team chem biological water filtration. purification process add cells to possibly contaminated water...
TRANSCRIPT
Team ChemBiological Water Filtration
Purification Process
• Add cells to possibly contaminated water
• Cells take in arsenic and store it
• Cells provide an output (color) signaling the water is clean or needs further processing
• Separate of cells from water
• Possibility for further processing
Devices
• 2 Arsenic Sensors– Sensitive: activated by any arsenic – Non-sensitive: activated by maximum
tolerable arsenic level
• 2 Color Generators
• Arsenic Transport and Storage Device
Arsenic Transport and Storage
Remove the gene that encodes this transport protein
Tripathi, R.D., Srivastava, S., Mishra, S., Singh, N., Tuli, R., Gupta, D.K. and Maathuis, F. Arsenic Hazards: Strategies for Tolerance and Remediation by Plants. Trends in Biotechnology. 2007, 25.4, 158-165.
Arsenic Measurement
Device Level Diagram
Color Generator 1
(constitutively active)
Sensitive Arsenic Sensor
Non-Sensitive Arsenic Sensor Color Generator 2
Arsenic Transport and Storage Device
(constitutively active)
Where is Concentration
Read?
Outside Vacuole
Inside Vacuole or
with a Timer
Simulation: Pure Water
Green Color Generator
(constitutively active)
Sensitive Arsenic Sensor
Non-Sensitive Arsenic Sensor Red Color Generator
Arsenic Transport and Storage Device
(constitutively active)
Result: Cells Stay Green → Separation
Simulation: Maximum Arsenic
Result: Cells Turn Red → Separate and Process Again
Green Color Generator
(constitutively active)
Sensitive Arsenic Sensor
Non-Sensitive Arsenic Sensor Red Color Generator
Arsenic Transport and Storage Device
(constitutively active)
As As MAXIMUM
ARSENIC
Timing Diagram: Maximum Arsenic
0
1
0
1
0
1
0
1
0
1
Green Color Generator
Sensitive [As] Sensor
Transport and Storage
Non- Sensitive
[As] Sensor
Red Color Generator
t=0No Arsenic
Contaminated Water Added
Midlevel [As] Maximum [As]
Timing Diagram: Midlevel Arsenic
0
1
0
1
0
1
0
1
0
1
Green Color Generator
Sensitive [As] Sensor
Transport and Storage
Non- Sensitive
[As] Sensor
Red Color Generator
t=0No Arsenic
Contaminated Water Added
Midlevel [As] Maximum [As]
Biological PartsBackground System
ARR2ARR1
Biological PartsControl System
YCF1YCF1 GSH1GSH1
RCGD:BBa_K274100
RCGD:BBa_K274100
GCGD:BBa_K274004
GCGD:BBa_K274004
X-RepressorX-Repressor
[As]
P(x)
P(y)
P(z)Y-RepressorY-Repressor
[As]max
Cellular Chassis
[Source:http://www.botany.hawaii.edu/nlc_biology/1406/lab/r2/slide6.jpg]
[Source: http://www.ppws.vt.edu/scott/weed_id/eldde.htm]
Testing/Debugging• Cell Death
– Effectiveness of ARR1, ARR1, YCF1, GSH1
• Need to determine Vacuole limits
• Testing Color Generators
• Promoter Design
[Source: http://www.sciencephoto.com/images/]
Global Impacts
Impacts
If this process succeeds:
• Solves one of the most problematic issues of the developing world, saving millions of lives. – 70 million people are affected in
Bangladesh alone - arsenic in ground water is the cause of 23% of all the deaths there!
Why Biological Water Filtration by Team Chemistry?
• No energy requirement (operates independent of electricity)– Accessibility to effective water filtration
technology even in rural parts of the developing world
• Very low cost of sustaining system
• The end product is not a waste– Possibility of selling to pharmaceutical companies
and turning a profit
Open Issues
• Elodea is the current choice of organism– Common water weed: robust, packaged for
surviving in water• The cost of entire project is unknown.• Legal issues attached to introducing
genetically modified organisms into the environment?
• Length of effectiveness is unknown – (How long until the organism reaches max arsenic
uptake capacity?)• The process of genetically modifying plants is
very slow…
Go/ No Go?
Citations
• Saccharomyces Genome Database www.yeastgenome.org
• Standard Registry of Biological Parts www.partregistry.org