virtual microscopy in hematology: experiences from …...2009/03/26 · questions – answers...
TRANSCRIPT
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Virtual Microscopy in Hematology:experiences from the Belgian EQA
Bernard CHATELAINU.C.L. Mont-Godinne
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External Belgian Quality Control in hematomorphology
• 3 times a year• Unstained slide fixed in methanol
– Laboratory staining procedure• Software on CD-ROM
– Wide-field to evaluate red blood cells and plateletsmorphologies
– 210 pictures of nucleated cells to establish a WBC differential count
– Clinical information about the case– Calibration procedure and virtual normal smear (105
pictures)
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Smears: Blood 28 / Bone Marrow 2
Hairy Cell Leukemia, t(8;21) AML (didactic)2009 MarchT Prolymphocytic leukemia, MDS Ider20Q (didactic)2008 NovemberSecondary ALL, BiN Polyclonal Hyperlymphocytosis (didactic) 2008 JuneNormal, TTP2008 MarchNormal, Hairy Cell Leukemia2007 November
Normal, Reactive Lymphocytosis2007 JuneNormal, CML2007 MarchB12 deficiency, Secondary leukemia(didactic) (bone marrow aspirate)Myeloma, Chediak-Higashi (didactic)2006 NovemberNormal, Drepanocytosis, May Hegglin (didactic) 2006 JuneNormal, B12 deficiency2006 March Normal, Secondary leukemia2005 NovemberNormal, Hereditary Spherocytosis2005 JuneNormal, B Prolymphocytic Leukemia2005 MarchALL2004 November
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November 2004
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March 2005
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June 2006
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November 2006
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May 2008
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May 2008
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How to reach the”high quality”microscope image
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How to reach the”high quality”microscope image
• Colors
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R + B = M (magenta)R + B = M (magenta)
R + V = Y (R + V = Y (yellowyellow))
B + V = C (cyan)B + V = C (cyan)
WhiteWhite
RR MMBB
CCYY
GG
RGB colors
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Retina photoreceptors >>> CCD
• Retina: – L cones (Large) => Red (600 à 700 nm)
– M (Medium) => Green (500 à 600nm)
2X more frequent– S cones (Short) => Blue (400 à 500nm)
• CCD: 1R / 2G / 1B
ConeCone
RodRod
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How many levels for a smoothfeeling?
2277 = 128= 128
2288 = 256= 256
200
2277 = 128= 128
2288 = 256= 256
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RGB
G
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How to reach the”high quality”microscope image
Gamma = brightness and contrast
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Gamma dynamic range:eye 24 IL >< CCD 8 IL
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Gamma curve correction
• Increase dynamicrange for darkobject
• But request more than 3 X 8 bit colordefinition (Olympus DP 71: 11)
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How to reach the”high quality”microscope image
• Image resolution
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Based on optical resolution you can calculate how many pixels you need!
X N.A. L x 2.3 B x 2.30.5 0.025 3265 2458
1 0.05 3265 24582 0.1 3265 24584 0.2 3265 2458
10 0.45 2913 219320 0.75 2444 184040 0.95 1525 114840 1 1623 122260 0.95 1017 76560 1.4 1486 1119
100 1.4 1486 1119Magnification
Numerical Aperture
Image pixels
density
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Obj. 100 XNA 1.4
Obj. 40 XNA 1.3
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Obj. 100 XNA 1.4
Obj. 40 XNA 1.3
+ resampling and accentuation (g=126; r=3.6; s=3.0
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How to reach the”high quality”microscope image
• Size of the picture
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Wide field Image
Stitching of 80 images (100 x)
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Obj. 40 XNA 1.3
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Material and methods
• Olympus PROVIS system– Olympus AX-70 microscope with autofocus and XYZ
• Camera– Olympus DP71– DP manager for image acquisition
• Home made software for wide field capture• Stitching unlimited (Realviz) to merge pictures• Adobe Photoshop for image editing• Stitching software for wide-field elaboration
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www.zoomify.com
PID=Pixel On Demand
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Today maximum size of the digitized field by manual technique
Full resolution image (N.A.=1,4 100X equiv)3 mm / 2 mm
Low resolution image (N.A.=0,4 15X equiv)15 mm / 10 mm
Limit is related to the size of the TIF picture (1Gb). And the size of the computer RAM for post stitching correction.
