the grid computing in vietnam and vngrid...

ISGC 2007, Acamedia Sinica, Taipei 1

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The Grid Computing in Vietnam andVNGrid Project

Tran Van Lang, Do Van LongMembers of VNGrid Project

HCM City Institute of Information Technology(IOIT-HCM)


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Outline

• Introduction

• Grid Computing in Vietnam

• IOIT-HCM BioGrid project

• VNGrid Project

• Conclusion


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Introduction

• Vietnamese Academy of Science andTechnology (VAST)

• Ho Chi Minh City Institute of InformationTechnology (IOIT-HCM)

http://www.ioit-hcm.ac.vn

IOIT-HCM DIRECTOR:Prof. TRAN VAN LANG


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Grid Computing in Vietnam• Some HPC centers were built

up and locate in separatingareas in our country:– In Hanoi:

• Centers for HPC of HanoiUniversity of Technology (2001)

• Hanoi College of NaturalSciences (2003)

• Vietnamese Institute ofMathematics (2004).

– In HCM city:• HCM City University of

Technology has established thesystem for high-performancecomputing (2004).


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Vietnam Grid Activities History

2003 2004 20052001-2002

Conference on HPCand Grid Computing,in HCM City, held byMinistry of Science

and Technology

The centers andsystems for HPC

were founded

IOIT-HCM GridProject

HCM City UTGrid Project

(6/2005)

BK GridGroup,

Hanoi UT

GridGroup ofHCM CityCollegeNatural

Sciences

BioGrid,IOIT-HCM

2006

IOIT-HCMjoin to

Pragma


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Grid Portal research– BK Grid Portal

(Hanoi UT)Studying on MultiAgent for discoveringthe resource of Gridsystem

– Grid iPortal(HCM UNS)Performing Blast andgene prediction in Gridcomputing environment

– Bio Grid Portal(HCM-IOIT)Bioinformatics tools for:multi alignment, motiffinding, blast, proteinprediction, Genemapping,…


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Other Grid applies

• Applying the HPC and GridComputing for climate forecast(Hanoi UT and Center forHPC, Hanoi UNS)

– Using MM5 model

• Simulating some biomedicalproblems (Hanoi Collegeof Technology)


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Other Grid applies (cont.)

• Access Grid for collaborationthe multimedia data(IOIT-HCM):

Support the Conference on ITand Communication inHaiphong, Vietnam (10/2005)


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• Connecting IOIT-HCM Gridwith PRAGMA (02/2006)


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Applications and Middleware in Pragma testhttp://goc.pragma-grid.net/applications/default.html

• Real science applications pair and drive middlewaredevelopment

• Achieve long-run and scientific results

• Open to applications of all scientific disciplines– Climate simulation

• Savannah/Nimrod (MU, Australia)• MM5/Mpich-Gx (CICESE, Mexico; KISTI, Korea)

– Quantum-mechanics, quantum-chemistry:• TDDFT, QM-MD, FMO/Ninf-G (AIST, Japan)

– Genomics• iGAP/Gfarm/CSF (UCSD, USA; AIST, Japan; JLU, China)• HPM: genomics (IOIT-HCM, Vietnam)• mpiBlast/Mpich-G2 (ASGC, Taiwan)

– Organic chemistry• Gamess-APBS/Nimrod (UZurich, Switzerland)

– Molecular simulation• Siesta/Nimrod (UZurich, Switzerland; MU, Australia)• Amber/Rsh ( USM, Malaysia)

– Computer Science• Load Balancer (IOIT-HCM, Vietnam)• GriddLeS (MU, Australia)

2 applications from Vietnam


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IOIT-HCM Grid Members


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IOIT-HCM BioGrid


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IOIT-HCM HiBio Tool


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Infrastructure of IOIT-HCM Grid System


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IOIT-HCM BioGrid Portal Technique

• IOIT-HCM BioGrid Portalbased on opensourcepackages:– GT 4 - Java CoG

– Jetspeed Portal

– Tomcat

– Jboss

– Postgresql

– Condor G

– GridPort4, OGCE


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Ethernet

Internet

203.162.99.118 203.162.99.116

biogrid.ioit-hcm.ac.vn bio.ioit-hcm.ac.vn

moon.ioit-hcm.ac.vn

Grid Portal Database

Compute Nodes

Ethernet

PBS

Ethernet

SGE

jupiter.gridcenter.or.kr

Ethernet Ethernet

venus.ioit-hcm.ac.vn

203.162.99.117 203.162.99.98

198.202.88.52

150.183.249.14

rocks-52.sdsc.edu

SGECondor Compute Nodes Compute Nodes

Compute Nodes


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IOIT-HCM Biogrid PortalFunctions Account and Authentication

GPIR - Grid Portals Information Repository

File Management

Job Submission

Job Sequence

GRAM Job

Condor Job Submission


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IOIT-HCM BioGrid Portaldemo

• Multi Bio applications run on IOIT-HCMBioGrid system

• Motif finding (programing in MPI-2) onIOIT-HCM Grid Portal system

• Multi alignment MPICH G2 on GridSystem console


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VNGrid Project

• To be financed by Ministry of Science andTechnology of Vietnam

• VNGrid Project Director:Assoc. Prof. Dr Vu Duc Thi - Director of IOIT

• Schedule for two years and will be finished onOctober 2008

• Budget: ~ 160,000 USD (2,5 Million VND)


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• Starting from five universitiesand institutes, collected to leadand execute this project:– Vietnamese Institute of

Information Technology (IOIT),

– Hanoi University of Technology(HaNoi UT)

– Vietnamese National Universityin Hanoi (VNU – Hanoi)

– Vietnamese Military TechnicalAcademy (VMTA)

– HCM City Institute of InformationTechnology (IOIT-HCM)


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The goals of VNGrid project

1. Building the Grid Computing system:– Be connected by five institutions

– Connecting to other Grid systems


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2. Studying to deploy the middlewares– Monitoring and discovering the resources of

the sites and whole of connected system

– Scheduling and broking using meta-schedulerand broker

– Studying for deploying a safety, security andauthentication solutions

(long term for this phase)


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3. To build the Grid-based Applications– Bioinformatics

– Meteorology

– Virtual Reality

– Cryptography

Other scientific applications on Grid system will becompiled

Creating the environment for collaborator andsharing resources. Make Grid easy to use.


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Conclusion• Grid Computing and e-Science are chance for developing

countries as Vietnam Using the bigger resources

• In our country, some Institutions have just begun forstudying Grid Computing Assembling them will forces to carry out the VNGrid project.

• To have to choose suitable solutions and applications The open source software could be used and developed inVNGrid system.


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Thank for your attention!

the grid computing in vietnam and vngrid...

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