theteam5 abcc!€¦ · prinng: your,printer,might,not,print,the, same,way,our,printers,do,,so,...
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Prin%ng: Your printer might not print the same way our printers do, so make sure to try a couple of test prints. If things aren’t aligning quite right, experiment with the Scale to Fit Paper seCng. It’s located in the Print dialog – just click Full Page Slides to get to it.
And did you no%ce we made fold marks for you? They are really light, but if you don’t like them showing on your brochure, click View, Slide Master, and delete them before you print.
Customizing the Content: The placeholders in this brochure are formaNed for you. If you want to add or remove bullet points from text, just click the Bullets buNon on the Home tab.
If you need more placeholders for %tles, sub%tles or body text, just make a copy of what you need and drag it into place. PowerPoint’s Smart Guides will help you align it with everything else.
Want to use your own pictures instead of ours? No problem! Just click a picture, press the Delete key, then click the icon to add your picture.
If you replace a photo with your own and it’s not a flawless fit for the space, you can crop it to fit in almost no %me. Just select the picture and then, on the Picture tools Format tab, in the Size group, click Crop.
Imaging and Visualization Group
http://ncifrederick.cancer.gov/isp/abcc
[email protected] 301-846-7366
• 3D Biomedical Visualization
• Quantitative Image Analysis
• Information Visualization
• Image Archive
• Nano-‐Structural Support
IVG
u Works with NCI/FNLCR imaging facilities and investigators
u Gathers user requirement from
domain exports in imaging facilities
u Collaborates with external imaging communities
u Adopts new technologies in image analysis and visualization
u Performs technology development
u Builds workflows to increase image analysis throughput
u Develop and maintenances computing infrastructure for image analysis – including common software tool sets, thin clients, and servers
The Team ABCC
ISP, FNLCR
Advanced Biomedical Computing Center
Information Systems Program
Frederick National Laboratory for Cancer Research
Prin%ng: Your printer might not print the same way our printers do, so make sure to try a couple of test prints. If things aren’t aligning quite right, experiment with the Scale to Fit Paper seCng. It’s located in the Print dialog – just click Full Page Slides to get to it.
And did you no%ce we made fold marks for you? They are really light, but if you don’t like them showing on your brochure, click View, Slide Master, and delete them before you print.
Customizing the Content: The placeholders in this brochure are formaNed for you. If you want to add or remove bullet points from text, just click the Bullets buNon on the Home tab.
If you need more placeholders for %tles, sub%tles or body text, just make a copy of what you need and drag it into place. PowerPoint’s Smart Guides will help you align it with everything else.
Want to use your own pictures instead of ours? No problem! Just click a picture, press the Delete key, then click the icon to add your picture.
If you replace a photo with your own and it’s not a flawless fit for the space, you can crop it to fit in almost no %me. Just select the picture and then, on the Picture tools Format tab, in the Size group, click Crop.
Integrated Visualization, Analysis, and
Navigation(IVAaN)
Analyzing TCGA Meta-‐data
Information Visualization and Visual Analytics in Biomedical Research
IVG focuses on providing efficient collaborative open access to large-‐scale heterogeneous biomedical datasets. Utilizing Html 5, d3.js, and other web-‐based technologies, IVG develops web applications allowing users to browse, select, compare, and visualize biomedical data stored on remove server. Based on NoSQL database MongoDB, IVG develops workflows and web applications allowing user to save analysis process for future review and/or collaborative sharing with other colleagues. By continuously exploring new technologies, IVG is able to quickly prototype workflows and web applications in order to meet the evolving and changing biomedical data analysis needs.
In recent collaboration with the Optical Microscopy Analysis Laboratory, the IVG utilized developed IVAaN framework to convert a 35GB heterogeneous microscopy experiment dataset to an interactive web application for effective navigation, visualization and analysis.
The image above shows a snapshot of the dataset. The dataset includes approximately 74,000 files and folders, including images in different formats, spread sheets, text files, and other binary format data files. Manual navigation in such complex dataset is difficult due to the tedious file browsing and crowded display space showing data files in a traditional windows based way.
Snapshot of the 35GB dataset
Integrating NoSQL database MongoDB, d3.js JavaScript visualization library, and other open source software libraries and tools, the IVG created an interactive web application for quick data navigation, search, and multi-‐dimensional data analysis. Snapshot of the app is shown to the right.
Snapshot of the IVG developed web app
The hierarchical data set visualization and analysis workflow in the IVG IVAaN framework allows user to view ~8000 TCGA XML files in a tree structure. Users can select subset to create a keyword view and be able to see unique values connected to the selected keyword. Then a subset of XML files can be selected from the selected keyword-‐value pair for quick narrow down the scope for examination. User selections of XML files, keyword, and values can be saved for future view.
The IVG develops Integrated Visualization, Analysis, and Navigation (IVAaN) framework to provide support in information visualization and visual analytics for biomedical research.