the earliest stages of mitochondrial adaptation to low ... · pdf filecurrent biology, volume...
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Current Biology, Volume 26
Supplemental Information
The Earliest Stages
of Mitochondrial Adaptation to Low Oxygen
Revealed in a Novel Rhizarian
Ryan M.R. Gawryluk, Ryoma Kamikawa, Courtney W. Stairs, Jeffrey D.Silberman, Matthew W. Brown, and Andrew J. Roger
Figure S1
Paracercomonas sp. Panama61
Cercomonas media xt182
Paracercomonas minima SW2
Nucleocercomonas sp. HFCC 921
Neoheteromita globosa
ENV-EF023473
Cercomonas nebulosa xt164
Cavernomonas stercoris CavE
Paracercomonas oxoniensis WA8
Nucleocercomonas praelonga HFCC 920
Nucleocercomonas sp. HFCC 919Paracercomonas sp. HFCC 918
Paracercomonas sp. Panama83
Cercomonas dactyloptera C43
Agitata tremulans
Limnophila oxoniensis
Cercomonas paraglobosa 193E
Paracercomonas sp. xt159
Cercomonas longicauda
Cercomonas ambigua WA82
Cercomonas celer C51
Allapsa vibrans
Paracercomonas ambulans W80
Cercomonas hederae IVY20
Cercomonas mtoleri BuffaloH5
Cercomonas effusa Beaver-Creek
Pseudodifflugia cf. gracilis
Cercomonas karpovi C84
Cercomonas parincurva IVY7A
Cercomonas sp. AZ6
Paracercomonas crassicauda ATCC50316
Paracercomonas sp. Panama101
Paracercomonas producta WA42
Eocercomonas sp. C76
Cercomonas sphagnicola CASphI
Eocercomonas tribula IVY16A
Cercomonas elliptica N8
Cercomonas laeva C72
Cercomonas vacuolata Wyth3.8
Paracercomonas sp. HFCC 915
Cercomonas lenta WA84
Cercomonas rapida 186E
Cercomonas pigra CASphII
Cryothecomonas aestivalis 1
Cercomonas sp. Panama69
Cercomonas aff. longicauda ATCC50317
Cercomonas gigantica NY1
Paracercomonas sp. Panama107
Paracercomonas sp. HFCC 913
Paracercomonas saepenatans CA5HKV
Cercomonas jutlandica SCCAP C161
Cercomonas lata C85
Cercomonas magna IVY8C
Aurigamonas solis Galicia
Cercomonas sp. HFCC89
Cercomonas mutans W40a
Paracercomonas metabolica CS9
Sandona ubiquita
Cercomonas aff. longicauda ATCC50318
Paracercomonas astra W89
Cercomonas kolskia C59
Paracercomonas sp. xt181
Nanofila marina
Thaumatomastix sp. ATCC50250
Paracercomonas sp. HFCC 911
ENV-EF024294
Paracercomonas sp. HFCC 917
Cercomonas fastiga 183D
Metabolomonas insania HFCC 922
coastal sediment clone 73.4
Cercomonas hiberna W70
Lecythium sp.
Brevimastigomonas motovehiculus
Spongomonas minima ATCC50405
Paracercomonas sp. HFCC 916
Cercomonas ricae IB3
Cercomonas volcana C18
Cercomonas sp. ATCC50395
Bodomorpha minima ATCC50339
Paracercomonas pleomorpha 19-5C
Paracercomonas tenuis SA-S
Cavernomonas mira CavA
Paracercomonas compacta xt198
Cercomonas sp. C83
Paracercomonas elongata IVY11
Paracercomonas virgaria C71
Cercomonas clavideferens 1712D
Paracercomonas paralaciniaegerens 311C
Eocercomonas ramosa C80
Cercomonas rotunda IVY9G
Paracercomonas filosa 171F
Paracercomonas sp. Panama89
Cercomonas paravarians NZ 17E
Cercomonas parambigua WA22
Cercomonas zhukovi xt202
Paracercomonas sp. HFCC 914
Brevimastigomonas anaerobica ATCC50367
Paracercomonas marina ATCC50344
Pseudopirsonia mucosa
Paracercomonas sp. HFCC 910
Cercomonas braziliensis B13
Eocercomonas sp. E
Paracercomonas sp. Panama67
Eocercomonas minuscula C73
Cercomonas radiata xt134
Massisteria marina
Eocercomonas uvella 117E
Cercomonas kiaerdammane NY12
Mesophila limnetica
Eocercomonas echina IVY19
Paracercomonas ekelundi SCCAP C1
Paracercomonas sp. HFCC 912
Cercomonas phylloplana IIgrassA
Paracercomonas vonderheydeni NZ1-5C
Paracercomonas sp. WA10
Cercomonas deformans 208DCercomonas sp.
