ultrafast electronic spectroscopy.ppt...bacteriorhodopsin isom. ≈ 70 % in protein isom. ≈ 17 %...

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Ultrafast electronic spectroscopy Majed Chergui

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Page 1: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Ultrafast electronic spectroscopy

Majed Chergui

Page 2: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Arrhenius formulaTkE BaAeTk /)( in sec-1

A = frequency factorkB = Boltzmann constantT = temperature (in Kelvin)Ea= activation energy

A ~ 1013 !*Kinetics: overall population of reactantsbefore the reaction and of products afterthe reaction

* Note that this corresponds to times of the order of 100 fs

Page 3: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

The fundamental time scale in Condensed Matter, Chemistry and Biology

• Speed of sound: 300 m/s-1000m/s => 0.3-1.0 Å in 100 fs

• Time scale of half-oscillations:H2; e= 4155 cm-1 —> 7.6 fsI2; e= 120 cm-1 —> 270 fs

• 1fs / 1s <=> 1s / 32 million years!

Page 4: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Vibrational period of H2 in the X state (e = 4401 cm-1) 7.6 fs

Rotational period of H2 in the X state (EJ = 2BJ, B = 60cm-1):

560 /J fs

Vibrational period of I2 in the B state (e = 125 cm-1) 270 fs

Rotational period of I2 in the B state (EJ = 2BJ, B = 0.029 cm-1): 1.15 /J ns

Vibrational period of a van der Waals molecule Hg-Ar in the Xstate (e = 6 cm-1)

6 ps

Rotational period of Hg-Ar in the B state (EJ = 2BJ, B = 0.02cm-1)

800 /J ps

Number of periods in a 6fs-pulse at 600 nm 3

Length of a 6fs-laser pulse 1.8 m

Spectral width of a 1 ps pulse 15 cm-1

Page 5: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Conventional spectroscopy (energy resolved)also called CW (continuous wave) or steady-state spectroscopy

Page 6: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Time-wavelength relationship

Page 7: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Correspondence between energy and time

• Doppler width 10-3 to 10-1 cm-1

• Rotational energies 10-2 to 10 cm-1

• Phonon energies ≤ 100 cm-1

• Vibrational energies 100 to 4000 cm-1

• Electronic energies ≥ 5000 cm-1

Time-to-width relationships for homogeneous lines

Energy (cm-1 ) Time (seconds)500 10-14

5 10-12

5 10-4 10-8

Page 8: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

For a molecular state (e.g. diatomic molecule)

Left: Decay of the autocorrelation function. Right: absorption spectrumT: time to depart from the Franck-Condon regionT: oscillation period of a vibrational quantum in the excited stateT3: electronic lifetime of the state

Page 9: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Decay of H2O, qualitative picture: saddle-shaped potential surface

Bending motion

YX…Y elongation

Page 10: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Photodissociation of H2O

Absorption spectrum

Time evolution of the autocorrelation function

Page 11: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Resonance Raman: time dependent view

Page 12: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Resonance Raman spectrum of CH3I

Exc. 266 nm

mre et al, JPC 84

Page 13: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Some basic quantum mechanics…The time-dependent Schrödinger equation:

has solutions of the form

where (r) is the eigenfunction, which is the solution of the time-independent Schrödinger equation and the exponential term represents the time dependence.

ttritrH

),(),(

/)(),( iEtertr

Page 14: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Superposition of states

n

nn rar )()0,(

)/sin()/cos(/ EtiEte iEt

oscillates from 1 to –i to 1 to i …, at a frequency of /E

e.g., the 2s state has an energy of E= 1.6 10-18 J, i.e. the phase oscillatesat 2.5 1015 Hz (i.e. T= 0.4 fs)

Page 15: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

• This is a linear combination of stationary wave functions but is not a solution of the stationary problem. It represents a coherent superposition of states or a wave packet. The an coefficients are given by:

)0( ta nn

/)(),( tiE

nnn

neratr

Page 16: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

ˆ t t t

ˆ ˆ,t Hdidt

ˆ ˆ ˆˆ ˆ( )j

A A ATr j j

2

jj jc * jk jki t i tjk j k jkt c c e d e

Density matrix description in Liouville space

Page 17: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Wave packets

Page 18: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Vibrational wave packets

Page 19: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Forms of ultrafast temporal evolution of excited states

• Kinetics: exponential behaviour, evolution of populations

• Dynamics: oscillatory behaviour (wp), evolution of bodies

Page 20: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

How to create a wavepacket?

