transcriptional profile of marek’s disease virus genes in chicken thymus during different phases...
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BRIEF REPORT
Transcriptional profile of Marek’s disease virus genes in chickenthymus during different phases of MDV infection
Xuming Hu • Aijian Qin • Ji Miao •
Wencai Xu • Chuan Yu • Kun Qian •
Hongxia Shao
Received: 5 November 2012 / Accepted: 5 February 2013 / Published online: 15 March 2013
� Springer-Verlag Wien 2013
Abstract In this study, 86 Marek’s disease virus (MDV)
transcripts were detected in chicken thymus infected with
RB1B strain. Forty-seven of them, which were mainly
involved in viral replication and immune escape, were
detected at 7 days postinfection (dpi). Expression of most
of the genes was increased at 21 and 28 dpi but reduced or
shut down at 14 dpi. Unlike others tissues, we found that a
latent infection was established at 14 dpi in infected thy-
mus. Here, we show the kinetics of expression of MDV
transcripts and their relative expression in infected thymus.
Marek’s disease virus (MDV), genus Mardivirus, species
Gallid herpesvirus 2, induces T lymphomas and nervous
disorders in chickens [2]. The primary target cells for MDV
infection in chickens are B lymphocytes. The virus
destroys cells a few days after infection, but this is then
followed by a latent phase. During latent infection of
activated T cells, genes are expressed at a low level, but the
virus can be recovered from lymphocytes [10]. Only a few
viral genes, such as ICP4, are expressed during latency [4].
These latently infected T lymphocytes are the means of
virus dissemination to the skin and feather follicle epithe-
lial cells. As infection progresses, the late cytolytic phase
and tumour development occur. However, we do not know
whether the progress of the virus infection in the thymus is
the same as in other organs. Recently, the microarray
technique has become a valuable tool for evaluating host
and viral gene expression patterns, but research has mainly
been focused on the spleen [6–8]. There have been no
reports on these expression patterns in chicken thymus, an
important central lymphoid organ.
The thymus is the main organ in which the maturation
and differentiation of avian T lymphocytes take place.
Tumor cells that develop as a result of MDV infection are
T-cells. Therefore, it is important to determine the tran-
scriptional profile of virus genes in MDV-infected chicken
thymus. In addition, the kinetics of expression of MDV
transcripts and their relative abundance during different
infection stages will help us to understand the molecular
pathogenesis of this virus and its interaction with its host in
a natural infection.
In this study, we performed a global gene expression
profiling of MDV in chicken thymus at 7, 14, 21 and 28 dpi
(days postinfection) using Affymetrix GeneChip Chicken
Genome Arrays, which contain most of the known MDV
genes. The thymus samples were from the same chickens
that were used in previously studies [9, 14]. Total RNA
was extracted from the thymus tissues of MDV-infected
birds using TRIzol Reagent (Life Technologies, Carlsbad,
CA, US) following the manufacturer’s instructions, and
RNA integrity was checked using an Agilent Bioanalyzer
2100 (Agilent Technologies, Santa Clara, CA, USA). The
total RNA was then purified using an RNeasy Mini Kit
(QIAGEN, GmBH, Germany) and an RNase-Free DNase
Set (QIAGEN, GmBH, Germany). The RNA amplification
and labelling, array hybridisation and data acquisition were
Electronic supplementary material The online version of thisarticle (doi:10.1007/s00705-013-1665-z) contains supplementarymaterial, which is available to authorized users.
