Univ. July 23, 2019

Upload: others

Post on 16-Jul-2020

0 views

Category:

Documents


0 download

TRANSCRIPT

Page 1: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

TAM66274: Ultra-low Gossypol Cottonseed

Keerti S. Rathore

Institute for Plant Genomics and Biotechnology

& Dept. of Soil & Crop Sciences

Texas A&M University System

Cotton Breeders Tour, Texas A&M Univ.

July 23, 2019

Page 2: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

Production Exports

World 25,970

China 6,532 16

India 6,432 849

USA 3,553 2,330

Pakistan 2,308 120

Burkina Faso 290 256 (Gold: #1 and Cotton: #2)

Mali 231 152 (Gold: #1 and Cotton: #2)

Cote d'Ivoire 183 174

Cameroon 109 98

Benin 131 125 (Cotton: #1)

Chad 48 41

Togo 38 33

Tanzania 82 44

Egypt 114 33

Zimbabwe 54 38

Nigeria 44 11

Cotton Production and Exports 1,000 Metric Tons (2014-15)

Sources: FAS/USDA - May, 2015; PRB – 2016; http://atlas.media.mit.edu/en/

Page 3: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

Production Global Hunger Index

World 25,970

China 6,532 25th

India 6,432 103rd

Pakistan 2,308 106th

Burkina Faso 290 89th

Mali 231 90th

Cote d'Ivoire 183 85th

Cameroon 109 71st

Benin 131 80th

Chad 48 118th

Togo 38 80th

Tanzania 82 95th

Egypt 114 61st

Zimbabwe 54 107th

Nigeria 44 103rd

Cotton Production 1,000 Metric Tons (2014-15) &

Global Hunger Index (2018)

Sources: FAS/USDA - May, 2015; PRB – 2016; http://atlas.media.mit.edu/en/

Page 4: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

Rampant protein-calorie malnutrition in many poor countries

- cereal-based diets do not provide enough protein

• Brown rice 7.3% Protein (75 - 95% calories in some countries)

• Maize 9.8%

• Millet 11.5%

• Sorghum 8.3%

• Wheat 10.6%

• Cassava 1.0%

• Yam 2.0%

Page 5: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

Ultra-low Gossypol Cottonseed (ULGCS)

From Conception to Deregulation of TAM66274

(https://www.aphis.usda.gov/brs/aphisdocs/17_29201p.pdf)

Page 6: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

Global Cotton Lint Production in 2014 = 26 MMT

Global Cottonseed Production in 2014 = 47 MMT (~10.5 MMT Protein)

Can meet the protein requirements of 575 million people/year (50 g/day)

Presence of toxic gossypol prevents the use of cottonseed as food &

also limits its use as feed

Page 7: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

• Protein content of the seed is about 22.5%; good quality protein.

• Its use for human consumption or animal feed is limited by the presence of gossypol in the seed glands.

• Gossypol is toxic to non-ruminant animals, including pigs, chicken and humans. It damages heart and liver.

• Meal used as feed for the cattle – gossypol binds to lysine thus reducing the nutritional value of the meal.

• Gossypol typically removed during the processing of cottonseed to obtain edible oil.

Gossypol

O

HO

HO

HO

HO

CHO

OH

CHO

HO

HO

O

O

CHO

HO

HO

O

O

+

Desoxyhemigossypol

(dHG)

Heliocide H2

Heliocide H3

Hemigossypol

(HG)

+

CHO

HO

HO

O

O

Hemigossypolone

(HGQ)

CHO

HO

HO

O

O

Heliocide H1

CHO

HO

HO

O

O

HeliocideH4

Myrcene

-Ocimene

HO

HO

CHO

OH

OH

OH

HCO

OH

Gossypol

(G)

OH

8-Hydroxy-(+)-

-cadinene

(+)--CadineneOPP

Farnesyldiphosphate

(FDP)

dCS

X

Page 8: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

• Cottonseed Oil (gossypol removed during the processing)

• Feed for cattle either directly as seed or as meal

following oil extraction (in limited quantities)

Current Use of Cottonseed in Human Nutrition

Gossypol is Toxic to Monogastric Animals

Page 9: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

• 3.66 kg of crude protein is converted to 0.83 kg of

milk protein per day (PCR = 4.4)

