upf1
DESCRIPTION
Supplementary Figure 1. UPF1 protein. KD - UPF1 UPF1 100% 33% 11% shRNA1 shRNA2. relative mRNA levels. UPF1. Smbb ’. no KD shRNA1 shRNA2. SMG6 protein. KD - SMG6 SMG6 100% 33% 11% shRNA1 shRNA2. - PowerPoint PPT PresentationTRANSCRIPT
UPF1
Smbb’
SMG6
Smbb’
KD - SMG6 SMG6 100% 33% 11% shRNA1 shRNA2
0
20
40
60
80
100UPF1 mRNA
0
20
40
60
80
100SMG6 mRNA
020406080
100
SMG7 mRNA
no KD shRNA1 shRNA2
KD - UPF1 UPF1 100% 33% 11% shRNA1 shRNA2
Supplementary Figure 1
UPF1 protein
SMG6 protein
rela
tive
mR
NA
leve
lsre
lativ
e m
RN
A le
vels
rela
tive
mR
NA
leve
ls
no KD shRNA1 shRNA2
no KD shRNA1 shRNA2
DNAJB6
tv1
DNAJB6
tv2
LETM
D1
POFUT2
tv1
POFUT2
tv2
POFUT2
tv3
RCP9
RP9P
TMEM
-183
A
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
mRNA expression levels in NMD factors' knockdown
no KD
UPF1 KD microarray
UPF1 KD RT-qPCR
SMG6 KD microarray
SMG6 KD RT-qPCR
SMG7 KD microarray
SMG7 KD RT-qPCR
rela
tive
mR
NA
leve
lsSupplementary Figure 2
Supplementary Figure 3
KD - UPF1 SMG6 SMG70
0.2
0.4
0.6
0.8
1
1.2
1.4
1.6
1.8
2
Histone transcripts in several NMD factors' knockdowns
HIST1H1
HIST1H2ab
HIST1H3
Rel
ativ
e e
xpre
ssio
n o
f hi
sto
ne
tra
nsc
rip
ts