tm e. aerogenes 11 11 11 9 9 12 , a novel … · laboratoire de microbiologie cliniques...
TRANSCRIPT
Objective:
To evaluate the performance of Brilliance ESBL® (OX; Oxoid) selective chromogenic agar
for the detection and the presumptive identification of extended-spectrum beta-
lactamases (ESBL)-producing Enterobacteriaceae (EB).
Methods:
In a preliminary study, we challenged a collection of 200 Gram-negative bacterial
including 156 EB strains with well-defined resistance mechanisms against OX and ChromID
ESBL® (BM; bioMérieux) chromogenic agar to evaluate the growth selectivity and the
chromogenic features of the media. In a second part, 528 clinical samples (including 344
fecal specimens) obtained from 424 ambulatory and hospitalized patients were plated
onto OX, BM and MacConkey agar to which a disk of ceftazidime was added (MCC) for the
screening of ESBL-producing EB. All colonies growing on any of the three media after full
24-hour incubation were identified and tested for susceptibility by Phoenix System
(Becton-Dickinson). ESBL confirmation was performed by combination disks method.
Characterization of resistance mechanisms was determined by PCR of TEM, SHV, CTX-M,
OXA, and AmpC genes with amplicon sequencing.
Results:
Of the 156 EB isolates from the collection isolates, all 98 ESBL producers were detected
but 50 strains harbouring various non-ESBL resistance mechanisms were also recovered on
both OX and BM; 8 fully susceptible isolates did not grow on any of the two selective
media. Of the 528 clinical samples screened, 144 (27%) yielded growth on at least one of
the three media. A total of 182 isolates including 109 (60%) EB were recovered and 70 of
these (from 59 specimens) were confirmed as ESBL-producing isolates. The sensitivities
were 74.6%, 94.9% and 94.9% for MCC, BM and OX respectively. The specificities
calculated for the ESBL-negative samples reached 94.9%, 95.5% and 95.7% for MCC, BM
and OX respectively when only chromogenic enterobacterial colonies were considered on
the two chromogenic media.
Conclusions:
OX and BM yielded comparable performances and had a higher sensitivity than MCC for
the detection of ESBL-producing EB from clinical specimens. The high negative predictive
value (99.3%) found for OX suggested that this medium could represent an excellent
screening tool for rapid exclusion of carriage of ESBL producers. The selection of
enterobacterial isolates only for ESBL confirmation based on chromogenic features could
limit the unnecessary workout.
Revised abstract
Evaluation of Brilliance ESBLTM, a Novel Chromogenic Agar for the Detection
of Extended-Spectrum Beta-Lactamases Producing Enterobacteriaceae
Huang T-D,1,2 Bogaerts P,2 Berhin C,2 Guisset A,2 Glupczynski Y2
Conclusions
Introduction
References
1 Laboratory of Microbiology, Cliniques Universitaires U.C.L. St-Luc, Brussels, Belgium2 Laboratory of Microbiology, Cliniques Universitaires U.C.L. Mont-Godinne, Yvoir, Belgium
Mailing address:
T-D Daniel Huang
Laboratoire de Microbiologie
Cliniques Universitaires Mont-Godinne UCL
5530 Yvoir, Belgium
E-mail: [email protected]
Poster
P638
Methods (challenge strains)
Results (clinical samples)
Results
Results (challenge strains)
The spread of ESBLs in Gram-negative bacteria represents a
major therapeutic challenge either in hospitals or in a community
setting (1).
The use of surveillance cultures or of targeted screening for
ESBL producers in high-risk patients or units (e.g. in intensive care
units) has been advocated to prevent or to control outbreaks of
nosocomial infections caused by these organisms (2, 3).
In this study, we aimed to evaluate the performance of the
prototype chromogenic selective medium Brilliance™ ESBL (OX;
Oxoid, Basingstoke, United Kingdom) as compared to another
commercialized medium, (ChromID ESBL agar (BM); bioMérieux,
Marcy l’Etoile, France), which had been assessed in a previous
validation study (4), for their ability to detect and presumptively
identify ESBL-producing Enterobacteriaceae. The study was split
into two phases: testing a challenge collection (first part) and
direct inoculation of clinical samples (second part).
