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S.R.M INSTITUTE OF SCIENCE AND TECHNOLOGY (DEEMED UNIVERSITY) S.R.M. ENGINEERING COLLEGE DEPARTMENT OF B.TECH BIOINFORMATICS BATCH 2004 - 2005 CURRICULUM st I Year 1 Semester SUB CODE SUBJECT NAME L

T 1 0 0 0 0 0 0 0 0 0 1 T 1 1 0 0 0 0 0 0 0 2 T 1 0 1 1 1 0 0 0 4 T 1 1 0 0 1 0 0

P 0 0 0 0 0 0 2 2 3 3 10 P 0 0 2 0 0 0 0 4 3 9 P 0 0 0 0 0 0 3 4 7 P 0 0 0 2 0 0 0

C 4 3 3 3 4 4 1 1 2 2 27 C 4 4 4 3 3 2 1 3 2 26 C 4 3 4 4 4 2 2 2 25 C 4 4 3 4 4 3 2

TheoryMA 111 LE 101 PH 101 CY 101 GE 101 GE 103 PH 103 CY 103 GE 105 ME 101nd

Mathematics-I for Biotechnologists English-I Physics-I Chemistry-I Basic Engineering-I Basic Engineering-II PRACTICALS Physics Laboratory Chemistry Laboratory Computer Practice Workshop Practice Total

3 3 3 3 4 4 0 0 0 0 20 L 3 3 3 3 3 2 1 1 0 19 L 3 3 3 3 3 2 0 0 17 L 3 3 3 3 3 3 2

I Year 2 Semester SUB CODE SUBJECT NAME Theory MA 142 Mathematics-II CY 152 Chemistry-II CS 156 Computer Programming (C&C++) BT 102 Biochemistry BT 104 Microbiology GE 108 Biology (Common for all branches) GE 106 Value Education PRACTICALS GE 104 Engineering Drawing CY 156 Chemistry Laboratory II Year 3 Semester SUB CODE SUBJECT NAME Theory BI 201 Molecular Biology & Genetics BI 203 Biophysics BI 205 Bioinformatics BI 207 Introduction to Data Structures BI 209 Java Programming LE201/203 Language(Phase-I) PRACTICALS BI211 Java Programming Laboratory BI213 Basic Biotechnology Laboratory Total th II Year 4 Semester SUB CODE SUBJECT NAME Theory MA 262 Biostatistics For Bioinformatics BI 202 Biological Databases and Gene Sequencing BI 204 Genomics BI 206 Bioinformatics Algorithms BI 208 Introduction to Database Management Systems BI 210 PERL Programming LE 202/204 Language (Phase-II)rd

Total

PRACTICALS BI 212 BI 214th

PERL Programming Laboratory Biocomputing Laboratory - I Total

0 0 20 L 3 3 3 3 3 3 0 0 0 18 L 3 3 3 3 3 0 3 0 0 18 L 3 3 3 3 3 3 0 0 18 L 3 3 3 0 1 10

0 0 3 T 0 1 0 1 0 0 0 0 0 2 T 0 1 1 1 0 0 0 0 0 3 T 1 1 0 0 0 0 0 0 2 T 0 0 0 0 0 0

3 3 8 P 0 0 0 0 0 0 1 3 3 7 P 0 0 0 0 0 1 0 3 3 7 P 0 0 0 0 0 0 3 6 9 P 0 0 0 16 0 16

2 2 28 C 3 4 3 4 3 3 1 2 2 25 C 3 4 4 4 3 1 3 2 2 26 C 4 4 3 3 3 3 2 3 25 C 3 3 3 8 1 18

3rd Year 5 Semester SUB CODE SUBJECT NAME Theory BI301 Proteomics and Transcriptomics BI303 Internet programming BI305 Data mining and Data Warehousing BI307 Molecular Phylogeny and Evolution BI309 Medical Informatics BI311 Structural biology GE301 Personality Development I Practical BT311 Genetic Engineering Laboratory BI315 Internet Programming Laboratory Total th 3rd Year 6 Semester SUB CODE Theory BI300 BI302 BI304 BI306 BI308 GE302 Practical BT208 BI310th

SUBJECT NAME Metabolomics and Metabolic Engineering Chemoinformatics Molecular Mechanics Computational Neuroscience Computer Aided Drug Designing Personality Development II Elective I Immunology laboratory Drug designing laboratory Total SUBJECT NAME Genetic Algorithm Molecular Dynamics Pharmacogenomics and Pharmacogenetics Immunoinformatics Elective II Elective III Biocomputing Laboratory II Mini Project Total SUBJECT NAME Total Quality Management Elective IV Elective V Project Comprehension Total

4th Year 7 Semester SUB CODE Theory BI401 BI403 BI405 BI407

Practical BI409 BI411 8 Semester SUB CODE Theory BI400th

Practical BI402 BI404

Total credits to be earned for the award of the degree: 200

Group I Electives SUB CODE SUBJECT NAME BI350 Image Processing BI352 Genetic Engineering BI354 Artificial Intelligence BI356 Immunology BI358 Neural Networks Group II Electives SUB CODE SUBJECT NAME BI450 Microarray Technique and applications BI452 Protein engineering BI454 Bioconfinement of Genetically Modified Organisms BI456 Bioprocess Principles BI458 Biodiversity and Management for Biotechnology Group III Electives SUB CODE SUBJECT NAME BI451 Pattern Recognition Techniques BI453 Fuzzy logic BI455 Computer Graphics BI457 Advanced Java Programming BI459 3D modeling & Animation Group IV Electives SUB CODE SUBJECT NAME BI460 Management for Information Technology BI462 Nanobiotechnology BI464 Biopython BI466 Microbial genomics BI468 Systems biology Group V Electives SUBJECT NAME SUB CODE BI461 Simulation and Modelling BI463 Microfluidics BI465 Evolutionary Computing BI467 Plant genomics BI469 Natural Language Processing

