this year’s nobel prizes in physics and chemistry tie in nicely to the subjects of our course,...

43
This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates how a chemist’s use of localized bonds, vacant atomic orbitals, and unshared pairs to understand molecules compares with views based on the molecule’s actual total electron density, and with computational molecular orbitals. The localized view is then used to help understand reactivity in terms of the overlap of singly-occupied molecular orbitals (SOMOs) and, more commonly, of an unusually high-energy highest occupied molecular orbital (HOMO) with an unusually low-energy lowest unoccupied molecular orbital (LUMO). This generalizes the traditional concepts of acid and base. Criteria for assessing reactivity are outlined and illustrated. Chemistry 125: Lecture 15 October 6, 2010 Chemical Reactivity: SOMO, HOMO, and LUMO For copyright notice see final page of this file

Upload: kevin-barnett

Post on 19-Jan-2016

213 views

Category:

Documents


0 download

TRANSCRIPT

Page 1: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including

today’s lecture. Examining the BH3 molecule illustrates how a chemist’s use of localized bonds, vacant

atomic orbitals, and unshared pairs to understand molecules compares with views based on the

molecule’s actual total electron density, and with computational molecular orbitals. The localized view is

then used to help understand reactivity in terms of the overlap of singly-occupied molecular orbitals

(SOMOs) and, more commonly, of an unusually high-energy highest occupied molecular orbital (HOMO)

with an unusually low-energy lowest unoccupied molecular orbital (LUMO). This generalizes the traditional

concepts of acid and base. Criteria for assessing reactivity are outlined and illustrated.

Chemistry 125: Lecture 15October 6, 2010

Chemical Reactivity: SOMO, HOMO, and LUMO

For copyright notice see final page of this file

Page 2: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

Graphene’s unique MO structure gives it unique electrical and optical properties, stability, strength, and “resonance”.

Page 3: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

Levitator by Martin Simon (UCLA)

Eppur sta fermo“and yet it stands still”

Graphene

Andre Geim’s Hand (1999)

Page 4: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

Levitator by Martin Simon (UCLA)

“and yet it stands still”

Andre Geim’s Frog (1999)

Page 5: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

http://nobelprize.org/nobel_prizes/chemistry/laureates/2010/

Page 6: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

Three Views of BH3

2) Molecular Orbitals

1) Total Electron Density

3) Bonds from Hybrid AOs

(Nature)

(Computer)

(Chemist)Cf. Course Webpage

Page 7: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

How BH3 Sees Itself:The Electron Cloud of

via "Spartan”STO 6-31G**

B

H

HH

Page 8: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

B

H

HH

BH3

Total e-Density0.30 e/ao

3

Mostly1s Core

of Boron

Page 9: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

BH3

Total e-Density0.15 e/ao

3

Page 10: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

BH3

Total e-Density 0.05 e/ao

3

Dimple

H atoms take e-densityfrom valence orbitals of B

BH+••H •

B•

Page 11: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

BH3

Total e-Density0.02 e/ao

3

Page 12: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

BH3

Total e-Density0.002 e/ao

3

van der Waalssurface

(definition)

Page 13: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

BH3

Total e-Density0.002 e/ao

3

HIGH(+ 55 kcal/mole)

LOW(-7.5 kcal/mole)

ElectrostaticPotentialEnergy of a+ probe onthe surface

H

low (-) high (+)

Page 14: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

2) Molecular Orbitals

1) Total Electron Density

3) Bonds from Hybrid AOs

(Nature)

(Computer)

(Chemist)Cf. Course Webpage

Three Views of BH3

Page 15: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

Computer PartitionsTotal e-Density

intoDelocalized MOs

.

(à la Chladni or Plum Pudding)

Page 16: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

BH3

8 low-energy AOs 8 low-energy MOs

B : 1s , 2s , 2px , 2py , 2pz

3 H : 1s

“Minimal.. Basis Set”

of AOs

MOLECULAR ORBITALS

Page 17: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

noccupied

BH3

8 electrons / 4 pairs

B : 5 electrons3 H : 3 1 electron

••••

••

••

OMOs

UMOs

LUMO

HOMO(s) •• ••

ccupied

ighest

owest

MOLECULAR ORBITALS

Page 18: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

1s

••••

••

••

1s ••Boron Core

MOLECULAR ORBITALS

Cf. website

Page 19: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

2s ••••

••

••

Radial Node

MOLECULAR ORBITALS

Cf. website

Page 20: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

2px ••••

••

••

MOLECULAR ORBITALS

Cf. website

Page 21: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

2py••

••

••

••

MOLECULAR ORBITALS

Cf. website

Page 22: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

2pz

••••

••

••

MOLECULAR ORBITALS

Cf. website

Page 23: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

3s

••••

••

••

MOLECULAR ORBITALS

Cf. website

Page 24: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

3dx2-y2

••••

••

••

MOLECULAR ORBITALS

Cf. website

Page 25: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

3dxy

••••

••

••

MOLECULAR ORBITALS

Cf. website

Page 26: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

2) Molecular Orbitals

1) Total Electron Density

3) Bonds from Hybrid AOs

(Nature)

(Computer)

(Chemist)Cf. Course Webpage

Three Views of BH3

Page 27: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

We Partitionthe same

Total e-Densityinto Atom-Pair Bonds

(and anti-bonds)

& Isolated AOs(lone pairs / vacant atomic orbitals)

(à la Lewis)

usually

When this

doesn't work,and we must

use moresophisticatedorbitals, wesay there is

RESONANCE

Page 28: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

2pz

••

••

••

••

For Many Purposes Localized Bond Orbitals are Not Bad

Boron Core

And they are easier to think about; but beware of resonance.

••BH

H

B ••

H

B ••

Same Total Energyas computer!

