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International Ocean Discovery Program
JOIDES Resolution Science Operator
FY20 Q2 Operations and Management Report
1 January–31 March 2020Cooperative Agreement OCE-1326927
Submitted by the JRSOto
The National Science Foundationand
The JOIDES Resolution Facility Board
8 May 2020
Contents4 1.Introduction
4 2.Expeditionoperations
Expedition383:DynamicsofPacificAntarcticCircumpolarCurrent
Expedition385:GuaymasBasinTectonicsandBiosphere
Expedition378:SouthPacificPaleogeneClimate
Expedition384:EngineeringTesting
Expedition395:ReykjanesMantleConvectionandClimate
Expedition387:AmazonMargin
Expedition388:EquatorialAtlanticGateway
Expeditions390and393:SouthAtlanticTransect1and2
Expedition391:WalvisRidgeHotspot
Expedition392:AgulhasPlateauCretaceousClimate
9 3.Managementandadministration
Progressreporting
Liaisonactivities
Projectportfoliomanagement
12 4.Subcontractactivities
12 5.Scienceoperations
Expeditionoutreachsupport
12 6.Technicalandanalyticalservices
Maintenanceperiodactivities
Analyticalsystems
Laboratoryworkinggroups
17 7.Development,IT,andDatabases
Expeditiondata
Networksystemsoperation,maintenance,andsecurity
19 8.Corecuration
Samplingpartiesandcurationpoliciesandprocedures
Sampleandcurationstrategies
Samplerequestsandcoresampling
Useofcorecollectionandeducationandoutreachsupport
OnshoreXRFscanning
21 9.Publicationservices
Scientificpublications
Webservices
Publicationscoordination
Discoveryandaccessibility
Legacyactivities
Citationmanagement
26 Appendix:JRSOquarterlyreportdistribution
4FY20 Quarterly Report 2
1.IntroductionThisquarterlyoperationsandmanagementreportreflectsactivitiesanddeliverablesoutlinedintheInternationalOceanDiscoveryProgram(IODP)JOIDES ResolutionScienceOperator(JRSO)FY20AnnualProgramPlantotheNationalScienceFoundation(NSF),asimplementedbyTexasA&MUniversity(TAMU),actingasmanagerandscienceoperatoroftheresearchvesselJOIDES ResolutionasaresearchfacilityforIODP.AdministrativeservicesinsupportofJRSOactivitiesareprovidedbytheTexasA&MResearchFoundation(TAMRF)throughTAMUSponsoredResearchServices(SRS).
2.ExpeditionoperationsThissectionprovidesinformationonthefollowingaspectsofJRSOexpeditionsupport:• Planning(includinglogisticsandengineeringdevelopment);• Staffing(includingastaffingtableforexpeditionsunderwayduringthequarter);• Clearance,permitting,andenvironmentalassessmentactivities;• Expeditionoperations(includingasitemapforeachexpeditionunderwayduringthequarter,a
coringsummarytableforeachexpeditioncompletedduringthequarter,andpreliminaryscienceresultsforeachexpeditioncompletedduringthequarter);and
• Postexpeditionactivities(includingpostcruiseeditorialmeetings).
Table2.1.JRSOexpeditionschedule
ExpeditionPort
(origin) Dates1
Total days
(port/ sea)
Days at sea (transit2/
ops)Co-Chief Scientists
Expedition Project
ManagerNon-IODP(16November2019–3January2020)(48days) M.MaloneSouthPacificPaleogeneClimate(Site277)
378 Lautoka,Fiji 3January– 6February2020
34(3/31) 31(20/11) D.Thomas U.Röhl
L.Childress
DerrickRepair/DryDock Balboa,Pan-ama
25February– 30May2020
94(74/20)
20(20/0)
EngineeringTesting 384 Amsterdam,Netherlands
30May– 26June2020
27(2/25) 25(6/19) P.Blum
ReykjanesMantleCon-vectionandClimate
395 Reykjavík,Iceland
26June– 26August2020
61(5/56) 56(3/53) R.Parnell-Turner A.Briais
L.LeVay
Non-IODP(26August–5October2020)(40days) M.MaloneSouthAtlanticTransect1 390 RiodeJanei-
ro,Brazil5October– 5December2020
61(3/58) 58(13/45) R.Coggon J.Sylvan
E. Estes
WalvisRidgeHotspot 391 CapeTown,SouthAfrica
5December2020– 4February2021
61(5/56) 56(11/45) W.Sager K.Hoernle
K.Petronotis
AgulhasPlateau CretaceousClimate
392 CapeTown,SouthAfrica
4February–6April2021
61(5/56) 56(6/50) G.Uenzel-mann-Neben S.Bohaty
D.Kulhanek
SouthAtlanticTransect2 393 CapeTown,SouthAfrica
6April– 6June2021
61(5/56) 56(13/43) D.Teagle G.Christeson
T.Williams
Non-IODP(6June—2October2021)(118days) M.Malone
RioGrandeCone MethaneandCarbonCycling
394 Montevideo,Uruguay
2October– 2December2021
61(5/56) 56(5/51) TBD TBD
Notes:TBD=tobedetermined. 1Thestartdatereflectstheinitialportcallday.Thevesselwillsailwhenready. 2Preliminarytotalestimatedtransit(i.e.,toandfromoperationalareaandbetweensites).
5FY20 Quarterly Report 2
Expedition383:DynamicsofPacificAntarcticCircumpolarCurrentPostexpeditionactivities
TheExpedition383postcruiseeditorial,andsamplingpartieswereheld6–17JanuaryinCollegeStation,Texas.
Expedition385:GuaymasBasinTectonicsandBiospherePostexpeditionactivities
BecauseofCOVID-19restrictions,theExpedition385postcruiseeditorialmeetingwaspostponed.ThesamplingpartywillbeconductedbyJRSOwhenshelterinplaceordersarelifted.
Expedition378:SouthPacificPaleogeneClimate
Table2.2.Expedition378sciencepartystaffingbreakdown
Member country/consortium ParticipantsCo-Chief Scientists
USA:UnitedStatesScienceSupportProgram(USSSP) 9 1Japan:JapanDrillingEarthScienceConsortium(J-DESC) 2EuropeandCanada:EuropeanConsortiumforOceanResearchDrilling(ECORD)ScienceSupportandAdvisoryCommittee(ESSAC)
6 1
RepublicofKorea:KoreaIntegratedOceanDrillingProgram(K-IODP) 1People’sRepublicofChina:IODP-China 2AustraliaandNewZealand:Australia/NewZealandIODPConsortium(ANZIC) 1India:MinistryofEarthScience(MoES) 2Brazil:CoordinationforImprovementofHigherEducation(CAPES) 1
Clearance,permitting,andenvironmentalassessmentactivities
InaccordancewiththeNewZealandExclusiveEconomicZoneAct,theNoticeofCommencementandNoticeofCompletionFormsweresubmittedtotheNewZealandEnvironmentalProtectionAuthorityon15and25January,respectively.
6FY20 Quarterly Report 2
Figure2.1.Expedition378sitemap
Table2.3.Expedition378coringsummary
Site Hole Latitude Longitude
Water depth (mbrf)
Cores (N)
Interval cored (m)
Core recovered
(m)Recovery
(%)U1553 U1553A 52°13.4294’S 166°11.4801’E 1221.20 27 216.4 214.0 98.9
U1553B 52°13.4300’S 166°11.4964’E 1221.66 29 243.0 231.9 95.4U1553C 52°13.4412’S 166°11.4975’E 1221.63 43 333.5 158.8 47.6U1553D 52°13.4403’S 166°11.4796’E 1221.61 19 184.9 98.0 53.0U1553E 52°13.4409’S 166°11.4616’E 1221.26 27 237.6 209.8 88.3
Site U1553 totals 145 1215.4 912.4 76.6Expedition 378 totals 145 1215.4 912.4 76.6
Sciencesummary
Expedition378wasdesignedtorecoverthefirstcomprehensivesetofPaleogenesedimentarysectionsfromatransectofsitesstrategicallypositionedintheSouthPacificOceantoreconstructkeychangesinoceanicandatmosphericcirculation.ThesesiteswouldhaveprovidedanunparalleledopportunitytoaddcrucialnewdataandgeographiccoveragetoexistingreconstructionsofPaleogeneclimate.
