toward the global cooperation: global catalogue of...
TRANSCRIPT
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Toward the global cooperation:
Global Catalogue of Microorganisms
Dr. Juncai MA
World Data Center for Microorganisms(WDCM)
Institute of Microbiology, Chinese Academy of Sciences
Beijing, April 4, 2013
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Microbial Resources Centres Mircen UNESCO
United Nations Educational, Scientific and Cultural Organization
International Union of Biological Sciences
The International Union of Microbiological Societies
World Federation for Culture Collections
MICROBIAL
RESOURCES
CENTRES MIRCEN
UNESCO
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By March 30, 2013
640 culture collections from 72 countries
World Federation of Culture Collections
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Development of WDCM
Prof. V. B. D.
Skerman
Prof. Kazuo Komagata
Prof. Hideaki Sugawara
Dr. Juncai Ma
1966
the University of Queensland
1986
RIKEN in Japan
1997
the National Institute of Genetics in
Japan
2010
Institute of Microbiology, CAS in China
The 1st generation The 2nd generation The 3rd generation
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1. Nov 2011- Dec 2012: Pilot phase
Plan to have 20-30 volunteer Collections
2. Jan 2013 - :
Welcome all collections worldwide
WFCC Global Catalogue of Microorganisms (GCM)
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More than 100 CCs
in 2014
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WDCM MDS is composed of 15 fields. The input files could
be either EXCEL or XML.
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Publications explored by Analyzer of Bio-resources Citations(ABC)
Detailed information of Strains Catalogue information from collections
Link back to original site
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Sequences explored by ABC
Detailed information of Strains Patents explored by ABC
Choose sequences to execute bioinformatics analysis
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Online exchange strains between CCs
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Link out to CCINFO database
List of culture collections in the search result
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Display the table of isolation sources
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Display the Geographic origin of strains
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Exploring information about a species
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Publication information about the species
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Patents
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Phylogenetic analysis
Multiple Sequence Alignment
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Species Identification
Strain sequence database
Blast tools
Taxonomy information
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Advanced search interface
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Searching strains by publications and patents
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Searching results by publications and patents
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WFCC Global Catalogue of Microorganisms (GCM)
GCM is not just a simple integrated
catalogue,
but also a information service platform
for culture collections worldwide
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Analyzer of Bio-resources Citation
How many Papers, Patents, Sequences, Genomes are
published worldwide using my microbial strains?
BRCs distribute many microbial strains per year.
It is our great contributions from WFCC collections.
-- An data mining tools to trace and explore utilization of microbes
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Data Mining of 3005 journals from 1953 – 2012:
172,123 papers cite 123,681 strains in 415 Culture Collects of 66 country.
12,349 patents descript 15,618 strains in 185 Culture Collects of 54 country.
747,786 sequences are from 63,406 strains in 249 Culture Collects of 55 country.
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Result of RIKEN BRC/JCM
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Paper
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Patents
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Analyzer of Bio-resource Citation
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User can upload paper information and PDF document which is related to his/her culture collection.
Upload your own papers
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Vietnam Type Culture Collection
1,000 strains
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Choose data items according to your own catalogue items
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Import your data in EXCEL file
Export an EXCEL template for data management
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http://gcm.wfcc.info/cc/vtcc
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Android version of Global Catalogue
iPAD version will be Available soon
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国际标准化组织 ISO (International Organization for Standardization)
112
46
4
• ISO covers 162 countries and areas.
• Up to now, ISO developed 19,500 standards, 3,958 are in biological field.
• 350,000 companies are using ISO standards.
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Contents Page
Foreword iv
Introduction v
1. Scope 1
2. Normative reference 1
3. Terms and definitions 1
4. Principle 2
5. Safety precaution 2
6. Reference fungi 3
7. Apparatus 3
8. Reagents and culture media 5
9. Fungus preservation and use 8
10. Spore suspension 9
11. Preparing ATP calibration curve 12
12. Testing method 13
13. Measurement of luminescence
intensity 15
14. Calculation 17
15. Test report 18
Annex A 19
Annex B 20
Bibliography 21
Antifungal activity testing method
ISO/FDIS 13629-1
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ISO/FDIS 13629-1 Antifungal activity testing method
WDCM number Species Preservation No.
