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Trans-Proteomics Pipeline Course Cape Town 2019 Hosted by the University of Cape Town, Faculty of Health Sciences, Cape Town Workshop: 21-22 March 2019 Venue : Heath-Teaching Lab 1-2, Anatomy building, Faculty of Health Sciences Mr Luis Mendoza Institute For System Biology, Seattle-USA Luis is a senior software engineer in the Moritz lab at ISB. For the past 14 years, he has been a main contributor to the development of the Trans-Proteomic Pipeline, which aims to provide a free and open-source suite of tools for the processing and analysis of proteomics tandem mass spectrometry data, and in use by hundreds of researchers worldwide. He has also collaborated on various aspects of the PeptideAtlas and SBEAMS projects. Dr. Eric Deutsch Institute For System Biology, Seattle-USA . Dr. Deutsch’s research activities include software development for the analysis and integration of data for systems biology research. He is the lead designer for the Systems Biology Experiment Analysis Management System (SBEAMS). He contributes the development of minimum information standards, data formats, and databases for proteomics as chair of the HUPO Proteomics Standards Initiative (PSI). Dr. Deutsch is the leader of the Trans-Proteomic Pipelineproject, which aims to provide a free and open-source suite of tools for the processing and analysis of proteomics tandem mass spectrometry data. He also heads the PeptideAtlas Project.

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Trans-Proteomics Pipeline Course Cape Town 2019

Hosted by the University of Cape Town, Faculty of Health Sciences, Cape Town

Workshop: 21-22 March 2019Venue : Heath-Teaching Lab 1-2, Anatomy building, Faculty of Health Sciences

Mr Luis Mendoza Institute For System Biology, Seattle-USA

Luis is a senior software engineer in the Moritz lab at ISB. For the past 14 years, he has been a main contributor to the development of the Trans-Proteomic Pipeline, which aims to provide a free and open-source suite of tools for the processing and analysis of proteomics tandem mass spectrometry data, and in use by hundreds of researchers worldwide. He has also collaborated on various aspects of the PeptideAtlas and SBEAMS projects.

Dr. Eric Deutsch Institute For System Biology, Seattle-USA .

Dr. Deutsch’s research activities include software development for the analysis and integration of data for systems biology research. He is the lead designer for the Systems Biology Experiment Analysis Management System (SBEAMS). He contributes the development of minimum information standards, data formats, and databases for proteomics as chair of the HUPO Proteomics Standards Initiative (PSI). Dr. Deutsch is the leader of the Trans-Proteomic Pipelineproject, which aims to provide a free and open-source suite of tools for the processing and analysis of proteomics tandem mass spectrometry data. He also heads the PeptideAtlas Project.

TPP-Course Cape Town 21-22 March 2018 | UCT- Faculty of Health Sciences

Selected attendees should have an understanding in the operation of tandem mass spectrometers, the basic structure and interpretation of peptide MS/MS spectra and proficiency in the use of computers. A commitment to attend the entire course is also required

Thursday March 21th Health Teaching Lab 1-2, Anatomy building, Faculty of Health Sciences-UCT

07:45 – 08:00 Arrival tea/coffee

08:00 – 08:05 Welcome

08:05 – 09:00 Lecture: “TPP Intro and Fundamentals”

09:00 – 10:00 PeptideProphet10:00 – 10:30 iProphet10:30 – 10:45 Tea/coffee10:45 – 11:30 ProteinProphet11:30 – 12:10 Tutorial I12:10 – 13:00 Lunch

Friday March 22nd Health Teaching Lab 1-2, Anatomy building, Faculty of Health Sciences-UCT, IDM-UCT Wernher & Beit North Lekgotla 4A &4B

13:00 – 15:00 Tutorial I15:00 – 15:30 SpectraST

15:30 – 15:45 Coffee break

15:45 – 16:00 PTMProphet

16:00 – 17:00 Tutorial II

08:00 – 08:10 Arrival tea/coffee

09:00 – 09:30 Quantitation ASAPRatio, Libra, StPeter09:30 – 10:00 Quant (Libra) Tutorial10:15 – 10:30 Tea/Coffee

10:30 – 11:45 Library Building11:45 – 12:15 PeptideAtlas 12:15 – 13:00 Lunch13:00 – 14:00 DISCO14:15 – 16:00 Round-table discussions

Organizer and Scientific Committee

Dr. Nelson da CRUZ SOARES, University of Cape Town-DIPLOMICS,

Mr. Thabo Khoza, African Centre for Gene Technologies

Prof. David TABB, University of Stellenbosch

Prof. Jonathan BLACKBURN, University of Cape Town