• Feed conversion ratio (FCR): 5.8

• Protein Conversion Ratio (PCR): 20

Cows are Inefficient in Converting Crude Protein into Animal Protein

FCR: Feed consumed / weight gain

PCR: Feed Protein consumed/ Edible Animal Protein Produced

Page 10: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

Protein Conversion Ratio

20

5.7 4.7

8.85.74.6

Tilman and Clark (2014) Nature 515:518

Claude Boyd (2005) Global Aquaculture Advocate 73-74

2.6

7.7

Page 11: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

• McMichael discovered a GLANDLESS mutant of cotton

in 1954

• Seed from glandless cotton was gossypol-free

• National and International breeding programs launched to transfer the trait to commercial varieties

• Animal nutrition studies showed glandless cottonseed to be a relatively good source of feed for pigs, chicken, and shrimp

• Glandless cottonseed was even considered fit for

human consumption

Attempts to Eliminate Gossypol Using Plant Breeding

Page 12: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

Wild-type ‘Glanded’ Cotton Mutant ‘Glandless’ Cotton

Gossypol: 10,000 ppm Gossypol: 0-10 ppm

Page 13: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

Gossypol and other related terpenoid aldehydes present in the glands in leaves, stem, and floral parts confer resistance to insect pests

These terpenoids are also induced in response to pathogens and serve as phytoalexins

Page 14: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

Traditional Insect Pests that Cause Greater Damage to

Glandless Cotton

Cotton Bollworm (Helicoverpa zea)

Tobacco Budworm (Heliothis virescens)

Beet Armyworm (Spodoptera exigua)

Non-traditional Insects that Damage Glandless Cotton

Black Fleahopper (Spanogonicus albofasciatus)

Pillbug (Porcellia sp.)

Spotted Cucumber Beetle (Diabrotica undecimpunctata)

Grape Colaspis (Maecolaspis flavida)

Green Dock Beetle (Gastrophysa cyanea)

Blister Beetle (Epicauta vittata)

▪ Currently, there is no large-scale cultivation of glandless cotton.

Page 15: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

Desired Trait in Cotton

Seeds:Gossypol <450 ppm (0.45 μg/mg)

(FDA Guidelines)

Leaf & other Organs:

Full Compliment of Gossypol

and Related Terpenoids

for Defense Against

Insects and Diseases

Page 16: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

O

HO

HO

HO

HO

CHO

OH

CHO

HO

HO

O

O

CHO

HO

HO

O

O

+

Desoxyhemigossypol

(dHG)

Heliocide H2

Heliocide H3

Hemigossypol

(HG)

+

CHO

HO

HO

O

O

Hemigossypolone

(HGQ)

CHO

HO

HO

O

O

Heliocide H1

CHO

HO

HO

O

O

HeliocideH4

Myrcene

-Ocimene

HO

HO

CHO

OH

OH

OH

HCO

OH

Gossypol

(G)

OH

8-Hydroxy-(+)-

-cadinene

(+)--CadineneOPP

Farnesyldiphosphate

(FDP)

dCS

XO

HO

HO

HO

HO

CHO

OH

CHO

HO

HO

O

O

CHO

HO

HO

O

O

+

Desoxyhemigossypol

(dHG)

Heliocide H2

Heliocide H3

Hemigossypol

(HG)

+

CHO

HO

HO

O

O

Hemigossypolone

(HGQ)

CHO

HO

HO

O

O

Heliocide H1

CHO

HO

HO

O

O

HeliocideH4

Myrcene

-Ocimene

HO

HO

CHO

OH

OH

OH

HCO

OH

Gossypol

(G)

OH

8-Hydroxy-(+)-

-cadinene

(+)--CadineneOPP

Farnesyldiphosphate

(FDP)

dCS

X

O

HO

HO

HO

HO

CHO

OH

CHO

HO

HO

O

O

CHO

HO

HO

O

O

+

Desoxyhemigossypol

(dHG)

Heliocide H2

Heliocide H3

Hemigossypol

(HG)

+

CHO

HO

HO

O

O

Hemigossypolone

(HGQ)

CHO

HO

HO

O

O

Heliocide H1

CHO

HO

HO

O

O

HeliocideH4

Myrcene

-Ocimene

HO

HO

CHO

OH

OH

OH

HCO

OH

Gossypol

(G)

OH

8-Hydroxy-(+)-

-cadinene

(+)--CadineneOPP

Farnesyldiphosphate

(FDP)

dCS

XO

HO

HO

HO

HO

CHO

OH

CHO

HO

HO

O

O

CHO

HO

HO

O

O

+

Desoxyhemigossypol

(dHG)

Heliocide H2

Heliocide H3

Hemigossypol

(HG)