7FY20 Quarterly Report 2
However,evaluationoftheJOIDES Resolutionderrickintheweeksprecedingtheexpeditiondeterminedthatitwouldnotsupportdeploymentofdrillstringsinexcessof2km.Becauseofthisdetermination,onlyoneoftheoriginallyapprovedfiveprimarysiteswasdrilled.
Expedition378recoveredthefirstcontinuouslycored,multiple-holePaleogenesedimentarysectionfromthesouthernCampbellPlateauatSiteU1553.Thishigh–southernlatitudesitebuildsonthelegacyofDeepSeaDrillingProject(DSDP)Site277,asingle,partiallyspot-coredhole,providingauniqueop-portunitytorefineandaugmentexistingreconstructionsofthepast~66Myofclimatehistory.Thisalsoincludesthediscoveryofanewsiliciclasticunitthathadneverbeendrilledbefore.
Astheworld’slargestocean,thePacificOceanisintricatelylinkedtomajorchangesintheglobalcli-matesystem.Previousdrillinginthelow-latitudePacificOceanduringOceanDrillingProgram(ODP)Legs138and199andIntegratedOceanDrillingProgramExpeditions320and321providednewinsightsintoclimateandcarbonsystemdynamics,productivitychangesacrossthezoneofdivergence,time-de-pendentcalciumcarbonatedissolution,bio-andmagnetostratigraphy,thelocationoftheIntertropicalConvergenceZone,andevolutionarypatternsfortimesofclimaticchangeandupheaval.Expedition378intheSouthPacificOceanuniquelycomplementsthisworkwithahigh-latitudeperspective,especiallybecauseappropriatehigh-latituderecordsareunobtainableintheNorthernHemisphereofthePacificOcean.
SiteU1553andtheentirecorpusofshore-basedinvestigationswillsignificantlycontributetothechal-lengesofthe“ClimateandOceanChange:ReadingthePast,InformingtheFuture”themeoftheIODPSciencePlan(HowdoesEarth’sclimatesystemrespondtoelevatedlevelsofatmosphericCO2?Howresilientistheoceantochemicalperturbations?).Furthermore,Expedition378willprovidematerialfromtheSouthPacificOceaninanareacriticalforhigh-latitudeclimatereconstructionsspanningthePaleocenetolateOligocene.
Expedition384:EngineeringTestingPlanning
OriginallypostponedinDecemberbecauseofthederrickmaintenanceandrepairrequirements,thesub-sequentpostponementofExpeditions387and388allowedtheJOIDES ResolutionFacilityBoard(JRFB)toutilizesomeofthepreviousExpedition387timeslottorescheduleExpedition384for30May–26June2020atanewtestsiteintheNorthAtlanticOcean.GiventhescheduleconstraintsandtheanticipateddrydockinAmsterdam,thebestopportunityfortheengineeringtestsistheExpedition395proposedSiteREYK-13A,pendingliftingoftravelCOVID-19travelrestrictions.
Expedition395:ReykjanesMantleConvectionandClimatePlanning
BecauseofthepostponementofExpedition388,theJRFBscheduledExpedition395intothetimeslotof26June–26August2020.BecauseoftheCOVID-19travelandsocialdistancerestrictionsandtheveryshortleadtimefromschedulingtoimplementation,anin-personprecruisemeetinginCollegeStation,Texas,wasnotfeasible.Instead,theprecruisemeetingtopicswillbecoveredinaseriesofvideoconfer-encingmeetings.
8FY20 Quarterly Report 2
Staffing
TwoinvitationstosailasCo-ChiefScientistwereissuedandaccepted.Acalltoapplywasissuedon6Marchforaverycondensedtimelinewithanapplicationdeadlineof30March.TheProgramMemberOffices(PMOs)willforwardapplicationstoJRSOby10April,andthesciencepartyisexpectedtobestaffedbytheendofApril.ThetwoOnboardOutreachOfficersfromExpedition388areinterestedinsailingonthisexpedition,buttheywillneedconfirmationfromtheCo-ChiefScientists.
Clearance,permitting,andenvironmentalassessmentactivities
JRSOworkedonanenvironmentalevaluationfortheuseofanacousticsourceduringawirelinecheckshotsurvey,andadraftwillbereadyby1June.
Expedition387:AmazonMarginPlanning
InlateFebruary,JRSOwasnotifiedthatleakswithsomeoftheJOIDES Resolutionthrustersealsrequiredtheshiptogointoadrydocktochangethesealsbeforeitcouldresumescienceoperations.ThedrydockcouldnottakeplaceuntilafterthederrickrepairsweresuccessfullycompletedattheendofApril.TheearliestdrydockavailabilityisinMay,makingitimpossibletoachievetheobjectivesofExpedition387.Therefore,theJRFBremovedExpedition387fromthescheduleuntilsuchtimethatitcanbeimple-mented(seeExpedition388clearance,below).
Clearance,permitting,andenvironmentalassessmentactivities
SeeExpedition388clearance,below.
Expedition388:EquatorialAtlanticGatewayClearance,permitting,andenvironmentalassessmentactivities
InFebruary,Brazilcommunicatedthatitwouldnotallowanexceptiontoadrillingbaninaninternalde-creegoverningmarinescientificresearch,despitepreviouslygrantinganexceptionforJOIDES Resolution operationsduringODPLeg155in1994.TheExpeditions387and388Co-ChiefScientists,proponents,andIODP-BrazilcontinuedtotrytodevelopanalternatepathwaytoallowExpeditions387and388tobeimplementedasscheduleduntil6March,whentheJRFBremovedExpedition388fromthescheduletoallowanotherexpeditiontobeimplementedinthatpartoftheschedule.Expeditions387and388arebackattheJRFBtoberescheduledwhenBrazilwillallowtheJOIDES Resolutiontoconductresearchintheirjurisdictionalwaters.
Expeditions390and393:SouthAtlanticTransect1and2Planning
AjointExpedition390/393Scientific ProspectuswaspublishedinFebruary.
Staffing
Thesecondroundofinvitationsweresentoutatthebeginningofthequarter,andspecialcallsforsedi-mentologyandinorganicgeochemistryweresuccessful.Therearecurrently22membersofthescience
9FY20 Quarterly Report 2
partystaffed,butstaffingfromBrazil,China,andAustraliaarependingresolutionofmemorandaofunderstanding(MOU)agreements.
Expedition391:WalvisRidgeHotspotPlanning
SeveralnewsiteswereapprovedduringtheFebruaryEnvironmentalProtectionandSafetyPanel(EPSP)meeting,andanupdatedoperationsplanisbeingrevised.AdraftoftheScientific Prospectuswasmadeavailableforinvitedscientiststoreview,andthefinalizedversionisexpectedearlynextquarter.
Staffing
Thefirstroundofinvitationsweresentout,and20scientistshaveaccepted.ParticipationfromBrazil,China,andAustraliaarependingresolutionofMOUagreements.Aspecialcallwassentout,andthepositionisbeingfinalized.TwoNamibianscientistswereinvitedtosailasobserversandacceptedtheinvitation.ThepositionforOnboardOutreachOfficerapplicationsarebeingreviewed.
Clearance,permitting,andenvironmentalassessmentactivities
TheExpedition391clearanceapplicationwasstartedandisplannedtobesubmittedtotheStateDepartmentearlynextquarter.
