template matching for detection of starry milia-like cysts in dermoscopic images

1
Department of Electrical and Computer Engineering Introduction Results and Conclusions Methods Milia-like cysts are small white or ivory round/oval structures seen on dermoscopy images, from a device that emphasizes deep structures). MLCs are categorized into starry (< 1/3 mm diameter) and cloudy ( > 1/3 mm diameter). MLCs are often found in seborrheic keratosis (SK), the most common benign lesion. An example of both types of MLCs within an SK can be seen here. Starry MLCs (stars) have a sensitivity of 90.5% and specificity of 45.7% for seborrheic keratosis. 1 MLCs, if detectable, can aid in distinguishing benign lesions from malignant lesions, such as melanoma. MLC mimics—scales, bubbles, and skin pores, must be removed to achieve automatic MLC detection. Multiple template correlations are needed to optimally characterize fine structures 3 correlations used unprocessed ROIs, shape-limited ROIs, and histogram- equalized ROIs. A template-matching method gives a useful, quantized, size determination For ROIs with ill-defined borders, shape can be determined based on central ROI statistics Central statistics are also key in MLC versus mimic decision Starry MLCs can be distinguished from close mimics with acceptable accuracy Fine ROI features and ROI neighborhoods are important in medical imaging. . 1. Pre-processing Lesion borders were manually drawn, bubble and hairs were removed 2. Lesion divided into 13x13 blocks Lesion area was segmented into 13x13 blocks. The brightest pixel in each block was chosen as the center of a candidate starry MLC (star). Stars can vary in size, therefore only the 11x11 center of stars were analyzed to allow for a measure of consistency (Figure 2). 3. Candidate stars selection A 3x3 mean filter was applied to reduce image noise. The mean of the lesion intensity was calculated. Candidate stars were removed if they did not exceed the threshold: 0.85*(lesion mean intensity). 4. Correlation coefficient— Template matching Correlation γ(x,y) with star templates created by characterizing pre-selected example starry MLCs: where x = 0, 1, 2, 3 . . ., M-1, y = 0, 1, 2 . . ., N-1, MxN is the size of f, is the mean value of pixels in w and is the mean value of the region that is coincident with the current location of w. 2 The correlation coefficient was scaled to between -1 to 1, with 1 having the strongest correlation. Starry MLCs can vary in size, therefore three differently sized templates were used: 11x11, 17x17, and 23x23. 5. Application of Range as a threshold All starry MLCs have a bright center pixel and radially decreasing intensity. Therefore, we used the Range of the maximum and minimum pixel intensity values within the 11x11 center. Those that met the threshold: 0.14, 0.075, and 0.03 (scaled to between 0 and 1), respectively, continued for further processing. Figure 5: ROC for MLC detection--SK vs. melanoma. References 1. Stricklin, S.M., Stoecker, W.V., ..& Mahajan, S.K. (2011). Cloudy and starry milia-like cysts: How well do they distinguish seborrheic keratoses from malignant melanoma J European Academy of Dermatology and Venereology, 25(10), 1222-4. 2. Gonzalez, R.C. & Woods, R.E. (2002). Digital Image Processing. 2nd ed. New Jersey: Prentice Hall, pp. 698-704. Analysis and Design 6. Star shape analysis Shape features (e.g. area, perimeter, roundness, solidity, major and minor axis, eccentricity, and major axis/equivalent diameter) and the second correlation coefficient between the candidate star and the ideal star template are then calculated. SAS Logistic Regression Results Lesion borders drawn, hairs and bubbles removed Lesion divided into 13x13 blocks Candidate star selection: 0.85* (Lesion mean intensity) Viswanaath Subramanian 1 , Randy H. Moss 1 , Ryan K. Rader 2 , Sneha K. Mahajan 1 , William V. Stoecker 1,2 1 Dept. of Electrical and Computer Engineering, Missouri University of Science & Technology, Rolla, MO USA, 2 Stoecker & Associates, Rolla, MO USA Template Matching for Detection of Starry Milia-like Cysts in Dermoscopic Images 1 st Correlation coefficient: star templates Threshold from star center intensity range Candidate star shape analysis Logistic regression analysis Figure 1: SK with MLCs Figure 2: Starry MLC ROI detail, red circle: central pixel, black rim: 11x11 region for range determination Parameter Chi-square Pr > Chi-sq Star size 24.69 <.0001 First correlation coefficient with ideal star template 29.17 <.0001 Intensity difference between star and surround 25.60 <.0001 Mean of 11x11 star center 8.68 0.0032 Rise time of 11x11 star center 30.83 <.0001 Correlation coefficient to the star shape template 11.19 0.0008 Equalized correlation coefficient 29.24 <.0001 7. Notes on methods. Region of interest (ROI): star MLC candidate Block size 13x13 optimized: ↑ size ⇒ ↑ computational efficiency, ↓ size ⇒ ↓ loss from dupl. MLCs Lesion size determined by correlation with 3 templates: 11x11, 17x17, 23x23 3 thresholds needed to ↓ false positives: lesion mean threshold, duplicate removal, and range threshold Star shape determined after 3x3 average filter smoothing: area pixels with intensity within 10% of smoothed object intensity 2 nd Correlation coefficient: shape templates Figure 3: Formation of shape of the star for a true starry MLC. (a) Original image Seborrheic Keratosis. (b) Lesion and bubble masks applied on blue plane. (c) Enlarged version of a starry MLC. (d) Histogram equalized starry MLC. (e) Enlarged version of smoothed starry MLC. (f) Initial shape of the star. (g) Thinned – one pixel width shape of the star. (h) Final filled shape of the star shifted to the center.

