01 sunhpc welcome
DESCRIPTION
_SunHPC_WelcomeTRANSCRIPT
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1 SunHPC 2007 - Introduction Center forComputing and Communication
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SunFire E6900 Cluster
SunFireSunFire E6900 E6900 ClusterCluster
SunFire E25K CPU and IO boardsSunFireSunFire E25K E25K CPU and IO boardsCPU and IO boards
FC-AL SwitchFCFC--AL SwitchAL Switch
SunFire E25KCluster
SunFireSunFire E25KE25KClusterCluster
SunFire V40z ClusterSunFireSunFire V40z ClusterV40z Cluster
HPC @ RZ.RWTH-AACHEN.DE
Sun Fire T2000Sun Fire T2000
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Agenda - OverviewMondayMarch 12
TuesdayMarch 13
WednesdayMarch 14
TuesdayMarch 15
FridayMarch 16
9:00 10:30 Serial Performance
Shared Mem Parallelization
Tools Tuning Workshop
10:30 11:00 coffee break
11:00 12:30 Serial Performance
Shared Mem Parallelization
Tools Tuning Workshop
12:30 14:00 lunch (Mensa Vita) - 20 min. walk or bus shuttle
14:00 15:30 Shared Mem Parallelization Lab /Tuning Workshop
Tuning Workshop
15:30 16:00 coffee break
16:00 17:30 Shared Mem Parallelization Lab /Tuning Workshop
Tuning Workshop
19:00 Social dinnerrest. "Kazan"
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Compute Cluster RWTH Aachen
#nodes modelprocessor
type #procs #cores #threadsclock [MHz]
memory [GB] network
accumulated performance
[TFLOPS]
accumulated memory
[TB]
4 SF E25K UltraSPARC IV 72 144 144 1050 288Gigabit Ethernet
Fire Link 1.21 1.15
16 SF E6900 UltraSPARC IV 24 48 48 1200 96Gigabit Ethernet
Fire Link 1.84 1.548 SF E2900 UltraSPARC IV 12 24 24 1200 48 Gigabit Ethernet 0.46 0.381 SF T2000 UltraSPARC T1 1 8 32 1000 8 Gigabit Ethernet 0.0001 0.01
64 SF V40z Opteron 848 4 4 4 2200 8 Gigabit Ethernet 1.13 0.51
4 SF V40z Opteron 875 4 8 8 2200 16Gigabit Ethernet
Infiniband 0.14 0.06
2 SF X4600 Opteron 885 8 16 16 2600 32 Gigabit Ethernet 0.17 0.06
9 Dell 1950Xeon 5160
(Woodcrest) 2 4 4 3000 8Gigabit Ethernet
Infiniband 0.22 0.07108 sum 1042 1833 1857 5.16 3.79
Compute Cluster der RWTH AachenFeb 07
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Overview over HPC Tools
Current program development environment for HPC on the Sun UltraSPARC and Opteron/Xeon systems at the RWTH 4 platforms :
1. SPARC/Solaris 9/10, 64bit2. Opteron/Solaris, 64 bit3. Opteron/Linux and Intel/Linux, 64 bit4. Opteron/Windows and Intel/Windows, 64 bit
serial programming, shared memory parallelization, message passing
compilers / MPI libraries, debugging tools, performance analysistools
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Programming EnvironmentCompilers + Debugging Tools
Company Compiler Version Language OpenMP support Autopar DebuggerRuntime Analysis
US IV
Lin Win Lin Win
Sun Studio 11 F95/C/C++ F95/C++ F95/C++ dbxsunstudio
analyzer, collect,
er_print, gprof
X X
Sun Studio 12 F95/C/C++ F95/C++ F95/C++ dbxsunstudio
analyzer, collect,
er_print, gprof
X X X X
Intel V9.1 F95/C++ F95/C++Threading Tools F95/C++ idb vtune X X vtune vtune
Intel V10.0 beta F95/C++ F95/C++Threading Tools F95/C++ idb vtune X X vtune vtune
Intel Guide V4.0 F90/C/C++ F77/F90/C/C++Assure F77/F90/C/C++ GuideView X
GNU V4.0 F95/C++ gdb gprof X X X XGNU V4.2 beta F95/C++ F95/C++ gdb gprof X XPGI V6.1 F77/F90/C/C++ F77/F90/C/C++ F77/F90/C/C++ pgdbg pgprof X X
Microsoft Visual Studio 2003 C++ Visual Studio X X
Microsoft Visual Studio 2005 C++ C++ Visual Studio X X
Etnus TotalView 8.0 X X X X
XeonOpteron