Expedition392:AgulhasPlateauCretaceousClimatePlanning
DepthextensionsfortwositesandaribbonatanothersitewereapprovedattheFebruaryEPSPmeet-ing;anupdatedoperationsplanisbeingrevised.
Staffing
Firstroundinvitationsweresentouton19March,andspecialcallsforpaleomagnetistandnannofossilpaleontologistsweresentout.ASouthAfricanscientistwasinvitedtosailasanobserver.
3.ManagementandadministrationManagementandadministration(M&A)activitiesincludeplanning,coordinating(withotherIODP-relatedentities),overseeing,reviewing,monitoring,assuringcompliancefor,andreportingonIODPactivities.
ProgressreportingTheJRSOoperationsandmanagementreportforthefirstquarterofFY20(October–December)wassub-mittedtoNSFon14February(http://iodp.tamu.edu/publications/AR/FY20/FY20_Q1.pdf).
LiaisonactivitiesJRSOreportstoandliaiseswithfundingagenciesandIODP-relatedagencies(e.g.,JRFB,JRFBadvisorypanels,PMOs,andothernationalorganizationsandfacilityboards)andparticipatesinfacilityboard,advisorypanel,andIODPForummeetings.Minutesfromthefacilityboardmeetingsareavailableonline(http://iodp.org/boards-and-panels/facility-boards).
10FY20 Quarterly Report 2
ProjectportfoliomanagementJRSObeganworkingontheQCDataViewerprojectandcontinuedworkontheGEODESC,DataPublishing,X-rayLinescanCoreImager(XSCAN),andCoreOrientationprojects.TheSampleMasterReplacementprojectremainedonhold.
GEODESCScope and deliverables
ThepurposeoftheGEODESCprojectistoreplacetheDESClogikIODPcoredescriptioninterface,withtheprincipalgoalofincreasingperformanceandreliability.TheGEODESCprojectproposestodesign,build,anddeliveranewandimprovedGEODESCtoolset.TheprojectmanagerisPeterBlum.
Status
TheprojectmanagementteamcompletedtheGEODESCprojectmanagementplanandbegantheproj-ectexecutionphaseinMarch2020.Thisprojectisnowscheduledforcompletioninlate2021.
DataPublishingScope and deliverables
ThepurposeoftheDataPublishingprojectistobuildaframework,tools,andprocessescapableofpub-lishingexpeditiondatasetsforlong-termrepositorystorageanddiscoveryofreferenceableinformation.Thisprojectwillalsosupportpublicationofdatafilesnotcurrentlyavailableonline.Whencompleted,allpublishedinformationwillbeavailableforsciencecommunityuseviaarespected,FAIR(findable,accessible,interoperable,andreusable)compliant,long-termscientificrepository.TheprojectmanagerisPaulFoster.
Status
Basedonfavorablefeedback,JRSOextendedthisprojecttouploadExpedition361,362,and366dataintoZenodo(https://zenodo.org).TheExpedition361datauploadiscomplete,andtheExpedition362and366uploadsareinprogress.
SampleMasterReplacementScope and deliverables
ThepurposeoftheSampleMasterReplacementprojectistoreplacetheSampleMasterapplicationwithamodularprogram.SampleMasterisanapplicationthatprovidesforallinitialIODPdataentryintotheLaboratoryInformationManagementSystem(LIMS)database.Thisinterfaceisusedacrosstheorganiza-tionbyawiderangeofpeoplewhofallintogroupsofusers,andthoseusersperformspecifictasks.TheprojectmanagerfortheCatwalkModuleisChiehPeng.
Status
TheSampleMasterCatwalkModulewasplacedonholdduringthisquarterpendingavailabilityoftes-ters.Thecompletiondateremainsopen.
11FY20 Quarterly Report 2
X-rayLinescanCoreImagerScope and deliverables
ThepurposeofthisprojectistodesignandfabricateastandaloneX-rayLinescanImager(XSCAN)toreplacetheprototypeX-rayimagerthathasbeeninusesinceExpedition379(AmundsenSeaWestAntarcticIceSheetHistory).Liketheprototype,theXSCANwillprovidethefundamental2-DX-rayimagesforscientiststoobservestructuresorobjectssuchasdropstones,lamination,shells,burrows,faults,andfracturesthatmightaidintheinterpretationofgeologicprocesses,depositionalsettings,en-vironmentalconditions,alteration,andtectonics.Similarly,itwillproduceimagesthatmightaidincoresplittingdecisionsaimedattargetingspecificmaterialforsamplingorminimizingdamagingordisturbingimportantstructuresorobjects.Unliketheprototype,XSCANwillbecapableofproducingline-scannedX-rayimagesofeachcoresectionthatcanbeviewedintheLIVEapplicationorusedforstratigraphiccorrelationorotheranalysessimilartotheimagesproducedbytheSectionHalfImagingLogger(SHIL).Additionally,XSCANwillbeabletorotatethesourceanddetectoraroundthecore,whichwillprovidedifferentangularviewsofstructureswithinthesectionsandcouldalsobeincorporatedintovolumeesti-matestobeusedtoimproveotherdatasets.TheprojectmanagerisMargaretHastedt.
Status
ThisprojectisscheduledforcompletionbyOctober2020.However,COVID-19iscausingdelaysinmate-rialsacquisitionandshipping.
CoreOrientationScope and deliverables
Thepurposeofthisprojectisto(1)developanewnonmagneticorientationtoolthatwillbedirectlyat-tachedtothecorebarreland(2)improvemethodsusedinaligningthecorelinerwithinthecorebarrel.Specifically,anewgyroscopicorientationtool(GOT)willbedevelopedinhousethatwillbeattacheddirectlytothecorebarrel,avoidingpossibleproblemswithmisalignmentbetweenthesinkerbarsandcorebarrel.BecausetheGOTdoesnotusethemagneticfieldfororientation,thelargemagneticfieldsassociatedwiththedrillstringareirrelevant.Toimprovethealignmentofthecoreliner,JRSOwillinvesti-gatewhetheritispossibletomodifytheadvancedpistoncorer(APC)corebarrelstoallowthecorelinertobealignedandattachedatbothendsofthecorebarrel.Currently,thetopofthelinerisorientedandattachedtothecorebarrelwithascrewbutthebottomofthelinerisfreetotwist,whichitmightdoassedimententerstheliner.TheprojectmanagerisSteveMidgley.
Status
ThisprojectisscheduledforcompletionbyJanuary2021.
QCDataViewerScope and deliverables
ThepurposeofthisprojectistodesignandimplementaQCviewerprogramtovisualizeQCdataac-quiredduringODPexpeditions.TheprojectmanagerisDavidHoupt.
Status
ThisprojectwasapprovedforprojectexecutioninMarch2020.
12FY20 Quarterly Report 2
4.SubcontractactivitiesJRSOcontinuedtointeractwithODLAStoensureefficientandcompliantoperationsoftheJOIDES Resolution.JRSOcontinuedtointeractwithSchlumbergerTechnologyCorporation(Schlumberger)toen-surethatwirelineloggingoperationsaboardtheJOIDES Resolutioncontinueinanefficientandcompliantmanner.JRSOandSchlumbergerworkedsuccessfullytostreamlinetravelandshippingactivities.
5.ScienceoperationsTheScienceOperations(SciOps)departmentprovidesscientific,operational,engineering,andlogisticalplanningandimplementationforJOIDES ResolutiondrillingexpeditionsinresponsetotheIODPscienceplanningstructure.JRSOisresponsibleforscoping,planning,managing,andimplementingscienceexpeditions(seeSection2);conductinglong-rangeoperationalplanningforout-yearJRSOexpeditions;providingservicesandmaterialsfortheplatformandoversighttodrillingandloggingcontractors;andutilizingIODPresourcestooverseeengineeringdevelopmentprojects.
ExpeditionoutreachsupportJRSOstafffacilitatedonboardoutreachactivitiesduringExpedition378.