HB

Same Totale-Density

also!

BH

HB

(and of properties of individual electrons)

Page 29: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

The Localized Bond Orbital Picture(Pairwise Bond Orbitals and Isolated AOs)

is our intermediate betweenH-like AOs and Computer MOs

When must we think more deeply?

When we care about individual electrons(ionization ; visible/uv absorption)

When mixing of localized orbitals causes

Reactivity ………….. or Resonance

Page 30: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

Where are We?

MoleculesPlum-Pudding Molecules ("United Atom" Limit)

Understanding Bonds (Pairwise LCAO)"Energy-Match & Overlap"

Structure (and Dynamics) of XH3 MoleculesParsing Electron Density

Atoms3-Dimensional Reality (H-like Atoms)

HybridizationOrbitals for Many-Electron Atoms (Wrong!)Recovering from the Orbital Approximation

Recognizing Functional Groups

Payoff forOrganic

Chemistry!

ReactivitySOMOs, high HOMOs, and low LUMOs

Page 31: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

Which MOMixings Matter

forReactivity?

••

••

••

••

etc.

••

••

••

etc.

UMOs

OMOsOMOs

B A

UMOs

Myr

iad

Pos

sibl

e P

airw

ise

Mix

ings

molecule molecule

Page 32: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

Which MOMixings Matter

forReactivity?

••

••

••

••

etc.

••

••

••

etc.

UMOs

OMOsOMOs

••SOMO

SOMO••

B ASOMO-SOMO(when they exist)

UMOs

many atoms"free radicals"

e.g. •H •Cl •CH3

ingly

molecule molecule

(in order to survive must be kept from overlapping

not very common)

Page 33: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

Which MOMixings Matter

forReactivity?

••

••

••

••

etc.

UMOs

••

••

••

etc.

UMOs

OMOsOMOs

••

••

B A

Nothing

4e-

Weak NetRepulsion

••

molecule molecule

(balances correlation atvan der Waals contact)

Negligible Mixing &

Stabilization because of Bad

E-match

Page 34: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

Which MOMixings Matter

forReactivity?

••

••

••

••

etc.

UMOs

••

••

••

etc.

UMOs

OMOsOMOs

B ABonding!

Unusually High

HOMOwith

Unusually Low

LUMO

••

molecule molecule

••

Negligible Mixing &

Stabilization because of Bad

E-match

Page 35: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

Which MOMixings Matter

forReactivity?

••

••

••

••

etc.

UMOs

••

••

••

etc.

UMOs

OMOsOMOs

B A••

Bonding!

Unusually High

HOMOwith

Unusually Low

LUMO

BASE

ACID

molecule molecule

or in common parlance

Page 36: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

Most mixing of MOs affects neither overall energy nor

overall electron distribution for one (or more) of these reasons:

1) Electron occupancy 4 or 0

2) Poor energy match

3) Poor overlap BUT

Page 37: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

Mixing of High HOMO

& Low LUMOconstitutes

Reactivity

Page 38: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

Acid-Base TheoriesTHEORY ACID BASE

Lavoisier(1789)

OxidizedSubstance

Substance tobe Oxidized

Arrhenius(1887)

H+ Source OH- Source

Incr

easi

ng G

ener

ality

Brønsted/Lowry(1923)

H+ Donor H+ Acceptor

Lewis(1923)

e-Pair Acceptor"Electrophile"

e-Pair Donor"Nucleophile"

HOMO/LUMO(1960s)

unusually

High HOMOunusually

Low LUMO

Page 39: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

••

sp3C 1sH

Unusual:

••

"usual"LUMO

"usual"HOMO

I. Unmixed Valence-Shell AOs

III. Unusual AO Energy in MO

Sources of weirdness:

IV. Electric Charge

II. Poor Overlap of AOs

Compared to What?*CH

CH

(or *CC )

(or CC )

Page 40: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

I. Unmixed Valence-ShellAtomic Orbitals

••

*CH

CH

••

sp3C 1sH

BH3

low LUMO

••

CH3

high HOMO

••

NH3

high HOMO

"usual"LUMO

"usual"HOMO

••

OH2

high HOMO

••

OHhigh HOMO

(or *CC )

(or CC )

H+

low “LUMO”

(energies qualitative only)

(Also IV: Electrical Charge)

Page 41: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

Acid-Base Reactions

H+ OH H-OH

H+ :NH3

H3B OH

H3B :NH3

H-NH3+

H3B-NH3+

Curved Arrows Designate e-Pair Shifts.

Start arrow at e-pair location in starting material.

End arrow at e-pair location in product.

(NOT atomic motion)H3B-OH

tetravalent N is +

tetravalent B is -

Page 42: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

II. Poor-Overlap MOs

••

*C=O

C=O

pC

pO

••

*CH

CH

••

sp3C 1sH

••

*C=C

C=C

••

pC pC

high HOMO

low LUMO"usual"LUMO

"usual"HOMO

Bent

(energies qualitative only)

Page 43: This year’s Nobel Prizes in Physics and Chemistry tie in nicely to the subjects of our course, including today’s lecture. Examining the BH 3 molecule illustrates

End of Lecture 15Oct. 6, 2010

Copyright © J. M. McBride 2009, 2010. Some rights reserved. Except for cited third-party materials, and those used by visiting speakers, all content is licensed under a Creative Commons License (Attribution-NonCommercial-ShareAlike 3.0).

Use of this content constitutes your acceptance of the noted license and the terms and conditions of use.

Materials from Wikimedia Commons are denoted by the symbol .

Third party materials may be subject to additional intellectual property notices, information, or restrictions. 

The following attribution may be used when reusing material that is not identified as third-party content: J. M. McBride, Chem 125. License: Creative Commons BY-NC-SA 3.0