ugent belgium pi’s: wim van criekinge, marjan de mey, yves...

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UGent_Belgium PI’s: Wim Van Criekinge, Marjan De Mey, Yves Briers Sofie Lodens, Michiel Stock, Sandra Steyaert, Steven De Blieck, Bob Van Hove, Bram De Jaegher, David Bouwens Maarten Van Brempt, Bram Danneels, Griet De Clercq, Wouter Steyaert, Chari Vandenbussche

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Page 1: UGent Belgium PI’s: Wim Van Criekinge, Marjan De Mey, Yves ...2016.igem.org/wiki/images/e/e0/T--UGent_Belgium--phdseminar.pdf · PI’s: Wim Van Criekinge, Marjan De Mey, Yves Briers

UGent_Belgium

PI’s: Wim Van Criekinge, Marjan De Mey, Yves Briers

Sofie Lodens, Michiel Stock, Sandra Steyaert, Steven De Blieck, Bob Van Hove, Bram De Jaegher, David Bouwens

Maarten Van Brempt, Bram Danneels, Griet De Clercq, Wouter Steyaert, Chari Vandenbussche

Presenter
Presentation Notes
De iGEM foundation is een onafhankelijk, non-profit organisatie die bestaat uit 3 delen: �- the iGEM competition: een internationale wedstrijd die toegankelijk is voor middelbare school studenten als voor universiteit studenten tot PhD’s en professoren, die geinteresseerd zijn in synthetische biologie�- the LABS program: een programma voor internationale academische laboratoria die dezelfde resources krijgen als de studenten uit de competitie�- the registry of standard biological parts: een groeiende collectie van genetische sequenties die gebruikt kunnen worden voor het bouwen van biologische devices en systemen, zogenaamde BioBricks�Wij gaan ons in de presentatie focussen op het deel van de iGEM competitie
Page 2: UGent Belgium PI’s: Wim Van Criekinge, Marjan De Mey, Yves ...2016.igem.org/wiki/images/e/e0/T--UGent_Belgium--phdseminar.pdf · PI’s: Wim Van Criekinge, Marjan De Mey, Yves Briers

IntroductionTackle a global problem

Water scarcity

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Page 3: UGent Belgium PI’s: Wim Van Criekinge, Marjan De Mey, Yves ...2016.igem.org/wiki/images/e/e0/T--UGent_Belgium--phdseminar.pdf · PI’s: Wim Van Criekinge, Marjan De Mey, Yves Briers

IntroductionWhere to get more fresh water?

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Page 4: UGent Belgium PI’s: Wim Van Criekinge, Marjan De Mey, Yves ...2016.igem.org/wiki/images/e/e0/T--UGent_Belgium--phdseminar.pdf · PI’s: Wim Van Criekinge, Marjan De Mey, Yves Briers

StrategyHow to harvest atmospheric water?

Create 3D-printed optimized shape Coat with biological nucleation proteinsfor water condensation and collection to improve water condensation

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Page 5: UGent Belgium PI’s: Wim Van Criekinge, Marjan De Mey, Yves ...2016.igem.org/wiki/images/e/e0/T--UGent_Belgium--phdseminar.pdf · PI’s: Wim Van Criekinge, Marjan De Mey, Yves Briers

Strategy3D-printed optimized shape for water condensation and collection

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Page 6: UGent Belgium PI’s: Wim Van Criekinge, Marjan De Mey, Yves ...2016.igem.org/wiki/images/e/e0/T--UGent_Belgium--phdseminar.pdf · PI’s: Wim Van Criekinge, Marjan De Mey, Yves Briers

StrategyHow to harvest atmospheric water?

Create 3D-printed optimized shape Coat with biological nucleation proteinsfor water condensation and collection to improve water condensation

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Page 7: UGent Belgium PI’s: Wim Van Criekinge, Marjan De Mey, Yves ...2016.igem.org/wiki/images/e/e0/T--UGent_Belgium--phdseminar.pdf · PI’s: Wim Van Criekinge, Marjan De Mey, Yves Briers

StrategyHow to coat a protein on a printed structure?

- PLA + biotine

- Fusion protein with streptavidin

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Page 8: UGent Belgium PI’s: Wim Van Criekinge, Marjan De Mey, Yves ...2016.igem.org/wiki/images/e/e0/T--UGent_Belgium--phdseminar.pdf · PI’s: Wim Van Criekinge, Marjan De Mey, Yves Briers

StrategyHow to harvest atmospheric water?

Create 3D-printed optimized shape Coat with biological nucleation proteinsfor water condensation and collection to improve water condensation

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Page 9: UGent Belgium PI’s: Wim Van Criekinge, Marjan De Mey, Yves ...2016.igem.org/wiki/images/e/e0/T--UGent_Belgium--phdseminar.pdf · PI’s: Wim Van Criekinge, Marjan De Mey, Yves Briers

StrategyCondensation promoting protein?

… meet the Pseudomonas syringae Ice Nucleating Protein (INP)

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Page 10: UGent Belgium PI’s: Wim Van Criekinge, Marjan De Mey, Yves ...2016.igem.org/wiki/images/e/e0/T--UGent_Belgium--phdseminar.pdf · PI’s: Wim Van Criekinge, Marjan De Mey, Yves Briers

StrategyCondensation promoting protein?