+

CHO

HO

HO

O

O

Hemigossypolone

(HGQ)

CHO

HO

HO

O

O

Heliocide H1

CHO

HO

HO

O

O

HeliocideH4

Myrcene

-Ocimene

HO

HO

CHO

OH

OH

OH

HCO

OH

Gossypol

(G)

OH

8-Hydroxy-(+)-

-cadinene

(+)--CadineneOPP

Farnesyldiphosphate

(FDP)

dCS

X

O

HO

HO

HO

HO

CHO

OH

CHO

HO

HO

O

O

CHO

HO

HO

O

O

+

Desoxyhemigossypol

(dHG)

Heliocide H2

Heliocide H3

Hemigossypol

(HG)

+

CHO

HO

HO

O

O

Hemigossypolone

(HGQ)

CHO

HO

HO

O

O

Heliocide H1

CHO

HO

HO

O

O

HeliocideH4

Myrcene

-Ocimene

HO

HO

CHO

OH

OH

OH

HCO

OH

Gossypol

(G)

OH

8-Hydroxy-(+)-

-cadinene

(+)--CadineneOPP

Farnesyldiphosphate

(FDP)

dCS

X

O

HO

HO

HO

HO

CHO

OH

CHO

HO

HO

O

O

CHO

HO

HO

O

O

+

Desoxyhemigossypol

(dHG)

Heliocide H2

Heliocide H3

Hemigossypol

(HG)

+

CHO

HO

HO

O

O

Hemigossypolone

(HGQ)

CHO

HO

HO

O

O

Heliocide H1

CHO

HO

HO

O

O

HeliocideH4

Myrcene

-Ocimene

HO

HO

CHO

OH

OH

OH

HCO

OH

Gossypol

(G)

OH

8-Hydroxy-(+)-

-cadinene

(+)--CadineneOPP

Farnesyldiphosphate

(FDP)

dCS

X

O

HO

HO

HO

HO

CHO

OH

CHO

HO

HO

O

O

CHO

HO

HO

O

O

+

Desoxyhemigossypol

(dHG)

Heliocide H2

Heliocide H3

Hemigossypol

(HG)

+

CHO

HO

HO

O

O

Hemigossypolone

(HGQ)

CHO

HO

HO

O

O

Heliocide H1

CHO

HO

HO

O

O

HeliocideH4

Myrcene

-Ocimene

HO

HO

CHO

OH

OH

OH

HCO

OH

Gossypol

(G)

OH

8-Hydroxy-(+)-

-cadinene

(+)--CadineneOPP

Farnesyldiphosphate

(FDP)

dCS

XO

HO

HO

HO

HO

CHO

OH

CHO

HO

HO

O

O

CHO

HO

HO

O

O

+

Desoxyhemigossypol

(dHG)

Heliocide H2

Heliocide H3

Hemigossypol

(HG)

+

CHO

HO

HO

O

O

Hemigossypolone

(HGQ)

CHO

HO

HO

O

O

Heliocide H1

CHO

HO

HO

O

O

HeliocideH4

Myrcene

-Ocimene

HO

HO

CHO

OH

OH

OH

HCO

OH

Gossypol

(G)

OH

8-Hydroxy-(+)-

-cadinene

(+)--CadineneOPP

Farnesyldiphosphate

(FDP)

dCS

X

O

HO

HO

HO

HO

CHO

OH

CHO

HO

HO

O

O

CHO

HO

HO

O

O

+

Desoxyhemigossypol

(dHG)

Heliocide H2

Heliocide H3

Hemigossypol

(HG)

+

CHO

HO

HO

O

O

Hemigossypolone

(HGQ)

CHO

HO

HO

O

O

Heliocide H1

CHO

HO

HO

O

O

HeliocideH4

Myrcene

-Ocimene

HO

HO

CHO

OH

OH

OH

HCO

OH

Gossypol

(G)

OH

8-Hydroxy-(+)-

-cadinene

(+)--CadineneOPP

Farnesyldiphosphate

(FDP)

dCS

X

X8-Hydroxy-(+)-

(HGQ)

dCS

(+)--Cadinene-Cadinene

Hemigossypolone

(dHG)Desoxyhemigossypol

(HG)Hemigossypol

(G)

Gossypol

-OcimeneMyrcene

Farnesyldiphosphate

+ +

(FDP)