6.TechnicalandanalyticalservicesTheTechnicalandAnalyticalServices(TAS)departmentdevelops,maintains,andoperatesadiversearrayofscientificequipmentforanalyzingcoresandcoresamples;staffstheshipboardlaboratorieswithskilledtechnicians;providessupportforshipboardscientists;assistswithdownholetoolsandmeasure-ments;andfacilitatesshipboardcorecuration,handling,andshipping.
MaintenanceperiodactivitiesDuringthetie-upoffBalboa,Panama,forExpedition387P(DerrickRepairs),thefollowingtaskswerecompleted:• InstalledanewP-wavevelocitycaliper(PWC)framethatwasdesignedatIODPandupdatedthe
PWCsoftware.ThechangeswereinitiatedtoreduceuncertaintiesinP-wavevelocitymeasurementsthoughttobecausedbyslightmisalignmentofthetransducersintheoldPWCframe.
• ModifiedthelayoutofthetablesintheCoreDescriptionareatoimprovetheuseofthespaceandtoprovideadditionaldesktopspaceandstorageshelvesforscientists.
• InstalledandtestednewlightsfortheSHIL.• RemovedolddeterioratingflooringintheCoreSplittingRoomandthensandedandpaintedthe
underlyingmetalfloorinpreparationforuseuntilnewflooringisinstalledduringanupcomingdrydock.
• EvaluatedpoorperformanceofQE-Procolorreflectancespectrometersanddeterminedthattwoofthesearefaultyandwillbereturnedtothevendorforrepairs.
• ReplacedafaultyCahnbalancewithaspare.
13FY20 Quarterly Report 2
AnalyticalsystemsX-rayLinescanCoreImager(XSCANproject)
TheXSCANProjectisintheprocessofreceivinglong–lead-timeitemsandthefinaldesignofthepro-tectiveradiationshieldingthatwillmaketheareaaroundthedevicesafeenoughtobeanuncontrolledspace(seemoreontheXSCANProjectinSection3,above).
ScanningElectronMicroscope—EnergyDispersiveSpectrophotometer(SEM-EDS)
TheNanoImagesSNE-4500Mscanningelectronmicroscope(SEM),equippedwithaBrükerXFLASH630Minienergydispersivespectrophotometer(EDS),wasinstalledonshore,andstaffhavebeguntheprocessofdefiningworkflowstoallowtheuploadofimagesanddatafromthedeviceintotheLIMSdatabase.ThissystemwillreplacetheHitachiTM-3000SEMontheship,andtheolderSEMwillbetrans-ferredtoCollegeStation,Texas,whereitwillbeavailableforusebyvisitingscientistsandstaff.
MagneticSusceptibilitymeters
TheBartingtonMS3magneticsusceptibilitymetersweredeliveredtothevessel,andworkisinprocesstointegratethemintothelaboratory.MS3meterswillbeinstalledontheWhole-RoundMultisensorLogger(WRMSL),SpecialTaskMultisensorLogger(STMSL),SectionHalfMultisensorLogger(SHMSL),andinthepaleomagnetismlaboratorytoruntheMS2Bdual-frequencydiscrete-samplesensorandasmall-diameterMS2Cloopsensor.
CHNSanalyzer
JRSOhaspurchasedanewThermoFlashSmartElementalAnalyzertoreplacetheagingFlashEA1112,whichhaddevelopedafractureinoneofitscombustionfurnaces.TheFlashSmartutilizesthesamecombustion,chromatography,andthermalconductivitydetectiontechniquesastheEA1112andwillalsoallowJRSOtousethesameconsumablesandsuppliesalreadyontheship.ThenewCHNSanalyzerwillbedeliveredthissummerforlaterinstallationonthevessel.
LaboratoryworkinggroupsThelaboratoryworkinggroups(LWGs)provideoversight,researchdirection,andqualityassuranceforthemethods,procedures,andanalyticalsystemsbothontheJOIDES Resolutionandonshore.Thegroupsmeetregularlytoreviewcruiseevaluations,expeditiontechnicalreports,andanyconcernsraisedbytheIODPIssuesManagementTeamandprovideadviceoncorrectiveactionsandpotentialdevelop-mentsforlaboratories.
CurationandCoreHandling
TheCurationandCoreHandlingLWGmetthisquartertodiscussandevaluateanumberofissues.• TheLWGwasinformedofthestatusoftheSampleMasterreplacementproject.Thefirstmodule
ofthenewsamplingsoftware(SamplePlanningTool,orSPLAT)willbeusedforupcomingsamplingpartiestoaidinplanningandselectingsampleintervals.
• AstandardoperatingproceduredocumentforshippingandreceivingcoresectionswillbeprovidedtootherinstitutionstoensurecoresarereturnedtoIODPundamaged.
14FY20 Quarterly Report 2
• TheLWGdiscussedspacelimitationsintheGulfCoastRepository(GCR)becausetherefrigeratedstorageareaisapproachingfullcapacity.AprojectteamwillbeassignedtodeterminethebestpathforwardtoexpandtheGCR’scapacity.
• TheLWGalsodiscussedreporteduserissueswiththeSampleandDataRequest(SADR)tool,anditwasdeterminedthataprojectneedstobesubmittedtoreplaceitinthefuture.
GeochemistryandMicrobiology
TheGeochemistryandMicrobiologyLWGmetthisquartertodiscussanyissuesarisingfromExpeditions383(noissuesreported),385,and378,aswellasongoingissues.
Expedition 385• TheLWGdiscussedthesuggestiontohaven-heptane(nC7)andiso-heptane(iC7)standards,as
wellasbranchedhydrocarbonstandards,aboardforexpeditionslike385,wherethesegasspecieswerefoundintheheadspacesamples.JRSOwilladdn-heptaneandiso-heptanetotheregulargasstandardmixesinthefuture.Othergasmixeswillbehandledonaby-expeditionbasisbecausetheadditionalcompoundsareusuallynotpresentinnormaldrillingoperations.
• TheLWGhadanextensivediscussionoftheoxygencontaminationproblemcausedbyfailureofthenitrogen(N2)generatorduringExpedition385,requiringthatonesiteberedrilled.ThecontaminationwascausedbythefailureofasolenoidvalveintheN2generatorthatwasnotinitiallydetected.TheN2generatorwasrepairedandservicedfollowingtheexpedition,andpreventiveactionsweretakentoensureN2qualityduringmicrobiologyexpeditions(e.g.,improvedO2 monitoringandcontinuingthepracticeofkeepingultra-high-purity(UHP)N2cylindersforbackup).
• TheLWGdiscussedreplacementand/ormodificationofthegloveboxesontheship.Asurveyofthemicrobiologycommunitywillbesentouttoinquireaboutthisaswellasotherspaceandequipmentneedsforthemicrobiologylaboratory.
• TheLWGdiscussedthepoorlightinginpartsofthemicrobiologylaboratory,andTASwillpurchaseLEDlightingstripstoenhancelightingincertainareas.
• TheLWGdiscussedtheproblemswiththeepifluorescencemicroscope(internalelectronicsfailureof20+yearoldscope),andTASwillbereplacingbothfluorescencescopesinthenearfuture.
• Acomplaintaboutexpiredsupplies,specificallyRHIZONsamplersfoundtobe“discolored,”wasaddressedbythemanufacturer,whostatedthattheychangedthegluetheyusebetweenthetwoinvolvedbatches;thedifferenceincolordoesnotindicateaproblem.
• TheLWGdiscussedtwoscientists’suggestionstoimprovetheKOACHcleanbenchperformance.ThefirstisthatJRSOobtainaportableairparticlecountertoensurethattheKOACHcleanbenchesaresetupandoperatingproperly.ThesecondistoaddanionizertotheKOACHassembly.TASwillpurchasebothoftheseandaddthemtotheequipmentavailableinthemicrobiologylaboratory.