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Virtual scan www.aperio.com
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Olympus Dotslide1 slide= 50 Gb
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Z-Axis
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CombineZ picture
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CombineZ picture
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Global appreciation of the CD-ROM for the first and second QCs
General appreciation of the software and the virtual slide
0
20
40
60
80
100
120
Bad Less good Good to very good
Appreciation against actual smear
%ag
e of
labo
rato
ries
2004-3
2005-1
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Evaluation of both methods on 5 consecutive assays
-7,50-8,7116124,7Other cells
-5,41-10,4192,1202,5Blast cells
5,0012019Monocytes
3,855130125Lymphocytes
0,00088Polynuclear eosinophils
7,3510136126Polynuclear neutrophils +
Band cells
13,041,6512,6511Band cells
4,155,2125,2120Polynuclear neutrophils
Virtualsmear
Actualsmear
Relative error (%)
Diff (Virtual -Actual)
Median (total of 5 surveys)
Cell types
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Actual and virtual smears : diagnosis accuracy for 5 surveys
Diagnosis Accuracy : Comparison between actual and virtual smears
0
10
20
30
40
50
60
70
80
90
100
2004-3 2005-1 2005-2 2005-3 2006-1
Survey
Dia
gnos
is a
ccur
acy
(%)
Actual smear
Virtual smear
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H/6916H/6916 MayMay--HegglinHegglin
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H/7100H/7100 ChediakChediak--HigashiHigashi
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H/7100H/7100 MDS ider20qMDS ider20q
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H/9353H/9353
AML t(8;21)AML t(8;21)
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H/7597H/7597 CMLCML
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Mai 2008
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Bone marrow virtual smeal
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We will try to optimize our materialregarding your precious remarks
and evaluations
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Authoring Tool For The External Quality
Assessment
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1. State of the art
Questions – answers mapping(ex. hematology : cell by cell analysis)
No questions - answers mapping
Answers inside the system(answers analysis possible)
Answers outside the system(paper, web forms)
Composition autonomyDependence on a developper
Any domainOne domain
Offline - OnlineOffline
Content managed by the expertsContent management delegated to a developper
JavaFlash
AFTERBEFORE
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2. Content Logical Representation
• Content Transmission Scheme
The experts ofa domain
AuthoringTool
LogicalContentLaboratories
??
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3. Content Manifestation
• Content Transmission Scheme
The experts ofa domain
AuthoringTool
LogicalContent
Laboratories
OK
ContentManifestation
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4. Transformations (Scenario Application)Structured Datas Datas Manifestation (full or partial) Datas Presentation
GeneralLogicalContent
AdaptedLogicalContent
Target Independant Target Specific
Adaptation Transformations Presentation Transformations
XML file XML file
XSL
XML
HTML
FO
SMIL
. . .
TEXT
PS
. . .
Smi
Program
Browser
Applet
XSL
XSL
XSL
XSL
XSL
PDF reader
Text Editor
Printer
Presentation
. . .
. . .FOP
Pro
cess
ing
SM
ILE
ngin
e
Spat
ial
Dim
ensi
on
Spat
io–
tem
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In
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eD
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sion
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Don’t forget the limitation of classical microscopic slides!
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ReagentsSorensen Phosphate Buffer pH 6.8 : Na2HPO4.2H2O M/15 (2.56 g/l) and KH2PO4M/15 (6.63 g/l)
Buffered water : dilution 1/20e of Sorensen Phosphate Buffer in distilled water
May-Grünwald solution
Giemsa solution
StainingMethanol 10 minutes
Pure May-Grünwald solution 5 minutes
May-Grünwald (50/50 in buffered water buffer pH 6.8) 2-3 minutes
Giemsa (1/10 in buffered water pH 6.8) 15 minutes
Rinse with running water
Buffered water pH 6.8 30 seconds
Let dry smears upright
Guidelines for blood smear preparation and staining procedure for setting up an external quality assessment scheme for blood smear interpretation. Part I: control material (EQALM), J-L Vives Corrons, S. Albarède, G. Flandrin, S. Heller, K. Hovarth, B. Houwen, G. Nordin, E. Sarkani, M. Skitek, M. Van Blerk, J-C. Libeer, Clin Chem Lab Med, 2004, 42(8):922-926
Adapted from EQLAM MGG staining recommandations
EQALM : External Quality Assurance Programmes in Laboratory Medecine
Don’t adjustthe pH of the
bufferedwater!
Check the pH of the
Sorensen buffer!
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1 : Darkness + Turbovac 800s (vacuum + N2) + Room temperature2, 3, 4, 5 : Darkness + Room temperature
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Stainability alteration during the smear storage
Turbovac (800s)
1. Packaging of the opaque box containing smears in a plastic bag2. 98-99 % vacuum3. Nitrogen gas injection4. Heat closure of the plastic bag5. Storage at room temperature
Oxygen depletion + N2 injection
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Immediate staining
H/6517 (+ Turbovac)H/2654 (- Turbovac)
MGG staining
Staining after 1 ½ month
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e-Hematimage.eu50 belgian participants/more than
2500 around the world
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many thanks for theircontribution to
Marc ChatelainYvan Cornet
Agathe DebliquisDamien DenizzaHubert Meurisse
Jan PhilippéJérôme Pruvot
Marjan Van Blerk and the hematology expert comiteeJean-Claude Libeer