… meet the Pseudomonas syringae Ice Nucleating Protein (INP)

Recently Pseudomonas syringae was alsofound in clouds, where it might help theformation of rain by acting as a condenationnucleus

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Page 11: UGent Belgium PI’s: Wim Van Criekinge, Marjan De Mey, Yves ...2016.igem.org/wiki/images/e/e0/T--UGent_Belgium--phdseminar.pdf · PI’s: Wim Van Criekinge, Marjan De Mey, Yves Briers

Work packages

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WP1. Shape

WP2. Filament

WP3. BioFunction

WP4. Functional Assay

Page 12: UGent Belgium PI’s: Wim Van Criekinge, Marjan De Mey, Yves ...2016.igem.org/wiki/images/e/e0/T--UGent_Belgium--phdseminar.pdf · PI’s: Wim Van Criekinge, Marjan De Mey, Yves Briers

WP 1: Shape

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Page 13: UGent Belgium PI’s: Wim Van Criekinge, Marjan De Mey, Yves ...2016.igem.org/wiki/images/e/e0/T--UGent_Belgium--phdseminar.pdf · PI’s: Wim Van Criekinge, Marjan De Mey, Yves Briers

WP 2: Filament

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Biotinylated PLA

a) Chemical synthesis → too complicated

b) Impregnated and remolten PLA:

• Dissolve PLA + biotin in hot DMF

• Crash out PLA by adding to EtOH

• Wash with biotin saturated EtOH

• Extrude new filament

c) Coat with ‘biotin paint’:

• DCM saturated with PLA, suspended biotin

Page 14: UGent Belgium PI’s: Wim Van Criekinge, Marjan De Mey, Yves ...2016.igem.org/wiki/images/e/e0/T--UGent_Belgium--phdseminar.pdf · PI’s: Wim Van Criekinge, Marjan De Mey, Yves Briers

WP 2: Filament

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Test for addition of biotin: HABA/avidin assay

Coated Impregnated Untreated

Page 15: UGent Belgium PI’s: Wim Van Criekinge, Marjan De Mey, Yves ...2016.igem.org/wiki/images/e/e0/T--UGent_Belgium--phdseminar.pdf · PI’s: Wim Van Criekinge, Marjan De Mey, Yves Briers

WP 3: BioFunction

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Whole-cell Protein extract

Control

Functional

Setup constructs

Page 16: UGent Belgium PI’s: Wim Van Criekinge, Marjan De Mey, Yves ...2016.igem.org/wiki/images/e/e0/T--UGent_Belgium--phdseminar.pdf · PI’s: Wim Van Criekinge, Marjan De Mey, Yves Briers

WP 3: BioFunction

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The making of …

A monomeric GFPuv (mGFPuv) A GG-safe Ice Nucleating Protein

Page 17: UGent Belgium PI’s: Wim Van Criekinge, Marjan De Mey, Yves ...2016.igem.org/wiki/images/e/e0/T--UGent_Belgium--phdseminar.pdf · PI’s: Wim Van Criekinge, Marjan De Mey, Yves Briers

WP 3: BioFunction

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The making of …

And a truncated Ice Nucleating Protein(INP-RC fusion proteins with GFP/streptavidin)

“Analogous ice forming movie”

1) inaZ(RC)-mSA2 3) mGFPuv-Strep 5) mGFPuv2) inaZ(RC)-mGFPuv 4) mGFPuv-mSA2

Page 18: UGent Belgium PI’s: Wim Van Criekinge, Marjan De Mey, Yves ...2016.igem.org/wiki/images/e/e0/T--UGent_Belgium--phdseminar.pdf · PI’s: Wim Van Criekinge, Marjan De Mey, Yves Briers

WP 4: Functional AssayDoes it stick?

PLA filament+biotine PLA+biotine coated glass plate

Left: mGFPuv – mStrep ?10: mGFPuv – mStrep Right: a control..11: mGFPuv

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Whole-cell approach no visible fluorescence(data not shown)

Page 19: UGent Belgium PI’s: Wim Van Criekinge, Marjan De Mey, Yves ...2016.igem.org/wiki/images/e/e0/T--UGent_Belgium--phdseminar.pdf · PI’s: Wim Van Criekinge, Marjan De Mey, Yves Briers

WP 4: Functional AssayDoes it stick?

… a more sensitive assay

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Histag

Page 20: UGent Belgium PI’s: Wim Van Criekinge, Marjan De Mey, Yves ...2016.igem.org/wiki/images/e/e0/T--UGent_Belgium--phdseminar.pdf · PI’s: Wim Van Criekinge, Marjan De Mey, Yves Briers

WP 4: Functional AssayDoes it make water?

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Page 21: UGent Belgium PI’s: Wim Van Criekinge, Marjan De Mey, Yves ...2016.igem.org/wiki/images/e/e0/T--UGent_Belgium--phdseminar.pdf · PI’s: Wim Van Criekinge, Marjan De Mey, Yves Briers