us gbif tools and services august 12 th, 2010 giri palanisamy nbii, ornl mike frame nbii, usgs
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US GBIF Tools and Services
August 12th , 2010
Giri PalanisamyNBII, ORNL
Mike FrameNBII, USGS
Giri PalanisamyNBII, ORNL
Mike FrameNBII, USGS
![Page 2: US GBIF Tools and Services August 12 th, 2010 Giri Palanisamy NBII, ORNL Mike Frame NBII, USGS](https://reader035.vdocument.in/reader035/viewer/2022062223/5516c1ba550346f0208b58e2/html5/thumbnails/2.jpg)
NBII-GBIF Services
• Hosts GBIF mirror for North America • Various data extraction services and visualizations• IPT prototype installation• Trainings/Workshops on DiGIR and IPT• Operates UDDI service• Supports several Cooperative agreements at
Museum’s & Herbaria in US
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GBIF Data Portal
GBIF Site: http://data.gbif.orgU.S. Mirror: http://us.mirror.gbif.org
World: - 201,275,468 occurrence records - 318 data providers
USA: - 83,607,198 records - 91 data providers
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Web services to query GBIF data
OGC web services:• Taxon data service: http:// us.mirror.gbif.org/ws/rest/taxon
• Occurrence record data service: http:// us.mirror.gbif.org/ws/rest/occurrence
• Occurrence density data service: http:// us.mirror.gbif.org/ws/rest/density
• Dataset metadata service: http:// us.mirror.gbif.org/ws/rest/resource
• Data provider metadata service: http:// us.mirror.gbif.org/ws/rest/provider
• Data network metadata service: http:// us.mirror.gbif.org/ws/rest/network
• More information: http://wiki.gbif.org/dadiwiki/wikka.php?wakka=DeveloperAPIs
• Web services to query US GBIF data (under development)
![Page 5: US GBIF Tools and Services August 12 th, 2010 Giri Palanisamy NBII, ORNL Mike Frame NBII, USGS](https://reader035.vdocument.in/reader035/viewer/2022062223/5516c1ba550346f0208b58e2/html5/thumbnails/5.jpg)
GBIF Data Analysis And Extractions for NBII Partners
• Example GBIF Data Extractions:– Extract data for specific State(s), countries.– Extract data for list of species (plants, birds,
butterflies etc..)
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GBIF Data Analysis Extractions Cont..
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NBII Customized widgets for exploring GBIF data
GBIF Widget for Vermont Area
![Page 8: US GBIF Tools and Services August 12 th, 2010 Giri Palanisamy NBII, ORNL Mike Frame NBII, USGS](https://reader035.vdocument.in/reader035/viewer/2022062223/5516c1ba550346f0208b58e2/html5/thumbnails/8.jpg)
• Based on NBII CH/Lucene/Solr index
• Species occurrences query– http://nbii-gbif.ornl.gov/us_solr/select?
indent=on&version=2.2&q=scientific_name%3A%22Abildgaardia ovata%22&start=0&rows=100&fl=latitude%2Clongitude&qt=standard&wt=standard&explainOther=&hl.fl=
Web Services to Query US GBIF Data
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Simple Web Services Client to get occurrence counts
http://mercury.ornl.gov/gbifUtility/
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• GBIF collection metadata records (EML) are now available in the NBII metadata clearinghouse and in the NBII catalog search.
• IPT prototype installation available in the NBII servers (for testing prupose)
• Other NBII-GBIF services
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• Species Level xml files for NBII Catalog search
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GBIF Species Records in NBII Catalog Search
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• NBII Search screen with GBIF records here……
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• Provide various easy-to-use visualization tools and web services for extracting NA GBIF data (local, state, regional, country, and thematic level)
• Enable county level GBIF data visualization and extraction
• Extend the collaboration activities with new projects such as USVH, DataONE etc..
• Enable species mashups on the NBII metadata records
• Evaluate broader services for all GBIF data
• Current and future tasks