X. Hu � A. Qin (&) � K. Qian � H. Shao
Ministry of Education Key Lab for Avian Preventive Medicine,
Yangzhou University, No. 12 East Wenhui Road, Yangzhou,
Jiangsu 225009, People’s Republic of China
e-mail: [email protected]
A. Qin � J. Miao � W. Xu � C. Yu � K. Qian � H. Shao
Key Laboratory of Jiangsu Preventive Veterinary Medicine,
Yangzhou University, Yangzhou 225009,
People’s Republic of China
123
Arch Virol (2013) 158:1787–1793
DOI 10.1007/s00705-013-1665-z
Table 1 Comparative MDV gene expression profile in infected chicken thymus tissue at 7, 14, 21 and 28 dpi
Probe_Set_ID Gene ID Relative expression level Fold change
7 dpi 14 dpi 21 dpi 28 dpi I14/
I7
I21/
I7
I28/
I7
MDV genes and gene products involved in immune evasion, tumor development and/or pathogenesis
AF243438.CDS1.S1_s_at telomerase RNA, v-TR (MDV001) 179.63 63.39 786.73 762.29 0.35 4.38 4.24
AF243438.CDS10.S1_s_at R-LORF14, 24 KD phosphoprotein, pp24
(MDV008)
32.94 882.14 440.84 26.78 13.38
AF243438.CDS11.S1_s_at lipase, v-LIP (MDV010) 907.47 411.86 10438.66 10210.69 0.45 11.50 11.25
AF243438.CDS3.S1_s_at CxC chemokine, v-IL8 (MDV003) 443.00 161.26 11761.70 7149.10 0.36 26.55 16.14
AF243438.CDS4.S1_s_at Meq, MEQ protein (MDV005) 305.30 235.18
AF243438.CDS55.S1_s_at UL41, virion host shutoff protein-like protein
(MDV054)
29.33 428.39 259.50 14.61 8.85
AF243438.CDS64.S1_s_at UL49.5, envelope/tegument protein-like
protein (MDV064)
26.70 48.41 40.01 34.16 1.81 1.50 1.28
AF243438.CDS74.S1_s_at R-LORF14A, 38 KD phosphoprotein, pp38
(MDV073)
238.59 82.82 2053.42 1714.56 0.35 8.61 7.19
AF243438.CDS85.S1_s_at RS1, immediate-early gene transactivator
ICP4-like protein (MDV084)
233.98 294.31
AF243438.CDS86.S1_s_at antisense RNA protein /NOTE = similar to
HSV1 RS1 immediate-early gene
transactivator ICP4 (MDV083)
107.83 134.86 5185.46 2292.14 1.25 48.09 21.26
AF243438.CDS94.S1_s_at US3, serine threonine protein kinase-like
protein (MDV092)
215.38
AF243438.CDS95.S1_s_at MDV1 S3 /NOTE = similar to HSV1 US10
virion protein (MDV093)
246.10 93.27
NC-002229.CDS4.S1_s_at RLORF4 169.12 199.24
Virus replication
AF243438.CDS21.S1_s_at UL8, DNA helicase-primase associated
protein-like protein (MDV020)
651.20 369.63
AF243438.CDS22.S1_s_at UL9, ori binding protein-like protein
(MDV021)
164.84
AF243438.CDS25.S1_s_at UL12, DNase-like protein (MDV024) 196.33 3162.80 2169.80 16.11 11.05
AF243438.CDS28.S1_s_at UL15, DNA packaging protein-like protein
(MDV027)
48.53 637.63 361.08 13.14 7.44
AF243438.CDS36.S1_s_at UL23, thymidine kinase-like protein
(MDV036)
195.53 72.71
AF243438.CDS42.S1_s_at UL28, DNA packaging protein-like protein
(MDV041)
94.26
AF243438.CDS43.S1_s_at UL29, single stranded DNA binding protein-
like protein (MDV042)
148.17 2264.39 1635.39 15.28 11.04
AF243438.CDS44.S1_s_at UL30, DNA polymerase catalytic subunit-like
protein (MDV043)
688.12 420.70
AF243438.CDS46.S1_s_at UL32, DNA packaging protein-like protein
(MDV046)
259.15 274.16
AF243438.CDS53.S1_s_at UL39, ribonucleotide reductase large subunit-
like protein (MDV052)
37.50 211.10 174.80 5.63 4.66
AF243438.CDS54.S1_s_at UL40, ribonucleotide reductase large subunit-
like protein (MDV053)
478.96 121.56 8152.52 5990.39 0.25 17.02 12.51
AF243438.CDS56.S1_s_at UL42, DNA polymerase processivity subunit-
like protein (MDV055)
10.34 54.12 552.26 356.11 5.23 53.41 34.44
AF243438.CDS62.S1_s_at UL48, gene transactivator-like protein
(MDV061)
199.22 68.99 2786.31 2781.22 0.35 13.99 13.96
AF243438.CDS65.S1_s_at UL50, dUTPase-like protein (MDV063) 284.86 110.78 4305.87 3285.40 0.39 15.12 11.53