Expedition 378• TheLWGdiscussedascientist’scommentaboutdelineationofresponsibilitiesbetweenthescientists
andthetechnicalstaff;theLWGdecidedthattheshipboardresponsibilitiesdocumentneedstobeupdated.
15FY20 Quarterly Report 2
Ongoing Issues• TheLWGdiscussedtheneedtoreplacetheThermoFlashEA1112CHNSanalyzerandendorsedthe
TASdecisiontopurchasetheThermoFlashSmartsystemmentionedabove.• TheLWGdiscussedtheneedtoupdatetheportableX-RayFluorescence(pXRF)instrumentonthe
shipwithanewermodelthatwillincreasesciencecapabilitybecausesomepXRFmodelsnow“see”sodiuminadditiontoheavierelements.Inaddition,theOlympusDELTAPremiumusesanobsoletecommunicationprotocolthathascausedlossofdataonatleastoneoccasion.TASwillresearchoptionsandaselectionwillbemadebytheLWGinthefuture.
• TheLWGdiscussedobtainingvariousEDSstandardstoassistinquantificationofSEM-EDSsamples.TheLWGrecommendedobtainingtheXCS-5EDSstandardandhandlingfurtherstandardspurchasedonaby-expeditionbasis.
• TheLWGdiscussedageneralneedtoredesigntheavailablemicrobiologyspaceandequipment(e.g.,hard-orsoft-shellanaerobicchambersandadditionalequipmentneeds),andanexternalsurveywillbecreatedtopollthecommunity.
Geology
TheGeologyLWGmetthisquarteranddiscusseditemsfromrecentexpeditionsaswellasongoingissues.
Issues arising from Expeditions 382, 383, 379T, 385T, 385, and 378• Coredescriptionareaspaceandlightingwereissuesofconcernwithanumberofscientists,andthe
LWGrecommendedthatTASinvestigatewhatcouldbedonetoimprovethesituation.• Thedepartmentcreatedseveralproposedlayoutsbymovingthetablesintomultiple
configurationsandfilmingmockcoreflowthroughthearea.Thedescriptionareawillberebuiltwithreorientedandredesignedtablestoimprovethespace.
• Lighting,however,isachallengebecauseofthelowceilingandthelackofanyadditionalspaceabovethedrop-downceilingtilesbecauseofductingandelectricalcabling.Existinglightinginthearea,includingself-illuminatingmagnifiers,isaboutasgoodaspossible.
• TheLWGdiscussedcomplaintsthatthecorelaboratoryandmicroscopelaboratoryairconditioningisextremelycold.TASwillinstallloggingthermometersintheseareastomonitorconditionsandpresentthefindingstotheshipoperatortoseewhatcanbedonetomitigatethis.
• TheLWGdiscussedtheneedtothoroughlyphotographhardrockcorematerialstakenbythemicrobiologistsfordestructivetestingsothereisarecordofwhatwasrecovered.TheLWGwillformaworkinggrouptodiscussthisbecauseithasalargerimpactthansimplyobtainingacamera;itimpactscuration,imaging/description,andmicrobiology.
• TheLWGtableddiscussionofSHILimageartifactsuntilthenewlightingisinstalledandfullytested.Itisexpectedthatthenewlightingwillalleviatereportedissues.
• TheLWGdiscussedpoorcolorrepresentationintheJPGimagescreatedbytheSHIL.Thisiscausedbytheneedtocreateausableimageforvariouspurposes(e.g.,printedVCDsheetsforhandwrittenannotation),sothegammaandcontrastvaluesfortheJPGsareoftenalteredfromthecolor-calibratedvaluessavedintheTIFFimagestocreateimagesmorepleasingtothehumaneye.TheJPGsareusedformanypurposesthatrequirethiskindofenhancementwhenthecoresareverydarkorverywhite.AsubcommitteeoftheLWGwillbeformedtodiscussthisandcomeupwithasolution.
16FY20 Quarterly Report 2
• TheLWGrequestedthattheSHILfilenamesforthebatchdownloaderbealteredtoallowthemtobesortedalphabeticallybyExp-Site-Hole-Core-Section;arecentchangetothebatchdownloaderaffixedserialnumbersaheadofthoseidentifiers.Thishasalreadybeenaddressedbythedevelopers.
• TheLWGdiscussedthepossibilityofaddingacentimeter-scalebartotheLIMSViewer(LIVE)tooldisplaybysomemechanism.TheLWGwillcreateateamtoexplorethiswiththedevelopergroup.
• TheLWGdiscussedmakingtheX-RayDiffraction(XRD)analysissoftwareavailableonmorecomputersinthelaboratorystack.TASwillexploremakingoneofthecopiesofMalvern-PanalyticalHighScoreanditsaccompanyingICDDXRDdatabaseavirtualinstallationthatcouldbeaccessedfromanycomputeronboard.
Ongoing Issues• TheLWGdiscussedtheneedtomakethereplacementepifluorescencemicroscopesalsocapable
ofdifferentialinterferencecontrast(DIC)becausethiscapabilityisimportantforsomemicrofossilapplications.
• TheLWGdiscussedseveralsuggestionstoimprovetheCorrelatorprogramforpossibleincorporationinthenextupgradetoCorrelator.
• TheLWGdiscussedthepossibilityofacquiringaFritschAnalysettesystemforsievingsamples,andTASwillinvestigatethis(possiblygettingahands-ondemonstrationforLWGmembers)andreportbackatthenextLWGmeeting.
Geophysics
TheGeophysicsLWGmetthisquartertodiscussissuesarisingfromrecentexpeditionsaswellasongoingissues.
AlloftheexpeditionswereveryappreciativeoftheX-rayImager,despitesomeworkflowchallengesthenewsystemcreated.TheadditionoftheX-raycapabilitygreatlyenhancedscienceaccordingtonumer-oussciencepartyparticipants.
Expedition 383• TheLWGdiscussedthemoistureanddensitybalances“nottaring”properlyduringtheexpedition,
something“corrected”bypoweringthebalancesdownandup.However,theactualtarevaluebetweenthetwobalancesdoesn’thaveacorrectvalueorrangeandisentirelyarbitrary.Thephysicalpropertiestechnicianswillbeinformedofthisandwillexplainthesituationtothescientistsinthefuture.
Expedition 379T• TheLWGdiscussedproblemswiththeOceanOpticsQEProcolorreflectancespectrometer.Twoof
thedeviceshaveelectronicsorcalibrationproblemsandwillbesenttothemanufacturer,andtheQEProonshorewillbesenttotheshiptoensurethereisanactivespare.
• TheLWGdiscussedthefailureofthesuperconductingrockmagnetometer(SRM)cryocompressor(eventuallytracedtocloggingofthecoolantlinewithdebrisfromtheship’schillwaterlines).ThesparecompressorwasinstalledandSRMmeasurementsresumed.TASisdiscussingwhethertoisolatethecryocompressorfromtheship’swaterbyacquiringaliquid-liquidHaskriscoolingunit.
17FY20 Quarterly Report 2
Expedition 385• TheLWGdiscussedmodificationofthehalf-spaceneedlesforthermalconductivitymeasurements
sothattheywillfitinsidethecoreliner.Usersarenotsatisfiedwiththepoorerprecision(~5%)ofthemini-proberelativetothenormal-sizedones(~2%).
• TheGiesaAutomatedVaneShearinstrumentfailed,andtheLWGdiscussedthepossibilitiesforrepairorreplacement,includingapurelymanualsystemliketheHumboltGeoVane.ThefinaldecisionwillbemadeatthenextLWGmeeting.
• TheLWGdiscussedtheextensivenumberofdownholetemperatureruns.Theadvancedpistoncorertemperaturetoolwasrun72times,andtheSedimentTemperature2toolwasrun25times.Inaddition,onetoolofeachtypewasmodifiedtomeasurehighertemperaturesthannormal(from55°Cto85°–90°C)byMikeMeiring(JRSOEngineer).Allofthemodifiedtoolswillbesenttoshoretoberesetandrecalibrated.