L 3 3 3 3 3

T 0 0 0 0 0

P 0 0 0 0 0

C 3 3 3 3 3

L 3 3 2 3 3

T 0 0 0 0 0

P 0 0 2 0 0

C 3 3 3 3 3

L 3 3 3 3 3

T 0 0 0 0 0

P 0 0 0 0 0

C 3 3 3 3 3

L 3 3 3 3 3

T 0 0 0 0 0

P 0 0 0 0 0

C 3 3 3 3 3

L 3 3 3 2 3

T 0 0 0 0 0

P 0 0 0 0 0

C 3 3 3 3 3

Course All Theory And Practical Courses Project Work Comprehension Seminar

SCHEME OF EXAMINATION Duration In Internal External Total Hours Marks Marks 3 hrs. 30 70 100 100 50 100 100 50 -200 100 100

Passing Minimum External Aggregate 35 50 50 25 -100 50 --

I SEMESTER LE101 ENGLISH L 3 T 0 P 0 C 3

PURPOSE To provide an adequate mastery of technical and communicative English Language training primarily, reading and writing skills, secondarily listening and speaking skills. INSTRUCTIONAL OBJECTIVES To provide language training to the engineering students which will enable them to understand and acquire knowledge in technical subjects. UNIT I LISTENING 1. Listening Comprehension Listening Practice Hints on Practice Questions 2. Note Taking Note Taking Strategies 5

Listening

UNIT II SPEAKING 7 Expressing Opinions (agreement / disagreement) Offering Suggestions Technical Definition - Defining Describing Objects - Exercise Audio equipment : Types of Pronunciation Word stress / social context, science and technology context-sentence stress and intonation. UNIT III READING 7 Skimming Scanning -close reading Reading Comprehension Transferring Information - Exercise An unseen passage should be given and questions may be asked in the form of True or False statements, MCQ, short answers. Transcoding : Interpreting tables, flow charts UNIT IV WRITING 12 Grammar Parts of Speech(advanced) prefixes and suffixes Preposition + relative Tense forms Active and Passive voice Abbreviations punctuation - Exercise Technical Report Writing Lab Report - Exercise Art of Writing Written Language Rules for effective writing Technical Essay Writing Exercise Letter Writing Formal Letters Letter to a News paper Letter Inviting Dignitaries Letter of Application Placing an Order Curriculum Vitae Invitation Exercise Note Making Strategies Organising Notes - Exercise UNIT V FOCUS ON AND COMMUNICATION AND COMPUNICATION 9 a) Communication Basic Concepts Process Kinds Routes Forms Factors Barriers Triangles Communication (Communicate through Computers Power Point & Tele Conferencing). b) Dialogue Writing How to write a dialogue - Enact dialogues between two or three people c) Mini Project Report Writing Mini Project may submitted during course work Example Topics like Internet Role of Language Communication Technology English Literature etc. INTERNAL ASSESSMENT 5 Assignment and Mini Project Report Writing Mini Project may be submitted during course work. Based on the test performance and project report of the students marks may be awarded. TOTAL 45 TEXT BOOKS Abraham Benjamin Samuel Practical Communication (Communicative English), LSRW2000, SRMEC - June 2002 REFERENCE BOOKS Herbert. A.J. The structures of Technical English Orient Longman 1995. Pickett and Laster, echnical English, Writing, Reading and Speaking, New Harper and Row Publications, 1997.

York

Swan, Michael, Basic English Usage, Oxford University Press, 1984. Interactive course in phonetics and spoken English published by Acoustics Engineers(ACEN) 2002. Warner, Tony, Communication Skills for Information Systems, Pitman Publishing, London, 1996. Munter, Mary, Business Communication Strategy and Skill, Prentice Hall Inc., New Jersey, 1987. Day Robert.A. 1983, How to Write and Publish a Scientific Paper Vikas Publishing House Pvt Ltd, New Delhi,1979. Staff of the Department of Humanities and Social Sciences, Anna University, English for Engineers and Technologist Vol. I. Orient Longman, 1990. MA111 MATHEMATICS I (Common for BT, BI & GN Branches) L 3 T 1 P 0 C 4

UNIT I MATRICES 9 *Review of determinants, its properties and applications. Rank of a Matrix Consistency and Inconsistency of a system of m linear equations in n unknowns Eigen values and Eigen vectors Cayley-Hamilton theorem Diagonalisation Orthogonal Reduction of Quadratic forms to Canonical forms. UNIT II - TRIGONOMETRY 9 *Review of complex numbers De Moivres theorem and its applications Expansion of sin n, cos n in terms of sin and cos . Expansion of tan n in terms of tan . n n Expansions of sin and cos in terms of sines and cosines of multiples of . Hyperbolic functions and inverse hyperbolic functions. Separation into real and imaginary parts of complex functions. UNIT III - GEOMETRICAL APPLICATIONS OF DIFFERENTIAL CALCULUS 9 *Review of Limits, Continuity, Differentiation and Derivatives of simple functions Curvature Cartesian and polar coordinates Circle of Curvature - Involutes and Evolutes Envelopes. UNIT IV - INTEGRAL CALCULUS 9 *Review of types of integration ax n n n n m Properties of definite integrals Reduction formulae: e x , sin x, cos x, sin x cos x (without proof) Double integrals - Double integrals in polar coordinates Change of order Area as a Double integral Triple integrals. UNIT V - BETA AND GAMMA FUNCTIONS 9 Definition of Beta, Gamma integrals Relation between them Properties Evaluation of Definite integrals in terms of Beta and Gamma functions-Simple applications. TUTORIAL 15 TOTAL 60