Methods (clinical samples)
The challenge set of 200 Gram negative isolates selected based on the
diversity of their resistance mechanisms from the collection of clinical
bacterial isolates of the bacteriology laboratory of the Cliniques UCL de
Mont-Godinne were tested for their ability to grow on the two
chromogenic media.
All strains were thawed from -70°C and subculture isolates were
suspended in saline than homogenized to a density of 0.5 McFarland. A
10-µl inoculum of this suspension was inoculated onto selective
chromogenic agars (OX and BM), and on MacConkey plates (MC; Oxoid)
used as growth controls. All plates were incubated at 35°C in ambient
air atmosphere for 24 h before reading.
The study was performed at the Cliniques Universitaires St-Luc in
Brussels from February 2009 to April 2009. A total of 528 samples obtained
from 424 patients (25% ambulatory and 75% hospitalized) were processed
and screened, including 344 fecal samples, 134 respiratory tract samples
and 50 samples of miscellaneous origins.
Each specimen was homogenized in 1 ml sterile saline and 50 µl of this
suspension was inoculated onto OX, BM and on MC to which a 30 μg
ceftazidime tablet was placed (MCC). All plates were incubated at 35°C in
ambient air atmosphere for a full 24 h before reading.
All colonies developing on one of the two chromogenic media or within
a 20-mm inhibition zone diameter of the ceftazidime disk on MCC
(referred as isolates growing on the media MCC) were subcultured. Gram-
negative isolates were identified and tested for susceptibility using
Phoenix panels (Becton-Dickinson). The presence of an ESBL was
confirmed by double combination disc test using ceftazidime (30 µg) and
cefotaxime (30 µg) alone or in association with clavulanic acid (10 µg).
All Enterobacteriaceae isolates and non-fermenting Gram-negative
isolates showing resistance patterns compatible with acquired resistance
mechanisms to -lactam antimicrobials were referred to the bacteriology
laboratory of Mont-Godinne hospital for molecular characterization
including PCR detection of ESBLs, oxacillinases or carbapenemases.
An isolate was categorized as ESBL positive when the ESBL phenotype
displayed with the double disk test was confirmed by genotypic
characterization with the multiplex PCR.
BM OX
E. coli 45 45 45
K. pneumoniae 22 22 22
E. aerogenes 20 20 20
E. cloacae 5 5 5
C. freundii 3 3 3
K. oxytoca 3 3 3
Carbapenemase K. pneumoniae 2 2 2
E. coli 9 9 12
E. aerogenes 11 11 11
C. freundii 6 5 6
M. morganii 2 3 3
K. pneumoniae 2 2 2
K1-OXY penicillinase K. oxytoca 8 8 8
OXA-1/-30 penicillinase E. coli 3 3 6
E. coli 0 0 4
K. pneumoniae 0 0 2
E. aerogenes 0 0 1
K. oxytoca 0 0 1
P. aeruginosa 5 5 5
A. baumannii 1 1 1
P. aeruginosa 4 4 4
A. baumannii 4 4 4
P. aeruginosa 9 8 9
A. baumannii 2 2 2
Intrinsic resistance S. maltophilia 13 2 15
P. aeruginosa 3 3 3
A. baumannii 1 0 1
Enterobacteria
ESBL
AmpC cephalosporinase
Susceptible (Wild-type)
Number of
isolates
tested:Group Resistance mechanism Species
Number of isolates
growing on:
Non fermenters
ESBL
Acquired carbapenemase
Chromosomal cephalosporinase
and/or impermeability
Susceptible (Wild-type)
MCC BM OX All media
E. coli 36 (32) 52 (45) 54 (47) 62 (50)
E. cloacae 10 (5) 10 (4) 9 (4) 11 (5)
K. pneumoniae 7 (6) 8 (7) 7 (7) 9 (7)
E. aerogenes 7 (3) 7 (3) 6 (3) 7 (3)
K. oxytoca 0 5 3 5
M. morganii 3 (1) 2 (1) 5 (1) 5 (1)
C. freundii 3 (1) 3 (2) 3 (1) 4 (2)
S. marcescens 0 1 (1) 2 (2) 2 (2)
C. farmeri 0 2 2 2
H. alvei 0 2 0 2
P. aeruginosa 5 23 41 43
P. putida 0 6 9 9
S. maltophilia 2 9 0 9
A. baumannii 1 6 1 6
A. lwoffii 1 1 0 1
Yeast 2 0 0 2
E. faecium 0 2 0 2
E. faecalis 0 1 0 1
Species
Number of isolates growing on (ESBL-producing):
Non fermenters
and others
Enterobacteria
Group
TP (a) FP (b) FN
MCC 44 24 15 74,6% 96,8% 64,7% 96,8%
BM 56 59 3 94,9% 94,9% 48,7% 99,3%
OX 56 64 3 94,9% 95,1% 46,7% 99,3%
BM 51 21 8 86,4% 95,5% 70,8% 98,2%
OX 56 20 3 94,9% 95,7% 73,7% 99,3%Selected samples (c)
Samples considered Medium
Number of samples
PPV NPVSpecificity
All samples
Sensitivity
Interpretation of isolates on Brilliance ESBL® (OX)
Abbreviations: TP (True positive), FP (False positive), FN (False negative), PPV (Positive predictive value)
(a) A sample was assigned as TP when at least one ESBL positive isolate was recovered in the sample.