Heliocide H2 Heliocide H3 Heliocide H1 Heliocide H4

O

HO

HO

HO

HO

CHO

OH

CHO

HO

HO

O

O

CHO

HO

HO

O

O

+

Desoxyhemigossypol

(dHG)

Heliocide H2

Heliocide H3

Hemigossypol

(HG)

+

CHO

HO

HO

O

O

Hemigossypolone

(HGQ)

CHO

HO

HO

O

O

Heliocide H1

CHO

HO

HO

O

O

HeliocideH4

Myrcene

-Ocimene

HO

HO

CHO

OH

OH

OH

HCO

OH

Gossypol

(G)

OH

8-Hydroxy-(+)-

-cadinene

(+)--CadineneOPP

Farnesyldiphosphate

(FDP)

dCS

XO

HO

HO

HO

HO

CHO

OH

CHO

HO

HO

O

O

CHO

HO

HO

O

O

+

Desoxyhemigossypol

(dHG)

Heliocide H2

Heliocide H3

Hemigossypol

(HG)

+

CHO

HO

HO

O

O

Hemigossypolone

(HGQ)

CHO

HO

HO

O

O

Heliocide H1

CHO

HO

HO

O

O

HeliocideH4

Myrcene

-Ocimene

HO

HO

CHO

OH

OH

OH

HCO

OH

Gossypol

(G)

OH

8-Hydroxy-(+)-

-cadinene

(+)--CadineneOPP

Farnesyldiphosphate

(FDP)

dCS

X

O

HO

HO

HO

HO

CHO

OH

CHO

HO

HO

O

O

CHO

HO

HO

O

O

+

Desoxyhemigossypol

(dHG)

Heliocide H2

Heliocide H3

Hemigossypol

(HG)

+

CHO

HO

HO

O

O

Hemigossypolone

(HGQ)

CHO

HO

HO

O

O

Heliocide H1

CHO

HO

HO

O

O

HeliocideH4

Myrcene

-Ocimene

HO

HO

CHO

OH

OH

OH

HCO

OH

Gossypol

(G)

OH

8-Hydroxy-(+)-

-cadinene

(+)--CadineneOPP

Farnesyldiphosphate

(FDP)

dCS

X

dCH

O

HO

HO

HO

HO

CHO

OH

CHO

HO

HO

O

O

CHO

HO

HO

O

O

+

Desoxyhemigossypol

(dHG)

Heliocide H2

Heliocide H3

Hemigossypol

(HG)

+

CHO

HO

HO

O

O

Hemigossypolone

(HGQ)

CHO

HO

HO

O

O

Heliocide H1

CHO

HO

HO

O

O

HeliocideH4

Myrcene

-Ocimene

HO

HO

CHO

OH

OH

OH

HCO

OH

Gossypol

(G)

OH

8-Hydroxy-(+)-

-cadinene

(+)--CadineneOPP

Farnesyldiphosphate

(FDP)

dCS

X

dCS = -cadinene synthase dCH = -cadinene hydroxylase

(G)

Gossypol

O

HO

HO

HO

HO

CHO

OH

CHO

HO

HO

O

O

CHO

HO

HO

O

O

+

Desoxyhemigossypol

(dHG)

Heliocide H2

Heliocide H3

Hemigossypol

(HG)

+

CHO

HO

HO

O

O

Hemigossypolone

(HGQ)

CHO

HO

HO

O

O

Heliocide H1

CHO

HO

HO

O

O

HeliocideH4

Myrcene

-Ocimene

HO

HO

CHO

OH

OH

OH

HCO

OH

Gossypol

(G)

OH

8-Hydroxy-(+)-

-cadinene

(+)--CadineneOPP

Farnesyldiphosphate

(FDP)

dCS

X

(Cytosol)Mevalonate (MVA) pathway

IPP

DMAPP

Seed-specific, RNAi-mediated Silencing of δ-cadinene synthase Gene

(α-Globulin Promoter::RNAi against δ-Cadinene Synthase)

Page 17: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

0

50

100

150

200

250

300

350

400

Stem Root Pollen SeedLeaf Floral

bud

GU

S A

CT

IVIT

Y

(nm

ole

4-M

U /

mg p

rote

in/

min

)

Seed-specific expression of AGP::gusAin cotton

0

50

100

150

200

250

300

350

400

Control

AGP:gusA

Sunilkumar …… Rathore (2002)

Transgenic Research 11: 347-359

U.S. Patent #7,626,081

Page 18: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

0

2

4

6

8

10

12

Wild-type

3 4 5 6 7 8 9 10

14

LCT66-2

mg

go

ss

yp

ol

mg

-1ti

ss

ue

LCT66-32

10.45 0.54 0.54 0.07* 0.46 0.13*

(n=10) (n=8) (n=8)