Solaris
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Programming EnvironmentMPI Libraries and Tools
Company Version MPI2 support Debugger Runtime Analysis Plattform Network
Sun HPC ClusterTools 5 yes TotalView, Prism analyzer, mpprof Solaris 9 tcp, shm, FireLinkSun HPC ClusterTools 6 yes TotalView analyzer, mpprof Solaris 10 tcp, shm
Sun HPC ClusterTools 7based on OpenMPI yes TotalView analyzer Solaris 10 tcp, shm, infiniband
Intel based on mpich2.x yes TotalViewIntel
TraceCollector& Analyzer
Linux tcp, shm, Infiniband
ANL mpich 1.2.6 no TotalView jumpshot Sol, Lin, Win tcp, shmANL mpich2 1.0.x yes TotalView Sol, Lin, Win tcp, shm
Voltaire based on mpich 1.2.5 no ? Linux tcp, shm, Infiniband
Microsoft based on mpich2 yesVisual Studio w/
MS Compute Cluster Pack
Windows tcp, shm, (Infiniband)
Univ Dresden installation planned ? Vampir-NG Sol, Lin any
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Application SoftwareFEM Abaqus Ansys Hyperworks Ls-Dyna Marc/Mentat Nastran/Patran
Chemie Gaussian Turbomole
CFD CFX/TASCFlow Fluent ICEM-CFD StarCD
Mathematik Maple Mathematica
Misc Matlab/Simulink Tecplot
Site licenseParallel version availableNo site license
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License Conditions and FeesCommercial Application Software the responsilitiy of each user no commercial usage fees covered by the institutions
Commercial development tools are provided by theCCC
Compilers MPI Debuggers Runtime Analysis tools
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System Management Frontend nodes for interactive work,
program development and testing, GUIscluster.rz.RWTH-Aachen.DE (USIV-Solaris 9)cluster-sol10.rz.RWTH-Aachen.DE (USIV-Solaris 10)cluster-sun-x86.rz.RWTH-Aachen.DE (OPT-Solaris 10)cluster-linux.rz.RWTH-Aachen.DE (Opteron-Linux 64b)cluster-win.rz.RWTH-Aachen.DE (Intel-Windows 64b)
Batch system Sun Grid Engine: jobs (> 20 min)
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Sun Grid Engine Job submission
qsub [options] scriptfile [- scriptarguments]
Job deletionqdel job_id
Job status inquiryqstat [options]
-help-f #all queues and jobs-j job_id-u user
Graphical Interfaceqmon
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www.rz.rwth-aachen.de/computing/hpc/statistics/load/
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Some Web-links Web page of the SunHPC workshop with more links and information
http://www.rz.rwth-aachen.de/sunhpc Information related to HPC at the RWTH
http://www.rz.rwth-aachen.de/hpc/ Information related to the RWTH Sun Fire SMP Cluster
http://www.rz.rwth-aachen.de/hpc/sun/ Sun Fire SMP Cluster Primer
http://www.rz.rwth-aachen.de/hpc/primer Further reading: Batch system
http://www.rz.rwth-aachen.de/hpc/batch Further reading: Software
http://www.rz.rwth-aachen.de/computing/sw
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Questions? Problems?
Just send an e-mail to our trouble ticket system:
Software and Licensing:[email protected]
Batch system:[email protected]
Support inquiries:[email protected]
Programming, Debugging, Tuning, Parallelization:[email protected]
HPC @ RZ.RWTH-AACHEN.DEAgenda - OverviewCompute Cluster RWTH AachenOverview over HPC Tools Programming Environment Compilers + Debugging ToolsProgramming Environment MPI Libraries and ToolsApplication SoftwareLicense Conditions and FeesSystem ManagementSun Grid Enginewww.rz.rwth-aachen.de/computing/hpc/statistics/load/Some Web-linksQuestions? Problems?