1788 X. Hu et al.
123
Table 1 continued
Probe_Set_ID Gene ID Relative expression level Fold change
7 dpi 14 dpi 21 dpi 28 dpi I14/
I7
I21/
I7
I28/
I7
AF243438.CDS67.S1_s_at UL52, DNA helicase/primase-like protein
associated protein (MDV066)
131.02
AF243438.CDS69.S1_s_at UL54, post translational gene regulation,
ICP27 (MDV068)
202.92 82.27 4266.16 2721.33 0.41 21.02 13.41
AF243438.CDS90.S1_s_at US1, phosphoprotein ICP22-like protein
(MDV088)
60.02 24.45 885.68 772.86 0.41 14.76 12.88
Tegument
AF243438.CDS24.S1_s_at UL11, myristylated tegument protein-like
protein (MDV023)
425.07 87.55 9631.05 4232.90 0.21 22.66 9.96
AF243438.CDS27.S1_s_at UL14, minor tegument protein-like protein
(MDV026)
69.90 16.12 2176.73 980.70 0.23 31.14 14.03
AF243438.CDS34.S1_s_at UL21, tegument protein-like protein
(MDV033)
569.40 319.09
AF243438.CDS50.S1_s_at UL36, large tegument protein-like protein
(MDV049)
598.47 438.39
AF243438.CDS51.S1_s_at UL37, tegument protein-like protein
(MDV050)
134.77
AF243438.CDS60.S1_s_at UL46, tegument phosphoprotein-like protein
(MDV059)
202.64 164.65 2883.70 2594.08 0.81 14.23 12.80
AF243438.CDS61.S1_s_at UL47, tegument phosphoprotein-like protein
(MDV060)
87.86
AF243438.CDS63.S1_s_at UL49, tegument phosphoprotein-like protein
(MDV062)
30.89 248.63 211.49
Glycoprotein
AF243438.CDS23.S1_s_at UL10, viron membrane glycoprotein M-like
protein (MDV022)
1125.52 708.63
AF243438.CDS35.S1_s_at UL22, envelope glycoprotein H-like protein
(MDV034)
165.00 2418.72 1504.01 14.66 9.12
AF243438.CDS41.S1_s_at UL27, virion membrane glycoprotein B-like
protein (MDV040)
214.30 84.80 3029.93 1975.15 0.40 14.14 9.22
AF243438.CDS58.S1_s_at UL44, virion membrane glycoprotein C-like
protein (MDV057)
169.63 1841.71 1191.04 10.86 7.02
AF243438.CDS68.S1_s_at UL53, glycoprotein K-like protein (MDV067) 102.44
AF243438.CDS96.S1_s_at US6, membrane glycoprotein D-like protein
(MDV094)
172.22 67.06
AF243438.CDS97.S1_s_at US7, membrane glycoprotein I-like protein
(MDV095)
236.88
AF243438.CDS98.S1_s_at US8, membrane glycoprotein E-like protein
(MDV096)
314.91 92.73 5410.26 3746.48 0.29 17.18 11.90
AF243438.CDS99.S1_at N-terminus MDV1 S2 /NOTE = similar to
HSV1 US8 membrane glycoprotein E
(MDV097)
46.11 61.01 1150.55 452.49 1.32 24.95 9.81
AF243438.CDS99.S1_s_at N-terminus MDV1 S2 /NOTE = similar to
HSV1 US8 membrane glycoprotein E
(MDV097)
51.32
NC-002229.CDS44.S1_s_at UL26 /NOTE = gH; forms a complex with
UL1 gene product glycoprotein L (MDV038)
1759.24 1038.86
NC-002229.CDS82.S1_at LORF12 /NOTE = gC 122.31 1853.55 741.78 15.15 6.06
Nucleocapsid
AF243438.CDS16.S1_s_at UL3, nuclear phosphoprotein-like protein
(MDV015)
79.05 623.19 597.15 7.88 7.55
Transcription of Marek’s disease virus genes in thymus 1789
123
Table 1 continued
Probe_Set_ID Gene ID Relative expression level Fold change
7 dpi 14 dpi 21 dpi 28 dpi I14/
I7
I21/
I7
I28/
I7
AF243438.CDS17.S1_s_at UL4, nuclear protein-like protein (MDV016) 324.51 304.36
AF243438.CDS19.S1_s_at UL6, minor capsid protein-like protein
(MDV018)
80.18
AF243438.CDS31.S1_s_at UL18, nucleocapsid protein-like protein
(MDV030)
236.11 78.89 3682.05 3398.90 0.33 15.59 14.40