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A poster explaining the work done in detecting Starry Milia like Cysts in Dermoscopic images using template matching techniques

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Page 1: Template Matching for Detection of Starry Milia-like Cysts in Dermoscopic Images

Department of Electrical and Computer Engineering

Introduction

Results and Conclusions

Methods

Milia-like cysts are small white or ivory round/oval structures seen on dermoscopy images, from a device that emphasizes deep structures). MLCs are categorized into starry (< 1/3 mm diameter) and cloudy ( > 1/3 mm diameter). MLCs are often found in seborrheic keratosis (SK), the most common benign lesion. An example of both types of MLCs within an SK can be seen here.

Starry MLCs (stars) have a sensitivity of 90.5% and specificity of 45.7% for seborrheic keratosis.1

MLCs, if detectable, can aid in distinguishing benign lesions frommalignant lesions, such as melanoma.

MLC mimics—scales, bubbles, and skin pores, must be removed to achieve automatic MLC detection.

Multiple template correlations are needed to optimally characterize fine structures 3 correlations used unprocessed ROIs, shape-limited ROIs, and histogram-equalized ROIs. A template-matching method gives a useful, quantized, size determination For ROIs with ill-defined borders, shape can be determined based on central ROI statistics Central statistics are also key in MLC versus mimic decision Starry MLCs can be distinguished from close mimics with acceptable accuracy Fine ROI features and ROI neighborhoods are important in medical imaging. .

1. Pre-processingLesion borders were manually drawn, bubble and hairs were removed

2. Lesion divided into 13x13 blocksLesion area was segmented into 13x13 blocks. The brightest pixel in each block was chosen as the center of a candidate starry MLC (star). Stars can vary in size, therefore only the 11x11 center of stars were analyzed to allow for a measure of consistency (Figure 2).

3. Candidate stars selectionA 3x3 mean filter was applied to reduce image noise. The mean of the lesion intensity was calculated. Candidate stars were removed if they did not exceed the threshold: 0.85*(lesion mean intensity).

4. Correlation coefficient—Template matchingCorrelation γ(x,y) with star templates created by characterizing pre-selected example starry MLCs:

where x = 0, 1, 2, 3 . . ., M-1, y = 0, 1, 2 . . ., N-1, MxN is the size of f, is the mean value of pixels in w and is the mean value of the region that is coincident with the current location of w.2 The correlation coefficient was scaled to between -1 to 1, with 1 having the strongest correlation. Starry MLCs can vary in size, therefore three differently sized templates were used: 11x11, 17x17, and 23x23.5. Application of Range as a threshold

All starry MLCs have a bright center pixel and radially decreasing intensity. Therefore, we used the Range of the maximum and minimum pixel intensity values within the 11x11 center. Those that met the threshold: 0.14, 0.075, and 0.03 (scaled to between 0 and 1), respectively, continued for further processing.

Figure 5: ROC for MLC detection--SK vs. melanoma.

References1. Stricklin, S.M., Stoecker, W.V., ..& Mahajan, S.K. (2011). Cloudy and starry milia-like cysts: How well do they distinguish

seborrheic keratoses from malignant melanoma J European Academy of Dermatology and Venereology, 25(10), 1222-4.2. Gonzalez, R.C. & Woods, R.E. (2002). Digital Image Processing. 2nd ed. New Jersey: Prentice Hall, pp. 698-704.

Analysis and Design

6. Star shape analysisShape features (e.g. area, perimeter, roundness, solidity, major and minor axis, eccentricity, and major axis/equivalent diameter) and the second correlation coefficient between the candidate star and the ideal star template are then calculated.

SAS Logistic Regression Results

Lesion borders drawn, hairs and bubbles removed

Lesion divided into 13x13 blocks

Candidate star selection: 0.85* (Lesion mean intensity)

Viswanaath Subramanian1, Randy H. Moss1, Ryan K. Rader2, Sneha K. Mahajan1, William V. Stoecker1,2

1Dept. of Electrical and Computer Engineering, Missouri University of Science & Technology, Rolla, MO USA,

2Stoecker & Associates, Rolla, MO USA

Template Matching for Detection of Starry Milia-like Cysts in Dermoscopic Images

1st Correlation coefficient: star templates

Threshold from star center intensity range

Candidate star shape analysis

Logistic regression analysis

Figure 1: SK with MLCs

Figure 2: Starry MLC ROI detail, red circle: central pixel, black rim: 11x11 region for range determination

Parameter Chi-square Pr > Chi-sq

Star size 24.69 <.0001

First correlation coefficient with ideal star template

29.17 <.0001

Intensity difference between star and surround

25.60 <.0001

Mean of 11x11 star center 8.68 0.0032

Rise time of 11x11 star center

30.83 <.0001

Correlation coefficient to the star shape template

11.19 0.0008

Equalized correlation coefficient

29.24 <.0001

7. Notes on methods. Region of interest (ROI): star MLC candidate Block size 13x13 optimized: ↑ size ↑ ⇒

computational efficiency, ↓ size ↓ loss from ⇒dupl. MLCs

Lesion size determined by correlation with 3 templates: 11x11, 17x17, 23x23

3 thresholds needed to ↓ false positives: lesion mean threshold, duplicate removal, and range threshold

Star shape determined after 3x3 average filter smoothing: area pixels with intensity within 10% of smoothed object intensity

2nd Correlation coefficient: shape templates

Figure 3: Formation of shape of the star for a true starry MLC. (a) Original image – Seborrheic Keratosis. (b) Lesion and bubble masks applied on blue plane. (c) Enlarged version of a starry MLC. (d) Histogram equalized starry MLC. (e) Enlarged version of smoothed starry MLC. (f) Initial shape of the star. (g) Thinned – one pixel width shape of the star. (h) Final filled shape of the star shifted to the center.