1 2 3 4 5 6 7 8 9 101 2 3 4 5 6 7 8 9 101 2

Gossypol Levels in Individual Wild-type

and T1 Cottonseeds

Sunilkumar …… Rathore (2006)

PNAS 103:18054-18059

U.S. Patent #7999148

Page 19: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

Wild-type Null LCT66-2-4 LCT66-32-7

9.65 0.459.19 0.19(n=10) (n=10)

0

2

4

6

8

10

12

14

mg

go

ss

yp

ol

mg

-1ti

ss

ue

0.48 0.02*(n=50)

0.61 0.001*

(n=50)

Gossypol Levels in Individual Wild-type,

Null Segregant, and T2 Cottonseeds

Sunilkumar …… Rathore (2006)

PNAS 103:18054-18059

U.S. Patent #7999148

Page 20: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

6.466.35

7.48

0.15 0.14 0.140.31 0.21 0.38

0.45

0

1

2

3

4

5

6

7

8

2009 2010 2011

ug

goss

ypo

l/m

g se

ed

-ke

rne

l tis

sue

***

Coker 312 66-49B 66-81 66-250

Coker 312

66-49B

66-81

66-250

ULGCS Trait is stable under field conditionsPalle ----- Rathore (2013) Plant Biotech. J.

Seed gossypol content of field-grown plants

Page 21: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

mg

te

rpe

no

ids

mg

-1ti

ss

ue

1.4

1.2

1.0

0.8

0.6

0.4

0.2

0.0

Bract

0.72

0.60

0.48

0.36

0.24

0.12

0.00

Floral Bud

1.8

1.5

1.2

0.9

0.6

0.3

0.0

Boll

mg

te

rpe

no

ids

mg

-1ti

ss

ue

G HGQ H

Terminal bud

Root

5

4

3

2

1

0

G

Petal

8

6

4

2

0

G MG DMG

2.5

2.0

1.5

1.0

0.5

0.0

G HGQ H G HGQ H

G HGQ H dHG dMHG

0.10

0.08

0.06

0.04

0.02

0.00HG MHG

0.6

0.5

0.4

0.3

0.2

0.1

0.0

Levels of Gossypol and Related Terpenoids in

Terminal Bud, Floral Bud, Bract, Petal, Boll, and

Root Tissues

Wild-type Control

LCT66-2

LCT66-32

ULGCS trait is completely tissue specificSunilkumar …… Rathore (2006)

PNAS 103:18054-18059

U.S. Patent #7999148

Page 22: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

Deregulation of TAM66274

(Steps since 2006)

✓ Generate many more additional events, test for desired

phenotype

✓ Molecular analyses – Southerns, insert localization,

silencing of the target gene

✓ Biochemical analysis

✓ Inheritance analysis

✓ Agronomic performance trials (8 trials in 3 states)

✓ Seed composition analysis

✓ Fiber quality analysis

✓ USDA-APHIS petition & FDA dossier submitted (2017)

Page 23: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

Regular Cotton TAM66274

TAM66274: Ultra-low Gossypol Cottonseed (ULGCS)

(Seed-specific, RNAi silencing of δ-cadinene synthase gene)

• Gossypol levels reduced from ~10,000 ppm to ~300 ppm, well below levels

considered safe for human consumption by FDA (450 ppm) and

FAO/WHO (600 ppm)

• Foliage and Floral parts contain normal levels of gossypol for protection

against pests

https://www.aphis.usda.gov/brs/aphisdocs/17_29201p.pdf

➢ Deregulated by USDA-APHIS

(Oct. 17, 2018)

➢ Awaiting FDA approval

Page 24: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

Commercial CottonSeed Gossypol: 10,000 ppm

Insect Protected Foliage

Glandless CottonSeed Gossypol: 10 ppm

No insect protection

TAM66274Seed Gossypol: 300 ppm

Insect Protected Foliage & Floral Tissue

Seed k

ern

el

Leaf

Problem: Seed

Gossypol

Plant Breeding Genetic Engineering

Page 25: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

Can gene editing technology (CRISPR/Cas9)

be used to achieve the same objective?