AF243438.CDS32.S1_s_at UL19, major capsid protein-like protein
(MDV031)
95.83 112.18
AF243438.CDS45.S1_s_at UL31, nuclear phosphoprotein-like protein
(MDV044)
404.82 101.93 3032.19 2167.07 0.25 7.49 5.35
AF243438.CDS49.S1_s_at UL35, capsid protein-like protein (MDV048) 303.58 132.60 13815.84 5920.17 0.44 45.51 19.50
AF243438.CDS52.S1_s_at UL38, capsid protein-like protein (MDV051) 84.90 1114.99 713.63 13.13 8.41
Other protein
AF243438.CDS20.S1_s_at UL7-like protein (MDV019) 522.23 357.91
AF243438.CDS33.S1_s_at UL20, transmembrane protein-like protein,
virus egress (MDV032)
147.20
AF243438.CDS48.S1_s_at UL34, membrane phosphoprotein-like protein
(MDV047)
5.23 16.72 300.14 326.11 3.20 57.39 62.36
AF243438.CDS57.S1_s_at UL43, probable membrane protein (MDV056) 144.38 47.19 3757.73 2665.30 0.33 26.03 18.46
AF243438.CDS59.S1_s_at UL45, envelope/transmembrane protein-like
protein, cell fusion (MDV058)
222.32 140.97
AF243438.CDS6.S1_s_at 14 KD lytic phase protein (MDV006) 139.30 68.06 2313.77 1585.84 0.49 16.61 11.38
AF243438.CDS66.S1_s_at UL51, virion phophoprotein-like protein
(MDV065)
59.70 1129.77 678.63
AF243438.CDS71.S1_s_at UL55-like protein (MDV070) 283.48 120.30 10742.49 5078.38 0.42 37.89 17.91
AF243438.CDS88.S1_s_at Cytoplasmic protein (MDV086) 124.74 171.99 6823.98 4938.32 1.38 54.70 39.59
AF243438.CDS91.S1_s_at US10, virion protein-like protein (MDV089) 488.61 231.58 6902.77 6305.32 0.47 14.13 12.90
AF243438.CDS92.S1_s_at MDV1 S3 /NOTE = similar to HSV1 US10
virion protein (MDV090)
43.32 779.93 463.01 18.00 10.69
NC-002229.CDS5.S1_s_at RLORF5 49.73 753.05 356.54
Hypothetical protein
AF243438.CDS12.S1_s_at hypothetical protein (MDV011) 147.21 132.34
AF243438.CDS13.S1_s_at LORF2, hypothetical protein (MDV012) 95.17 34.09 2564.81 1884.26 0.36 26.95 19.80
AF243438.CDS70.S1_s_at LORF4, hypothetical protein (MDV069) 2437.13 1337.72
AF243438.CDS72.S1_s_at hypothetical protein (MDV071) 41.06 47.60 478.38 367.03 1.16 11.65 8.94
AF243438.CDS8.S1_s_at RLORF12, hypothetical protein (MDV007) 270.23 184.14 2238.32 875.33 0.68 8.28 3.24
AF243438.CDS83.S1_s_at hypothetical protein (MDV081) 57.12 950.27 480.86
AF243438.CDS84.S1_s_at hypothetical protein (MDV082) 242.28 187.69 5826.73 3865.89 0.77 24.05 15.96
AF243438.CDS87.S1_s_at hypothetical protein (MDV085) 322.17 220.22
AF243438.CDS9.S1_s_at hypothetical protein (MDV009) 92.66 60.67
AY510475.CDS10.S1_s_at RLORF11, hypothetical protein 131.75 132.14 3928.20 1923.82 1.00 29.82 14.60
AY510475.CDS3.S1_at USex1, hypothetical protein 41.35 77.39 116.28 1.87 2.81
AY510475.CDS45.S1_s_at LORF5, hypothetical protein 578.78 149.27
AY510475.CDS6.S1_s_at RLORF3, hypothetical protein 197.39
AY510475.CDS8.S1_s_at RLORF8, hypothetical protein 103.01
AY510475.CDS81.S1_s_at UL56, hypothetical protein 425.04 323.75 8350.26 5519.40 0.76 19.65 12.99
AY510475.CDS87.S1_s_at UL56, hypothetical protein 1089.00 356.96 16885.68 9402.15 0.33 15.51 8.63
1790 X. Hu et al.
123
all carried out at Shanghai Biotechnology Corporation. The
raw data were normalised using the MAS 5.0 algorithm,
Gene Spring Software 11.0 (Agilent Technologies, Santa
Clara, CA, USA).