(b) A sample was assigned as FP when the isolate(s) recovered were not confirmed as ESBL producers.
(c) When selection criteria for work-out (oxidase negative and colored colonies) was applied.
Table 3: Sensitivity, specificity, PPV and NPV for the three tested media
Table 2: Distribution of organisms recovered from 528 clinical samples on the three selective mediaTable 1: Species and resistance mechanisms distribution of the challenge strains tested on the
chromogenic media
Chromogenic media definitely proved superior to MCC (p<0.01) with
a substantial number of ESBL-producing isolates (20 CTX-M types out of
22) being missed by MCC.
The new Brilliance™ ESBL agar proved valuable and showed equally
high performance as the ChromID™ ESBL agar for the detection of
ESBL-producing Enterobacteriaceae yielding an excellent NPV of 99.3%
at 24h and appeared as a very promising screening method which
could enable rapid exclusion of patients not carrying ESBL.
We confirmed the lack of ability of the two chromogenic media to
differentiate ESBL-mediated resistance from other closely resembling
resistance mechanisms phenotypes (e.g. AmpC, K1 penicillinase
overproduction, OXA-1/OXA-30 penicillinase). Confirmation of ESBL
production by further characterization tests for all colonies growing
on these chromogenic media is therefore required.
1. Paterson, D. L., and R. A. Bonomo. Clin Microbiol Rev 2005;18:657-86.
2. Lucet, J. C., D. Decre, A. Fichelle, M. L. Joly-Guillou, M. Pernet, C. Deblangy, M. J. Kosmann, and
B. Regnier. Clin Infect Dis 1999;29:1411-8.
3. Meyer, E., A. Serr, C. Schneider, S. Utzolino, W. V. Kern, R. Scholz, and M. Dettenkofer. Infect
Control Hosp Epidemiol 1999;30:103-5.
4. Glupczynski Y, Berhin C, Bauraing C, Bogaerts P. J Clin Microbiol. 2007; 45(2):501-5.
When considering only colored colonies of the Enterobacteriaceae
isolates, OX yielded a higher sensitivity than BM (94.9% vs 86.4% of the
59 ESBL positive samples), although the difference did not reach
statistical significance (p=0.1).
OX proved superior to BM for the
detection of C. freundii which always had
a green coloration on the former medium
while they were systematically colorless
on BM.
Large variability in the color of the
colonies displayed by E. coli on OX
which in some cases led to difficulties
in differentiating E. coli strains from
other species belonging to the KESC
group.
Regarding the non-fermenters, no
significant differences could be
observed between the two chromogenic
media except for the marked inhibitory
activity of OX against S. maltophilia
which grew on BM.
a) E. coli
b) E. coli lacking β-
galactosidase
c) Klebsiella,
Enterobacter,
Serratia and
Citrobacter
(KESC) group
d) Proteaceae group
e) f) P. aeruginosa
a c e
b d f
BM
BM
BM
OX
OX
OX
MONT-
GODINNE
MONT-
GODINNE