▪ Targeting the δ-cadinene synthase gene will not work

(large gene family, RNA-seq analysis shows expression

of at least 10 genes in the embryo)

▪ Even if another, single copy target gene is identified,

simple knockout of this gene will not achieve

tissue specificity

▪ CRISPR interference is a possibility, but the plant will

still be considered transgenic because of the need for

tissue-specific expression of guide-RNA and CRISPR

through a transgenic cassette

Page 26: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

STV474 x TAM66274 – BC3F4 Planted for

Seed Increase in North Carolina in 2019

Page 27: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

▪ Feed for poultry and swine

▪ Feed for aquaculture species

▪ Direct use as food

(fortify flour for protein enrichment,

Paruthi Paal)

5.74.7

5.7

4.6

8.8

Possible uses of meal from ULGCS to combat protein malnutrition

2.6

7.7

Page 28: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

Rising Demand for Feed by Poultry Industry (Broiler Production)

FAOStat (2019)

Page 29: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

Rising Demand for Feed by Poultry Industry (Egg Production)

Protein in Global Cottonseed Output = Protein in 1.7 Trillion Eggs

Global Annual Egg Production = 1.4 Trillion FAOStat (2019)

Page 30: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

Source: The State of Fisheries and Aquaculture; FAO 2018

Aquaculture Meets Fish Demand as Ocean Catches Decline

Page 31: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

▪ Aquaculture is the fastest growing food production system globally (8% growth)

▪ Aquaculture projected to supply >60% of fish for human consumption by 2030

▪ Demand for fishmeal and fish oil for aquaculture expected to increase,

however, the supplies likely to decrease

➢ Fishmeal price will rise by 90%

➢ Fish oil price will rise by 70%

▪ Great need for substitutes for fishmeal and fish oil

➢ ULGCS meal (41% protein) and oil could serve as a good substitute

➢ Some cottonseed is already used in aquafeeds

Shrimp Feeding Study: Richardson et al. (2016)

Southern Flounder Feeding Study: Alam et al. (2018)

World Bank Report (2013) #83177-GLB

Agriculture and Rural Development Department, The World Bank Group (2011)

Rising Demand for Feed by Aquaculture Industry

Page 32: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

➢ Used comparative transcriptomics between normal,

glanded cotton and glandless (Hopi) cotton 14 dpa embryos

to identify three gene pairs involved in the development of

glands in cotton

➢ Cotton Gland Formation (CGF1, CGF2 & CGF3) genes

encode transcription factors

➢ Only the CGF3 genes show sequence differences between

glanded and glandless cotton

Janga et al. Plant Biotech. J. (2019)

Identification and Cloning of Genes Involved in

the Development of Glands in Cotton

Page 33: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

Janga et al. Plant Biotech. J. (2019)

Gla

nded

A-G

en

om

e

Gla

ndle

ss

Gla

nded

D-G

en

om

e

Gla

ndle

ss

CGF3, the Main Gene Involved in Gland Development in Cotton

Page 34: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

B

Co

ntr

ol

CG

F3

KO

CG

F2

KO

CRISPR-Cas9-mediated, targeted knockout of CGF2 & CGF3 genes

Janga et al. Plant Biotech. J. (2019)

Page 35: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

µg

terp

en

oid

/g t

issu

e

L254

D254

Overexpression of CGF3 Gene in Cotton Cultures

HG: Hemigossypol

dHG: Desoxyhemigossypol

HGAL: Hemigossylic acid lactone

MHG: Methoxyhemigossypol

dMHG: Desoxymethoxy-hemigossypol

Goss: Gossypol

MG: Methoxygossypol

DMG: Dimethoxygossypol

New tool to increase glands (gossypol)

in the foliage & flowers to boost the natural

defenses of the cotton plant

Janga et al. Plant Biotech. J. (2019)

Page 36: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

USDA-ARS

Robert Stipanovic

Lorraine Puckhaber

Alois Bell

J. Liu

IPGB, TAMU

G. Sunilkumar

LeAnne Campbell

Sabarinath Sundaram

Sylvain Marcel

Sreenath P. Reddy

Devendra Pandeya

Lauren Tollack

Shanna Sherwood

Madhusudhana Janga

Sam Reddy

Robert A. Creelman (John Mullet)

Cotton Inc., TxCOT, TFFC, THECB & Texas AgriLife Research

C. Wayne Smith

Steve Hague

Cotton Inc.

Tom Wedegaertner

Kater Hake

Page 37: TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore · 2019-08-02 · TAM66274: Ultra-low Gossypol Cottonseed Keerti S. Rathore Institute for Plant Genomics and Biotechnology

Questions???