An uninfected chicken thymus was used as a control,
and RNA samples from control birds were used for
detection of background signal intensity (noise) in the
microarray analysis.
The kinetics of expression profiling of MDV transcripts
in infected chicken thymus tissues showed that a total of 86
MDV genes (7 dpi, 47; 14 dpi, 39; 21 dpi, 80; and 28 dpi,
78) were detected, but no MDV gene was found in
control thymus tissues (Table 1). At 7 dpi, 47 MDV gene
transcripts were found. These genes mainly encoded the
virion membrane glycoprotein, envelope glycoprotein,
capsid protein, DNA packaging protein and nucleocapsid
protein. Expression of most of these genes was increased at
21 and 28 dpi but reduced or shut down at 14 dpi. This
result indicated that a latent infection was established at
14 dpi in the thymus infected with the RB1B strain. Only
37 MDV transcripts were detected at this stage, and their
relative abundance was very low.
Seventeen genes associated with virus replication were
detected in infected thymus (Table 1; Fig. 1A). These virus
genes mainly encoded DNA helicase-primase associated
protein, ori-binding protein, single-stranded DNA binding
Fig. 1 Kinetics of expression of MDV transcripts involved in virus replication (A) and immune evasion and/or tumor development (C) and
those encoding glycoproteins (B) and tegument proteins (D) in thymus infected with the RB1B strain
Table 1 continued
Probe_Set_ID Gene ID Relative expression level Fold change
7 dpi 14 dpi 21 dpi 28 dpi I14/
I7
I21/
I7
I28/
I7
AY510475.CDS9.S1_s_at RLORF10, hypothetical protein 867.18 391.36
Relative expression level = relative expression level of MDV genes in infected chicken thymus by microarray analysis
I14/I7 = 14 dpi/7 dpi. Fold change [1, genes that were upregulated at 14 dpi in comparison to 7 dpi; fold change \1, genes that were
downregulated at 14 dpi in comparison to 7 dpi. Fold change = 1, genes with no change in the expression levels between 14 and 7 dpi
I21/I7 = 21 dpi/7 dpi. Fold change [ 1, genes that were upregulated at 21 dpi in comparison to 7 dpi
I28/I7 = 28 dpi/7 dpi. Fold change [1, genes that were upregulated at 28 dpi in comparison to 7 dpi
Transcription of Marek’s disease virus genes in thymus 1791
123
protein, DNA packaging protein, ribonucleotide reductase
protein, DNA polymerase processivity subunit-like protein
and posttranslational gene regulation. Expression of these
genes, with the exception of UL42 (encoding DNA poly-
merase processivity subunit-like protein), was reduced or
shut down at 14 dpi but increased sharply at 21 and 28 dpi.
In addition, 12 MDV genes encoding glycoproteins were
detected in infected thymus. However only gB and gE were
detected at 14 dpi (Table 1; Fig. 1B). The relative abun-
dance of gB, an important MDV gene that represents the
level of virus replication, was reduced from 214.30 at 7 dpi
to 84.80 at 14 dpi, then increased to 3029.93 at 21 dpi and
1975.15 at 28 dpi. The abundance of gE was reduced from
314.91 at 7 dpi to 92.73 at 14 dpi, then increased to
5410.26 and 3746.48 at 21 and 28 dpi, respectively. The
results indicate that a latent infection was established at 14
dpi in the thymus infected with RB1B strain.
Thirteen genes involved in immune evasion and/or
tumour development were detected in infected thymus
(Table 1; Fig. 1C). These genes included UL49.5, UL41,
US3, Meq, v-TR, v-IL8, v-LIP, RLORF4, pp24, pp38,
RS1, MDV1 S3 and antisense RNA. From the kinetics of
expression profiling of these genes, we also found that the
expression of these genes was restricted at 14 dpi, and they
were over-activated at 21 and 28 dpi in infected thymus
(Fig. 1C). Only one of them, UL49.5, was increased at 14
dpi, and it showed similar abundance at 21 and 28 dpi.
