this is a reminder of the illinois biophysics society-sponsored student seminar
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This is a reminder of the Illinois Biophysics Society-sponsored Student Seminar this evening, March 12th. The seminar will be held in the CLSL auditorium, room B102, beginning at 7:00pm. Food and drinks will be provided. Confinement in Filter. Selection occurs in most constrained region. - PowerPoint PPT PresentationTRANSCRIPT
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This is a reminder of the Illinois Biophysics Society-sponsored Student Seminar
this evening, March 12th.
The seminar will be held in the CLSL auditorium, room B102, beginning at 7:00pm.
Food and drinks will be provided.
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0
0.05
0.1
0.15
0.2
0.25
0.3
0.35
0.4
-10 -7. -5 -2. 0 2.5 5 7.5 10 12. 15
Confinement in Filter• Selection occurs in most constrained region.
• Caused by the locking mechanism.
RM
S m
otio
n in
x a
nd
y
z (Å)
Filterregion
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Observed Induced Fit in Filter
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-0.6
-0.4
-0.2
0
0.2
0.4
0.6
-10 -7 -4 -1 2 5 8 11 14
Dipole Reversal in Channel• Dipole reversal pattern matches water.
• Selects large molecules with flexible dipole.
cos(
dip
ole
angl
e w
ith
z)
z (Å)
Dipolereversalregion
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Electrostatic Stabilization of Water Bipolar Arrangement
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K+ channel
Cl- channel
Aquaporins
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H+H
H
O H
H
O H
H
O
H
H
O H
H
O H
H
OH+H+
H+
H+H+
H+
H+
H+H+H+
H+
H
H
O H
H
O H
H
O
H+
H+H+
Proton transfer through water
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Mechanism of proton Preclusion in Aquaglyceroporins
E. Tajkhorshid, P. Nollert, M. Jensen, R. Stroud, K. Schulten, Science (submitted)
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Gramicidin A – forming a membrane leak
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Gramicidin can form a proton wire
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carbohydrate
440 nm
scattered light
H2O carbohydrate + H2O
lipid vesicles
channel-containing proteoliposomes
shrinking reswelling
100 mM Ribitol
Liposome Swelling Assay
Courtesy of Peter Nollert
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membrane
membrane
membrane
water
water
Pressure Induced Water Conduction in GlpFRealizing a pressure difference in a periodic system
is the force on each water molecule, for n water molecules
P1 = P2 + Pwater P = nf/A
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Pressure Induced Water Conduction in GlpF
RTPPj
CRTP
Cpj
f
f
/
C: Solute concentration difference
j: water flux through a single channel
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Calculation of osmotic permeability of water
channels
pf: 7.0 ± 0.9 10-14 cm3/sExp: 5.4 – 11.7 10-14 cm3/s
pf: 1.410-13 cm3/s
GlpF Aquaporin-1
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Na+
K+
++ ++
++
++
-- --
--
--
Membrane electrical potential
-60 mVK+
Na+
The ratio is about 1 to 10 Action potential in excitable cells
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Properties of Ion Channels
Membrane-spanning proteinHydrophilic ion conductive pathway
Water-filledTraversing ion must lose hydration shell
Selectivecharge screening and size
Gating propertiesExist in open and closed states
Substrate is charged and the conduction can be measured very precisely, as opposed to water channels
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Control of conduction in ion channelsGating mechanisms (open-closed transition)
Membrane potential change (Voltage gated channels)
K channels
Binding of a molecule (Ligand-gated channels)Acetylcholine nicotinic receptor (Na
channel)Glutamate receptor (Ca channel)
Both voltage and ligand gating
Mechanosensitive channels
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Ubiquitous Mechanosensitive Channels
Osmotic downshock
H20H20
Membrane tension increases
MscL is a bacterial safety valve
hearing
touch
gravity
balance
cardiovascular regulation
Roles in Higher Organisms
Bacterial MscL is functional in reconstituted lipid bilayers.
Most eukaryotic MS channels require coupling to the cytoskeleton and/or the extracellular matrix.
MscL gating+ excretion
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Gating Mechanism of a Mechanosensitive Channel
Full helical transmembrane proteinsSensitive to bilayer thickness Sensitive to bilayer tensionNon-specific channels
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MscL gates by tilting its helices
Mechanosensitive Ion Channel
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• Homology model of MscL from E. coli
• Constant radial force applied to residues at the ends of M1 and M2.
• 10 ns simulation time.
Green: M1Blue: M2
S1
SMD simulation of MscL
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Gly63,Arg58
Val21
Phe5
Channel axis coordinate
radi
us
Helix Tilt During Stretching
• 10-frame average of coordinates at 10, 1000, 1500, and 2000 ps
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MscL Expanded State
• 0-2 ns: expansion of the periplasmic ends of M1 and M2.
• 2-6 ns: slippage of conserved Ala20 past Ile25 and Phe29.
• 6-10 ns: continued expansion; stretching of linker residues.
Doublemovie.mpg
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• Well-conserved Gly22 and Gly26 mediate packing between neighboring M1 helices.
• Gly22 contacts are abolished at the onset of pore opening.
• Gly26 formed new contacts with Val16, but even these were abolished with continued pore expansion.
M1 Helix-helix Contacts
Gly22.mpg
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KcsA Potassium Channel
Under physiological conditions, the selectivity filter of the KcsA dehydrates, transfers, and rehydrates a K+ ion every 10ns.
PDB Feb 2003 molecule of the month
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KcsA Potassium Channel
Extracellular half is responsible for selectivity
Cytoplasmic half is responsible for gating, through lining of inner helices
Central cavity12A
4AHydrophobic
The program HOLE is used for calculating the radii
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K binding sites in the selectivity filter
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Central cavity