00144 Aspergillus niger
ATCC 6275 UMIP 2475.98 DSM 1957 NBRC 105649
00189 Penicillium citrinum ATCC 9849 NBRC 6352
00190 Cladosporium cladosporioides
ATCC 11277 NBRC 6368 NBRC 6348
00191 Trichophyton mentagrophytes
NBRC 32409 NBRC 32412
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The utilization of WDCM reference strains according to ISO standards
count total
Food manufacture and security 25 Milk and milk products 55 157 Microbiology of food and animal feeding stuffs 77 Biological evaluation of medical devices 2 Dentistry 1 Washer-disinfectors 12 Sterilization of health care products 26 Surgical drapes, gowns and clean air suits, used as medical devices 6 99 Retrieval and analysis of surgical implants 1 Optics and optical instrument 10 Medical laboratories 5 Clinical laboratory testing and in vitro diagnostic test systems 28 Modification of the isolation media and the haemolysis test 6 Cleanrooms and associated controlled environments 2 Water quality 57 57 Textiles 10 Lubricants, industrial oils and related products 3 Chemical analysis of refractory products by XRF 1 32 Plastics 17 Safety of machinery 1 Cosmetics 22 22 Indoor air 11 Soil quality 4 15
26%
4% 41%
15%
8% 6%
medical devices and health
environments
Foodstuffs
Water quality
industrial production
Cosmetics
WDCM Reference Strain Catalogue
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Cooperation
with Regional/National Networks
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Cooperation with EMbaRC
EMbaRC CCs join GCM together
WDCM develop EMbaRC catalogue page
EMbaRC homepage links EMbaRC
catalogue in GCM
European Consortium of Microbial Resources Centres
(EMbaRC)
Cooperation with Russia collections
Jointly develop data standards
WDCM provide data platform
Join GCM
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MOU with BIOTEC, Thailand September 14, 2011
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WDCM Symposiums
and Training Course
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The First WDCM Symposium May 17-18, 2011, Beijing
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The Second WDCM Symposium June 7-8, 2012, Beijing
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WDCM Asian Training Course on Management and Application of Microbial Data
May 27 –June 6,2012, Beijing, China
Hosted By:
WFCC-MIRCEN World Data Center for Microorganisms (WDCM)
Organized By:
World Federation for Culture Collections (WFCC)
United Nations Educational, Scientific and Cultural Organization(UNESCO)
Asian Consortium for Conservation and Sustainable Use of Microbial Resources (ACM)
Asian Network for Research Resource Centers(ANRRC)
Biological Resources Center, Institute of Microbiology, CAS(IMCAS)
Research Network for Applied Microbiology, Chinese Academy of Sciences (RNAM)
Supported By:
Bureau of International Cooperation, Chinese Academy of Sciences(BICCAS)
China National Committee, the Committee on Data for Science and Technology (CODATA)
WDCM Symposiums and Training Course every year
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19 trainees from 8 countries
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14 teachers from 5 countries
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86 scientists from 70 institution/universities of 25 countries
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Chinese DB for DNA Barcode of Life
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Participants 中国科学院动物研究所 中国医学科学院药用植物研究所
中国科学院植物研究所 江西农业大学
中国科学院微生物研究所 中国科学院应用生态所
中国科学院昆明动物研究所 西北农林科技大学
中国科学院昆明植物研究所 中国科学院成都生物所
中国科学院华南植物园 东北林业大学
兰州大学 四川大学
中国科学院西双版纳园 中国科学院庐山植物园
中国科学院武汉植物园 中国科学院水生生物研究所
浙江大学 中国检验检疫科学研究院
CAS institutions:12 Universities and others:8
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WFCC president and board Members
42 collections in GCM
Asian Consortium for Conservation and Sustainable Use of Microbial
Resources (ACM)
Asian Network for Research Resource Centers(ANRRC)
European Consortium of Microbial Resources Centres (EMbaRC)
Acknowledgement
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My Team
马俊才 博士 刘澎涛
劳一美
吴林寰 硕士
杜晓萌 刘全贺
刘翟 博士
陈 成
Full time staffs:
田园静
孙清岚 硕士
李聚敏 杨 松
庞菊梅 硕士 刘力 博士
彭 程 丁 慧
王攀登
李伟 硕士
Students
夏 青 苏小林 张 润 魏永勇 吴 军
王楠 硕士
苏锦河