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Paracercomonas
Cercomonas
Eocercomonas
Cavernomonas
MetabolomonasNucleocercomonas
0.4
Tetrahymena thermophila XP_001014703.2
Syntrophobacter fumaroxidans MPOB YP_844311.1
Paramecium tetraurelia strain d4-2 XP_001439561.1
Rickettsia prowazekii str. Madrid E NP_220520.1
Euglena gracilis
Stenotrophomonas maltophilia D457 YP_006184455.1
Pavlova sp CCMP45 CAMPEP_0190508040
Trypanosoma brucei TREU927 XP_847488.1
Amycolatopsis benzoatilytica WP_020662648.1
Thermaerobacter subterraneus WP_006902676.1
Chlorobium phaeobacteroides BS1 YP_001960889.1
Gloeochaete witrockiana SAG46_84 CAMPEP_0194001040
Capsaspora owczarzaki ATCC 30864 XP_004349768.1Monosiga brevicollis MX1 XP_001748251.1
Alexandrium tamarense, Strain CCMP1771 CAMPEP_0116412044
Schizochytrium aggregatum, Strain ATCC28209 CAMPEP_0202106032
Filamoeba nolandi, Strain NC-AS-23-1 CAMPEP_0168560416
Emiliania huxleyi CCMP1516 XP_005776983.1
Oxyrrhis marina, Strain LB1974 CAMPEP_0204958458
Spirochaeta sp. L21-RPul-D2 AHC16225.1
Micromonas sp. RCC299 XP_002505866.1
Frankia sp. CcI3 YP_479792.1
Chlamydomonas reinhardtii XP_001689842.1
Ustilago maydis 521 XP_757319.1
Stereomyxa ramosa, Strain Chinc5 CAMPEP_0174263458
Phytophthora sojae EGZ12571.1
Salinibacter ruber DSM 13855 YP_444630.1
Dechloromonas aromatica RCB YP_286063.1
Acanthamoeba castellanii
Burkholderia cenocepacia AU 1054 YP_624286.1
Physcomitrella patens XP_001780340.1
Mycobacterium marinum WP_020732066.1
Arabidopsis thaliana NP_201477.1
Lotharella globosa CCCM811 CAMPEP_0190173042
Prosthecochloris aestuarii DSM 271 YP_002016903.1
Rhodococcus sp. R1101 WP_016935300.1
Azoarcus toluclasticus WP_018990151.1
Thraustochytrium sp. LLF1b CAMPEP_0193121964
Brevimastigomonas motovehiculus
Andalucia godoyi
Neisseria flavescens WP_003678835.1
Streptomyces sp. AA4 WP_009072549.1
Cyanidioschyzon merolae strain 10D XP_005539527.1
Cryptococcus neoformans var. neoformans JEC21 XP_572631.1
Gymnochlora sp., Strain CCMP2014 CAMPEP_0167760392
Magnetospirillum sp. SO-1 WP_008619925.1
Xanthomonas oryzae pv. oryzae KACC 10331 YP_200947.1
Brevibacillus massiliensi WP_019122849.1
Thecamonas trahens
Brevibacterium mcbrellneri WP_005885758.1
Isochrysis galbana CCMP1323 CAMPEP_0193682924
Sphaeroforma arctica
Nocardia farcinica IFM 10152 YP_117156.1
Mayorella sp, Strain BSH-02190019 CAMPEP_0174229508
Guillardia theta CCMP2712 XP_005841533.1
Undescribed cercomonad sp. D1 CAMPEP_0193520050
Phaeodactylum tricornutum CCAP 1055/1 XP_002186498.1
Wolinella succinogenes DSM 1740 NP_908029.1
Chloroherpeton thalassium ATCC 35110 YP_001995374.1
Naegleria gruberi XP_002674784.1
Paulinella chromatophora
Blastocystis hominis CBK22804.2Cafeteria sp., Strain Caron Lab Isolate CAMPEP_0196780626
Thermosynechococcus elongatus BP-1 NP_682167.1
Paracercomonas marina CLE00001872/00000488
Bradyrhizobium sp. BTAi1 YP_001236432.1
Durinskia baltica, Strain CSIRO CS-38 CAMPEP_0200064566
Ralstonia pickettii DTP0602 YP_008596752.1
Flexistipes sinusarabici DSM 4947 YP_004602940.1
Campylobacter jejuni subsp. jejuni ICDCCJ07001 YP_004065993.1
Ochromonas sp., Strain BG-1 CAMPEP_0173167786
Deinococcus radiodurans R1 NP_294676.1
Candidatus Pelagibacter sp. IMCC9063 YP_004357688.1
Nitrococcus mobilis WP_004999023.1
Veillonella dispar WP_005385094.1
Thauera sp. 28 WP_002924945.1
Desulfovibrio desulfuricans WP_022659078.1
Volvox carteri f. nagariensis XP_002949632.1
Rhodothermus marinus DSM 4252 YP_003289504.1
Carboxydothermus hydrogenoformans Z-2901 YP_358935.1
Beggiatoa alba WP_002690011.1
Dictyostelium discoideum AX4 XP_641069.1
Thermus thermophilus HB8 YP_144720.1
Batrachochytrium dendrobatidis JAM81 XP_006680864.1
Alkalilimnicola ehrlichii MLHE-1 YP_742173.1
Bigelowiella natans, Strain CCMP1242 CAMPEP_0185234318
Saccharomyces cerevisiae S288c NP_012774.1
Mus musculus BAE26754.1
Xylella fastidiosa Temecula1 NP_778583.1
Guttulinopsis vulgaris
Reticulomyxa filosa ETO06113.1
Schizosaccharomyces pombe 972h- NP_594319.1
Nostoc punctiforme PCC 73102 YP_001866245.1
Palpitomonas bilix CAMPEP_0113912216
Polysphondylium pallidum PN500 EFA83455.1
Ostreococcus tauri XP_003082803.1
Methylomonas sp. MK1 WP_020482371.1
Mortierella verticillata NRRL 6337 KFH69943
Arthrobacter sp. FB24 YP_830623.1
Synechococcus sp. JA-2-3B'a(2-13) YP_478336.1
Thalassiosira pseudonana CCMP1335 XP_002293997.1
Bacillus sp. 1NLA3E YP_007912296.1
Hippea alviniae WP_022671031.1
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9 6 / 1
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- /0 .75
86/0.99
9 2 / 1