UL49.5 is involved in the downregulation of MHC class I
molecules in MDV-infected cells [11].
In addition, eight viral genes encoding tegument pro-
teins (UL11, UL14, UL21, UL36, UL37, UL46, UL47 and
UL49) were detected in our experiment (Table 1; Fig. 1D).
For herpes simplex virus type 1 (HSV-1), UL14 not only
blocks apoptosis (both Meq and vTR have anti-apoptotic
properties) but also possesses heat shock protein (HSP)-
like functions and regulates viral replication [15, 16]. In
our previous research, we found that the expression of
HSP90 protein was reduced after MDV infection [9]. It is
recognized that HSP90 plays an important role not only in
the folding and stability of many carcinogenic signalling
proteins but also during herpes simplex virus infection and
replication [3, 12]. In this case, UL14 could function in
MDV replication and transformation. We speculate that
UL14 could be a previously unrecognized viral oncogene
and have been studying the function of UL14.
To confirm the microarray results, real-time PCR was
performed on four selected genes (gB, Meq, vTR and
UL14) as reported previously [9]. The sequences of the
primers are given in Electronic Supplementary Material;
the sequences for the primers for 18S and Meq were
reported previously [1, 13]. Gene expression levels were
normalised against the expression of chicken 18S mRNA
and data were compared using Student’s t-test with the
Statistical Package for Social Sciences (version 16.0).
Table 2 shows the relative differences in expression of
selected MDV genes based on real-time PCR results. The
expression levels of gB and UL14 were transiently
increased at 7 dpi and decreased at 14 dpi, then increased
again at 21 dpi and decreased at 28 dpi. The corresponding
changes were also observed in the array results. However,
the expression of vTR and Meq was not fully in agreement
with the array results. This discrepancy, which has been
Table 2 MDV gene expression analysis by real-time PCR
Gene Days postinfection Cn mean ± SD DCn mean DCn SE Relative expression Fold difference
gB 7 33.53 ± 0.23 18.73 0.14 168.96 1.00
gB 14 35.50 ± 0.34 21.80 0.17 27.98 0.17
gB 21 31.03 ± 0.30 15.93 0.17 7067.23 41.83
gB 28 31.51 ± 0.24 16.99 0.12 2526.04 14.95
Meq 7 30.87 ± 0.14 16.07 0.08 2710.44 1.00
Meq 14 29.08 ± 0.10 15.38 0.05 1965.94 0.73
Meq 21 26.02 ± 0.18 10.92 0.12 236108.52 87.11
Meq 28 25.89 ± 0.09 11.38 0.06 146853.16 54.18
UL14 7 27.68 ± 0.07 12.89 0.06 899.26 1.00
UL14 14 29.63 ± 0.33 15.94 0.19 11.95 0.01
UL14 21 27.95 ± 0.09 13.43 0.06 2473.06 2.75
UL14 28 28.95 ± 0.05 13.84 0.08 888.78 0.99
vTR 7 30.73 ± 0.21 15.93 0.12 13.26 1.00
vTR 14 28.58 ± 0.24 14.89 0.12 32.58 2.46
vTR 21 27.78 ± 0.23 12.68 0.14 230.65 17.39
vTR 28 28.29 ± 0.13 13.77 0.07 21.28 1.61
1792 X. Hu et al.
123
observed previously [5], may reflect developmental chan-
ges in vTR and Meq gene expression or mRNA stability.
In conclusion, we provide an expression profile of MDV
transcripts and kinetics of expression of MDV transcripts in
the thymus of chickens. A total of 86 MDV genes were
detected in infected chicken thymus. The data may provide
the groundwork for future investigation into the biology
and pathogenesis of MDV.
Acknowledgments This research was supported by the National
Natural Science Foundation of China (30871873, 31072135), Major
Basic Research of Natural Science Foundation of the Jiangsu Higher
Education Institutions of China (Grant No. 12KJA23001) and The
Program for Changjiang Scholars and Innovative Research Team in
University (IRT0978).
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