the platforms for species distribution modelling in china · robert muscarella, peter j. galante,...
TRANSCRIPT
![Page 1: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P](https://reader036.vdocument.in/reader036/viewer/2022071114/5feb0c2221916d30f8708e69/html5/thumbnails/1.jpg)
The platforms for species distribution modelling in China
Huijie Qiao
Institute of Zoology, CAS
06/15/2017
![Page 2: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P](https://reader036.vdocument.in/reader036/viewer/2022071114/5feb0c2221916d30f8708e69/html5/thumbnails/2.jpg)
mMWeb An Online Platform for Employing Multiple
Ecological Niche Modeling Algorithms
![Page 3: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P](https://reader036.vdocument.in/reader036/viewer/2022071114/5feb0c2221916d30f8708e69/html5/thumbnails/3.jpg)
http://mmweb.animal.net.cn
![Page 4: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P](https://reader036.vdocument.in/reader036/viewer/2022071114/5feb0c2221916d30f8708e69/html5/thumbnails/4.jpg)
http://mmweb.animal.net.cn
![Page 5: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P](https://reader036.vdocument.in/reader036/viewer/2022071114/5feb0c2221916d30f8708e69/html5/thumbnails/5.jpg)
http://mmweb.animal.net.cn
![Page 6: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P](https://reader036.vdocument.in/reader036/viewer/2022071114/5feb0c2221916d30f8708e69/html5/thumbnails/6.jpg)
![Page 7: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P](https://reader036.vdocument.in/reader036/viewer/2022071114/5feb0c2221916d30f8708e69/html5/thumbnails/7.jpg)
![Page 8: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P](https://reader036.vdocument.in/reader036/viewer/2022071114/5feb0c2221916d30f8708e69/html5/thumbnails/8.jpg)
Learning curve
![Page 9: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P](https://reader036.vdocument.in/reader036/viewer/2022071114/5feb0c2221916d30f8708e69/html5/thumbnails/9.jpg)
![Page 10: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P](https://reader036.vdocument.in/reader036/viewer/2022071114/5feb0c2221916d30f8708e69/html5/thumbnails/10.jpg)
https://scienceasaverb.wordpress.com/2010/10/29/introduction-to-ecological-niche-modeling-environmental-niche-modeling-species-distribution-modeling-part-two-what-is-niche-modeling/
![Page 11: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P](https://reader036.vdocument.in/reader036/viewer/2022071114/5feb0c2221916d30f8708e69/html5/thumbnails/11.jpg)
https://scienceasaverb.wordpress.com/2010/10/29/introduction-to-ecological-niche-modeling-environmental-niche-modeling-species-distribution-modeling-part-two-what-is-niche-modeling/
Black box
![Page 12: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P](https://reader036.vdocument.in/reader036/viewer/2022071114/5feb0c2221916d30f8708e69/html5/thumbnails/12.jpg)
So…
• NicheA is a toy to play with the
data, rather than a ‘click-and-run’
software to ‘solve’ the problems.
![Page 13: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P](https://reader036.vdocument.in/reader036/viewer/2022071114/5feb0c2221916d30f8708e69/html5/thumbnails/13.jpg)
NicheA
![Page 14: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P](https://reader036.vdocument.in/reader036/viewer/2022071114/5feb0c2221916d30f8708e69/html5/thumbnails/14.jpg)
Background cloud
![Page 15: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P](https://reader036.vdocument.in/reader036/viewer/2022071114/5feb0c2221916d30f8708e69/html5/thumbnails/15.jpg)
Create an ellipsoid
![Page 16: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P](https://reader036.vdocument.in/reader036/viewer/2022071114/5feb0c2221916d30f8708e69/html5/thumbnails/16.jpg)
Design barriers in G space
G space
E space
![Page 17: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P](https://reader036.vdocument.in/reader036/viewer/2022071114/5feb0c2221916d30f8708e69/html5/thumbnails/17.jpg)
Export virtual to ENMs
Supported format: Maxent, Dismo, BIOMOD2, openModeller
![Page 18: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P](https://reader036.vdocument.in/reader036/viewer/2022071114/5feb0c2221916d30f8708e69/html5/thumbnails/18.jpg)
Show ENM result
![Page 19: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P](https://reader036.vdocument.in/reader036/viewer/2022071114/5feb0c2221916d30f8708e69/html5/thumbnails/19.jpg)
Functions in NicheA • Quantify niche overlap
• Principal Component Analysis
• Threshold calculator
• Variable normalization/standardization
• Calculate AUC value of partial-area
ROC approaches
• Calculate AIC/BIC value
• …