• TheLWGdiscussedthefailureofthedownholemagneticsusceptibilitysonde(MSS)tocommunicateatrig-up.TheSchlumbergerengineerrestoredonetooltofunction,buttheotherremainsdead.ThefailedMSSwillbereturnedtoheadquartersfortesting.
Ongoing Issues• TheLWGdiscussedtheongoingdevelopmentprojecttocreateaneworientationtool,aswell
asimprovementstotherig-floorpracticestotrytocorrecttheexistingcoreorientationtoolperformance.
7.Development,IT,andDatabasesTheDevelopment,IT,andDatabases(DITD)departmentmanagesdatasupportingIODPactivities,operatesandmaintainsshipboardandshore-basedcomputerandnetworksystems,andmonitorsandprotectstheJRSOnetworkandserverresourcestoensuresafe,reliableoperationsandsecurityforIODPdataandinformationtechnology(IT)resources.Additionalactivitiesincludemanagingexpeditionandpostexpeditiondata,providinglong-termarchivalaccesstodata,andsupportingJRSOITservices.
ExpeditiondataLIMSdatabase
DatafromExpedition378wereaddedtotheLIMSdatabaseonshorethisquarter.Thesedataarecur-rentlyundermoratoriumandavailableonlytothescientistswhosailedontheexpedition.Nodatawerereleasedfrommoratoriumduringthisquarter.
Expeditiondatarequests
ThefollowingtablesprovideinformationonJRSOwebdatarequestsfromthescientificcommunity.Wherepossible,visitsbyJRSOemployeeswerefilteredout.
18FY20 Quarterly Report 2
Table7.1.Top10countriesaccessingJRSOwebdatabases
Rank
Janus database LIMS database
CountryVisitor
sessions CountryVisitor
sessions1 USA 1,179 USA 1,0182 China 570 China 4423 UnitedKingdom 159 SouthKorea 2054 SouthKorea 108 Germany 1935 Canada 106 France 1696 Germany 101 UnitedKingdom 1557 France 91 Unknown 1358 Switzerland 67 Japan 1029 Unknown 57 Netherlands 9010 Italy 49 Canada 75
Others 446 Others 541Total 2,933 Total 3,125
Table7.2.Top20databasewebqueries
RankJanus database LIMS database
Query Views Query Views1 Images—corephotos 2,424 Images—corephotos 19,3302 Legsummaries 1,860 Samples 1,3973 Holesummaries 1,613 Images—LSimg 8224 Physicalproperties—GRA 1,501 Physicalproperties—PWL 7265 Coresummaries 1,490 Sectionsummaries 7066 Sitesummaries 1,390 Physicalproperties—GRA 6287 Samples 1,205 Holesummaries 6288 Physicalproperties—MSL 1,027 Coresummaries 4539 Images—primedataimages 987 Physicalproperties—MS 40710 Physicalproperties—Color 811 Physicalproperties—RSC 36211 Physicalproperties—MAD 786 Physicalproperties—MAD 27912 Physicalproperties—PWS 751 Chemistry—IW 26613 Physicalproperties—NGR 737 Chemistry—carbonates 23314 Physicalproperties—smearslidedata 684 Images—TSimage 23115 Chemistry—IW 651 XRD 22816 Chemistry—carbonates 650 Physicalproperties—NGR 21917 Physicalproperties—PWL 636 Physicalproperties—MSpoint 20318 PMAG 592 Expanded-LSimg 18019 Imaging-Closeups 578 XRF 17820 XRD 575 Chemistry—SRANL 167
Others 6,658 Others 3,259Total 27,606 Total 30,902
19FY20 Quarterly Report 2
Table7.3.DatarequeststotheTAMUDataLibrarianRequests Total Country Total
Howto 6 USA 11Photos 4 UnitedKingdom 3Holedata 2 Germany 1Depths 1 SouthKorea 1Descriptions 1 Spain 1Lithology 1 Yemen 1Physicalproperties 1Paleo 1VCD 1Total 18 Total 18
Networksystemsoperation,maintenance,andsecurityJRSOconfiguredandsuccessfullyplacednewOracleDatabaseAppliances(ODAs)intoserviceonshipandshore,providingcustomerswithvastlyimproveddataqueryperformanceandavailability.
8.CorecurationJRSOprovidesservicesinsupportofIntegratedOceanDrillingProgramandIODPcoresamplingandcura-tionofthecorecollectionarchivedattheGCR.
SamplingpartiesandcurationpoliciesandproceduresJRSOhostedtheExpedition383samplepartyheld11–18JanuaryintheGCR.Approximately30,000samplesweretakenduringthesampleparty.
Expedition385samplingwasstartedbyIODPstaffbecausetravelrestrictionsduetoCOVID-19preventedsciencepartyparticipation.Approximately1,100samplesweretakenbeforeallGCRsamplingwashaltedduetofurtherCOVID-19restrictionsandalocalstay-at-homeorder.
SampleandcurationstrategiesJRSOplannedsampleandcurationstrategiesthisquarterforJRSOExpedition378.
SamplerequestsandcoresamplingThefollowingtableprovidesasummaryofthe1,344samplestakenattheGCRduringthequarter.Samplerequeststhatshowzerosamplestakenmayrepresentcoresthatwereviewedbyvisitorsduringthequarter,usedforeducationalpurposes,orrequestedforX-rayfluorescence(XRF)analysis.Forpublicrelationsoreducationalvisits/tours,thepurposeofthevisitisshowninbracketsinthe“Samplerequestnumber,name,country”column,andnonumberisrecordedinthe“Numberofsamplestaken”columnifnonewsamplesweretaken.
20FY20 Quarterly Report 2
Table8.1.GCRsamplerequests
Sample request number, name, countryNumber of
samples takenNumber of
visitors77420IODP,Lazarus,Germany 25 77451IODP,Minton,UnitedKingdom 14 77565IODP,Markul,France 0 477577IODP,Aubry,USA 48 77554IODP,Yang,USA 9 77606IODP,Hickey-Vargas,USA 29 77459IODP,Lamyman,UnitedKingdom 31 77743IODP,Riesselman,NewZealand 45 77854IODP,Bhattacharya,USA 36 77986IODP,Crundwell,NewZealand 348 78085IODP,Zakharov,Switzerland 5 74247IODP,Moretti,Germany 154 78259IODP,Stolper,USA 15 78409IODP,Kim,USA 91 178184IODP,Misra,India 142 78636IODP,Smith,USA 6 78642IODP,vandeFlierdt,UnitedKingdom 1 078708IODP,Hess,USA 324 078718IODP,Michael,USA 17 078724IODP,Michael,USA 1 078892IODP,Li,Canada 49 078947IODP,O’Connell,USA Totals 13,447 5
UseofcorecollectionandeducationandoutreachsupportJRSOpromotesoutreachuseoftheGCRcorecollectionbyconductingtoursoftherepositoryandpro-vidingmaterialsfordisplayatmeetingsandmuseums.Therepositoryandcorecollectionarealsousedforclassroomexercises.JRSOpromotesoutreachuseoftheGCRcorecollectionbyconductingtoursoftherepositoryandprovidingmaterialsfordisplayatmeetingsandmuseums.Therepositoryandcorecollectionarealsousedforclassroomexercises.Duringthisquarter,theGCRhostedaFrench-basedvisualartist,AngelikaMarkul,whoisworkingonavideoinstallationexhibitthatincorporatesExpedition364:Chicxulub:DrillingtheK-PgImpactCrater.ThisworkwasdoneincollaborationwithExpedition364Co-ChiefScientistSeanGulick(UniversityofTexasatAustin).TheGCRalsohostedapublicrelationstourfortheTexasA&MUniversityOCEANSclubandwasusedforseveralhand-onexercisesforTAMUunder-graduateresearchclasses.