Page 21: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

How to create a wavepacket?

(r , t ) an n (r)e iE n t /

n

k

k dktrkgtr ),()(),(

Page 22: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption
Page 23: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Pump-probe and wavepacket dynamics

0 1 2 3

1

2

3

retard pompe - sonde / picosecondes

t = 300 fs

Pump-probe time delay

Page 24: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

3 �m �� 10fs

Page 25: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

QuickTime™ and a decompressor

are needed to see this picture.

3 �m �� 10fs

Page 26: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Possible experimental strategies• Transient absorption

Pump-Probe spectroscopy• TR fluorescence

• Non-linear Four WaveMixing spectroscopies– Transient Grating– Photon Echo

• X-rays techniques

• Multidimensionalspectroscopies

• Terahertz spectroscopy...

Page 27: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption
Page 28: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Revivals: S.I. Vetchinkin et al, Chem. Phys. Letters, 222 (1994) 394

Page 29: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Zewail et al, J. Phys. Chem. 1996, 100, 7832-7848

Page 30: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Transfer of vibrational coherence to products (Zewail et al, J. Chem. Phys. 91 (1989) 7437)

Page 31: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Transfer of coherence to products in a bath(Banin and Ruhman, J. Chem. Phys. 98 (1993) 4391; Pugliano et al, J.

Chem. Phys. 104 (1995) 5062)

IInmhI 23 )308(Solute/pump-fragment/probe experiment:

I2-

Page 32: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Vibrational wave packets (moving structures) in biological systems using transient absorption spectroscopy

Page 33: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

From L. Stryer, Biochemistry

Retinal Proteins

11-cis all-trans

13-trans 13-cis

Rhodopsin

Bacteriorhodopsin

Isom. ≈ 70 % in proteinIsom. ≈ 17 % in solution

Page 34: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption
Page 35: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

poche

Heme

Heme pocket

Fe C O

Page 36: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

The inset show the absorption band and the pump and probe wavelengths.The figure shows the transient absorption signal of deoxy Mb

The lower figure is a comparison of the power spectrum of the transient in the upper figure with the resonance Raman spectrum of deoxy Mb

Page 37: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Transient absorption spectrum of MbNO. The inset show the absorption bands of Mb and MbNO.

Power spectrum of the trace in The upper figure and resonanceRaman spectrum of MbNO.

Rosca et al, J. Phys. Chem. A104 (2000) 4280)

Page 38: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Summary• Vibrational coherences are observed in a large

class of many-body systems: large molecules, liquids, solids, proteins, etc., even upon product formation.

• Energy can be localised on specific intra- and intermolecular bonds, for eventual control experiments.

• While for chemical and physical systems, the connection between the process and the vibrational coherences is possible, vibrational coherences in proteins do not necessarily imply that the motion that is observed is biologically significant.

Page 39: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Ultrafast emission spectroscopy

• electronic (ps-ns)– TC-SPC – Streak Camera

• purely optical (sub-ps)– Kerr Gating– Up-conversion

Page 40: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Fluorescence Gating

Time delay between pump and gate pulses

I

Page 41: Ultrafast electronic spectroscopy.ppt...Bacteriorhodopsin Isom. ≈ 70 % in protein Isom. ≈ 17 % in solution poche Heme Heme pocket Fe C O The inset show the absorption

Fluorescence Up-conversion