web-based display of 3d data with the interactive embryo ... · web-based display of 3d data with...

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Web-based display of 3D data with the Interactive Embryo Viewer (IEV) OMERO User Meeting, Dundee, Scotland May 31 st 2016 Henrik Westerberg, Team Leader, Systems Imaging Group James Brown Neil Horner Jennifer Vibert Ann-Marie Mallon, BioComputing, MRC Harwell

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Page 1: Web-based display of 3D data with the Interactive Embryo ... · Web-based display of 3D data with the Interactive Embryo Viewer (IEV) OMERO User Meeting, Dundee, Scotland May 31st

Web-based display of 3D data with the Interactive Embryo Viewer (IEV) OMERO User Meeting, Dundee, Scotland May 31st 2016

Henrik Westerberg, Team Leader, Systems Imaging Group James Brown Neil Horner Jennifer Vibert Ann-Marie Mallon, BioComputing, MRC Harwell

Page 2: Web-based display of 3D data with the Interactive Embryo ... · Web-based display of 3D data with the Interactive Embryo Viewer (IEV) OMERO User Meeting, Dundee, Scotland May 31st

Dissemination of 3D image data on the web

Page 3: Web-based display of 3D data with the Interactive Embryo ... · Web-based display of 3D data with the Interactive Embryo Viewer (IEV) OMERO User Meeting, Dundee, Scotland May 31st

International Mouse Phenotyping Consortium (IMPC) www.mousephenotype.org

Page 4: Web-based display of 3D data with the Interactive Embryo ... · Web-based display of 3D data with the Interactive Embryo Viewer (IEV) OMERO User Meeting, Dundee, Scotland May 31st

MRCHarwellMysqldatabasedefineddirectorystructure

2D3D

Bio-formats

Page 5: Web-based display of 3D data with the Interactive Embryo ... · Web-based display of 3D data with the Interactive Embryo Viewer (IEV) OMERO User Meeting, Dundee, Scotland May 31st

Interac8veEmbryoViewer(IEV)

•  Rapidandintui8veaccessintothedata•  DevelopedinJavascript,2D/3DsupportprovidedbyXTK•  IntegratethedisplayintoOMERO

Page 6: Web-based display of 3D data with the Interactive Embryo ... · Web-based display of 3D data with the Interactive Embryo Viewer (IEV) OMERO User Meeting, Dundee, Scotland May 31st

Annota8onsMockupwithinIEV

•  Linksregionsofinteresttoontologies(EMAP-PATO)

•  Foundthroughahighthroughputimageanalysispipeline

Page 7: Web-based display of 3D data with the Interactive Embryo ... · Web-based display of 3D data with the Interactive Embryo Viewer (IEV) OMERO User Meeting, Dundee, Scotland May 31st

New:3Dmodereleasedtolive

hUp://www.mousephenotype.org/embryoviewer/?gene_symbol=Klf7&v=3d

Adaptive Display Algorithmfor Interactive Frame Rates

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