Table8.2.GCRtours/visitors
Type of tour or visitor Number of visitorsScientistvisitors 1Educationaltours/demonstrations(3) 0Publicrelationstours(8) 4Totals 5
21FY20 Quarterly Report 2
OnshoreXRFscanningDuringthisquarter,580coresectionswerescannedontheXRFattheGCR.Documentationrelatingtotheoperation,advancedconfigurations,maintenance,andtroubleshootingoftheXRFcanbefoundathttps://sites.google.com/scientific-ocean-drilling.org/xrf-iodp/home.
Table8.3.CoresectionsscannedRequest type Expedition, name, country XRF 1* XRF 2 SHIL WRMSL**
Program 385,ScienceParty,USA 0 462 0 0Program 383,ScienceParty,USA 0 64 0 0Program 382,O’Connell,USA 0 40 0 0Personal 113,O’Connell,USA 0 10 0 0Personal Non-IODP,vanHengstum,USA 0 4 0 0Totals 0 580 0 0
Notes:SHIL=SectionHalfImagingLogger,WRMSL=Whole-RoundMultisensorLogger.*XRF1iscurrentlyunavailableduetotechnicalissues(brokendoor).*TheWRMSLiscurrentlyunavailablebecauseitisservingasthedevelopmenttrackforanewX-raysystem.
9.PublicationservicesThePublicationServices(Pubs)departmentprovidespublicationsupportservicesforIODPriserlessandriserdrillingexpeditions(seeSection2)andediting,production,andgraphicsservicesforrequiredProgramreports(seeSection3),technicaldocumentation(seeSection6),andscientificpublicationsasdefinedintheJRSOcooperativeagreementwithNSF.ThePubsdepartmentalsomaintainslegacyaccessandarchivingofIntegratedOceanDrillingProgram,OceanDrillingProgram(ODP),andDeepSeaDrillingProject(DSDP)publications.
Scientificpublications
Table9.1.NewlypublishedcontentontheIODPPublicationswebsiteReports and publications JRSO USIO CDEX ESO
Scientific Prospectus
10.14379/iodp.sp.390393.2020
Preliminary ReportExpeditionReportsDataReports 10.14379/iodp.proc.369.201.2020
10.14379/iodp.proc.369.202.2020 10.14379/iodp.proc.372B375.203.2020 10.14379/iodp.proc.372B375.202.2020
WebservicesInadditiontointernalJRSOwebpageupdatesandadditions,newcontentisregularlyaddedtoIODPexpeditionwebpagesathttp://iodp.tamu.edu/scienceops/expeditions.html.
Duringthelastquarter,theIODPTAMUwebsitereceived334,611pageviewsand44,070sitevisitsandtheIODPPublicationswebsitereceived325,490pageviewsand22,552sitevisits.Wherepossible,visitsbyJRSOemployeesandsearchenginespiderswerefilteredoutofthecounts.VisitorstotheIODPTAMUwebsitecamefrommorethan228countries.
22FY20 Quarterly Report 2
Figure9.1.Top12countries/consortiaofvisitorstotheIODPTAMUwebsite
Notes:ECORD=EuropeanConsortiumforOceanResearchDrilling.ANZIC=Australia/NewZealandIODPConsortium. ECORDcountriesincludeAustria,Canada,Denmark,Finland,France,Germany,Ireland,Italy,Netherlands,Norway,Portugal,Spain,Sweden,Switzerland,andtheUnitedKingdom.
TheODPscienceoperator,ODPlegacy,andDSDPpublicationswebsitesarehostedatTAMU.Keydata,documents,andpublicationsproducedduringDSDPandODParepreservedintheselegacywebsitesthathighlightthescientificandtechnicalaccomplishmentsoftheseground-breakingprecursorstotheIntegratedOceanDrillingProgramandIODP.Theselegacywebsitescontaindownloadabledocu-mentsthatcoverawidespectrumofPrograminformation,fromlaboratoryandinstrumentmanualstoProgramscientificpublications,journals,andeducationalmaterials.
Table9.2.LegacywebsitestatisticsLegacy website FY20 Q2 page views* FY20 Q2 site visits*
www-odp.tamu.edu 175,827 22,409www.odplegacy.org 4,246 2,203www.deepseadrilling.org 33,558 5,734Total 213,631 30,346
*Wherepossible,visitsbyJRSOemployeesandsearchenginespiderswerefilteredout.
PublicationscoordinationDatareportsrelatedtoExpeditions338,341,353,354,361–364,and369werereceived,senttopeerreview,accepted,and/orpublishedthisquarter.
DiscoveryandaccessibilityDigitalobjectidentifiers
IODPisamemberofCrossRef,theofficialdigitalobjectidentifier(DOI)registrationagencyforscholarlyandprofessionalpublications.AllIODPscientificreportsandpublicationsareregisteredwithCrossRefandassignedauniqueDOIthatfacilitatesonlineaccess.CrossReftracksthenumberoftimesapublica-tionisaccessed,orresolved,throughtheCrossRefDOIresolvertool.Programstatisticsforthereportingquarterareshowninthetablebelow.
23FY20 Quarterly Report 2
Table9.3.NumberofonlineDOIresolutions
Reports and publicationsDOI
prefixJanuary
2020February
2020March 2020
FY20 Q2 total
IODP 10.14379 4,475 3,508 4,008 11,991IntegratedOceanDrillingProgram 10.2204 6,004 3,947 3,464 13,415ODP/DSDP 10.2973 22,594 14,774 18,246 55,614
ScienceOpen
IntegratedOceanDrillingProgramandIODPexpeditionreportsanddatareportsareindexedatScienceOpen.JRSOdepositeddatareportsfromVolumes317,339,and341intoScienceOpenthisquarter.
Table9.4.ScienceOpenProceedings of the International Ocean Discovery Programcollectionstatistics(https://www.scienceopen.com/collection/IODP_Publications)
Period Articles added Article viewsAltmetric score
(collection)Number of
authorsReferenced
articlesTotalFY19 712 8,382 171 1,745 8,377FY20Q1 16 658 187 1,793 302FY20Q2 3 498 189 1,800 9Total to date 731 9,498 — — 8,688
Table9.5.ScienceOpenScientificOceanDrillingExpeditionResearchResultscollectionstatistics(https://www.scienceopen.com/collection/8b0582f6-47bf-4988-b90a-8533135e6fcc)
Period Articles added Article viewsAltmetric score
(collection)Number of
authorsReferenced
articlesTotalFY19 4,196 13,340 22,630 10,505 40,473FY20Q1 181 771 24,698 10,912 2,172FY20Q2 0 0 24,912 10,912 9Total to date 4,377 14,111 — — 42,645
Altmetric.com
JRSOcontributespublicationsmetadatatoTAMU’sSymplecticElementsdatabase,whichfeedsdatatohttp://altmetric.com,aplatformthatenablesmonitoringoftheonlineactivitysurroundingaca-demicresearch.Thisquarter,JRSOuploadedDOIsofIntegratedOceanDrillingProgramdatareportsforExpeditions339and341.
LegacyactivitiesCloseout
IntegratedOceanDrillingProgrampublicationscloseoutactivitiescontinuedduringthereportingperiod.DatareportspublishedduringthequarterintheProceedings of the Integrated Ocean Drilling Program arelistedabovein“Scientificpublications.”Inaddition,peer-reviewedpostcruiseresearchresultpubli-cationsrelatedtoExpeditions302,303/306,320/321–323,325,327,333,336,338,339,341–343/343T,346,347,and349wereaddedtothepublicationsdatabase.
24FY20 Quarterly Report 2
Publicationsarchiving
ThemainIODPpublicationswebsite(http://publications.iodp.org/index.html),whichincludesfullcon-tentfromallIntegratedOceanDrillingProgramandIODPvolumes,andotherpublicationspages(http://iodp.tamu.edu/publications)arearchivedattheInternetArchive,along-termarchivespecializinginfullwebsitebackups.Quarterlycrawlsincrementallyupdatethearchivewithnewfiles,whichincluded71,231newdocuments(141.4GB)forthisquarter.Inaddition,thearchivehouseslegacypublicationssitesforDSDPandODP,foragrandtotalof1.3TBofdataand6,942,821documents.Thearchivecanbeviewedathttps://archive-it.org/collections/9148.
CitationmanagementIODPPubscontractswiththeAmericanGeosciencesInstitute(AGI)tomaintaintheScientificOceanDrillingCitationDatabase,asubsetoftheGeoRefdatabasethatcontainsmorethan35,000recordsforProgram-relatedscientificoceandrillingpublicationsfrom1969tothepresent.Thisquarter,IODPPubssent143expedition-relatedpublicationcitationsforconsiderationforinclusioninthedatabase.
Table9.6.ScientificOceanDrillingBibliographicDatabasestatisticsProgram-related
publicationsJanuary
2020February
2020March 2020
FY20 Q2 total
Searches 303 139 512 954Citationviews 481 522 548 1,551
IODPPubsalsomaintainsacurrentPDFlistofpublicationsandconferencepresentations/abstractsau-thoredbyJRSOstaffandResearchInformationSystems(RIS)-formatcitationdatalistsforIODPprogrampublicationsandstaff-authoredjournalarticles(http://iodp.tamu.edu/staffdir/indiv.html).RISisastan-dardizedtagformatthatenablescitationprogramstoexchangedata.UserscancopythecontentoftheRISfilesandimportitintomostbibliographicsoftware.RIS-formatcitationdatalistsarealsoavailableforexpedition-relatedbibliographiesforExpeditions349–388.TheIODPprogrampublication,JRSOstaff-au-thored,andexpedition-relatedbibliographylistsareupdatedquarterly.
AbstractsauthoredbyJRSOstaff
AbstractsofconferencepresentationsduringthisquarterauthoredbyJRSOstaffincludethefollowing.BoldtypeindicatesJRSOstaff(http://iodp.tamu.edu/staffdir/indiv.html).
American Geophysical Union (AGU) Chapman Conference 2020 Bova,S.C.,Rosenthal,Y.,Holbourn,A.E.,Linsley,B.K.,andKulhanek, D.K., 2020.Orbital-scalevariabilityinWesternPacificWarmPoolrainfalloverthelast1.5My[presentedattheAmericanGeophysicalUnion2020ChapmanConference,Washington,DC,5–9January2020].https://agu.confex.com/agu/20chap-man1/meetingapp.cgi/Paper/658583
AGU Ocean Sciences Meeting 2020 Estes, E.R.,Berti,D.,Findlay,A.,Hochella,M.F.,Yücel,M.,andLuther,G.W.,2020.Differentialbehaviorofmetalsulfidesinhydrothermalplumesanddiffuseflows[presentedattheAmericanGeophysicalUnion2020OceanSciencesMeeting,SanDiego,CA,16–21February2020].https://agu.confex.com/agu/osm20/meetingapp.cgi/Paper/651870
25FY20 Quarterly Report 2
Geological Society of America South Central Meeting 2020 Tatge,E.,Kulhanek, D.K.,andActon, G.D.,2020.PleistocenecalcareousnannofossilassemblagesfromtheMozambiqueChannel.Geological Society of America Abstracts with Programs,52:23-10.https://doi.org/10.1130/abs/2020SC-343777
ArticlesauthoredbyJRSOstaff
Program-relatedscienceandotherarticlesauthoredbyJRSOstaffpublishedduringthisquarterincludethefollowing.BoldtypeindicatesJRSOstaff.OtherProgram-relatedsciencearticlesareavailableon-linethroughtheScientificOceanDrillingBibliographicDatabase(http://iodp.tamu.edu/publications/bibliographic_information/database.html)andtheIODPexpedition-relatedbibliographies(http://iodp.tamu.edu/publications/citations.html).• Barnes,P.M.,Wallace,L.M.,Saffer,D.M.,Bell,R.E.,Underwood,M.B.,Fagereng,A.,Meneghini,F.,et
al.(includingK.E. PetronotisandL.J. LeVay),2020.Slowslipsourcecharacterizedbylithologicalandgeometricheterogeneity.Science Advances,6(13):eeay3314.https://doi.org/10.1126/sciadv.aay3314
• Dailey,S.K.,Clift,P.D.,Kulhanek, D.K.,Bulsztajn,J.,Routledge,C.M.,Calves,G.,O’Sullivan,P.,etal.,2020.Large-scalemasswastingontheMiocenecontinentalmarginofwesternIndia.GSA Bulletin,132(1–2):85–112.https://doi.org/10.1130/B35158.1
• Fryer,P.,Wheat,C.G.,Williams, T.,Kelley,C.,Johnson,K.,Ryan,J.,Kurz,W.,etal.,2020.Marianaserpentinitemudvolcanismexhumessubductedseamountmaterials:implicationsfortheoriginoflife.Philosophical Transactions of the Royal Society, A: Mathematical, Physical and Engineering Sciences,378:20180425.https://doi.org/10.1098/rsta.2018.0425
• Hull,P.M.,Bornemann,A.,Penman,D.E.,Henehan,M.J.,Norris,R.D.,Wilson,P.A.,Blum, P.,etal.,2020.OnimpactandvolcanismacrosstheCretaceous–Paleogeneboundary.Science,367(6475):266–272.https://doi.org/10.1126/science
26FY20 Quarterly Report 2
Appendix:JRSOquarterlyreportdistributionJ.Allan,NSF,USA,[email protected]
T.Kashmer,NSF,USA,[email protected]
D.Thomas,TexasA&MUniversity,USA,[email protected]
C.Neal,JRFBChair,UniversityofNotreDame,USA,[email protected]
L.Armand,JRFBMember,TheAustralianNationalUniversity,Australia,[email protected]
B.K.Bansal,JRFBMember,MoES,India,[email protected]
S.Bohaty,JRFBMember,UniversityofSouthampton,UnitedKingdom,[email protected]
G.Camoin,JRFBMember,EuropeanManagementAgency,CEREGE,France,[email protected]
M.Godard,JRFBMember,UniversityofMontpellier,France,[email protected]
B.John,JRFBMember,UniversityofWyoming,USA,[email protected]
G.Y.Kim,JRFBMember,KIGAM,Korea,[email protected]
L.Krissek,JRFBMember,OhioStateUniversity,USA,[email protected]
Z.M.D.Martins,JRFBMember,CAPES,Brazil,[email protected]
Y.Sun,JRFBMember,MOST,China,[email protected]
R.Tada,JRFBMember,ChibaInstituteofTechnology,Japan,[email protected]
D.Kroon,JRFBLiaison,IODPForumChair,UniversityofEdinburgh,[email protected]
S.Davies,JRFBLiaison,UniversityofLeicester,UnitedKingdom,[email protected]
H.Given,JRFBLiaison,IODPSupportOffice,ScrippsInstitutionofOceanography,USA,[email protected]
S.Gulick,JRFBLiaison,SEPCo-Chair,EastCarolinaUniversity,[email protected]
B.Katz,JRFBLiaison,EPSPChair,ChevronCorporation,USA,[email protected]
S.Kuramoto,JRFBLiaison,MarE3/JAMSTEC,Japan,[email protected]
L.McNeill,JRFBLiaison,SEPCo-Chair,UniversityofSouthampton,UK,[email protected]
N.Seama,JRFBLiaison,ChikyuIODPBoardChair,KobeUniversity,Japan,[email protected]
G.Uenzelmann-Neben,JRFBLiaison,ECORDFacilityBoardChair,AlfredWegenerInstitute,Germany,[email protected]