1 diazonamide a: the long story of a misunderstood molecule seminar presented by elisia villemure...

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1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

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3 Why Is this Molecule So Interesting? Diazonamide A has a IC 50 of 2-5 nM against 4 human cancer cell lines (Diazonamide A is more potent than Diazonamide B) Molecule is trapped as a single atropisomer because of its rigidity Macrolactam unit Macrocyclic Heterocyclic core Quaternary center at the center of the molecule Over the years, many groups focused their efforts towards the synthesis of Diazonamide A. Only K. C. Nicolaou’s and P. G. Harran’s groups had been able to complete the total synthesis of the molecule. Fenical, W.; Clardy, J. J. Am. Chem. Soc. 1991, 113, 2303 Initially proposed structure

TRANSCRIPT

Page 1: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

1

Diazonamide A: The Long Story of a Misunderstood Molecule

Seminar presented by Elisia VillemureFebruary 14, 2008

Page 2: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

2

The Origin of Diazonamide

Isolated from the colonial ascidianDiazona angulata

Collected from the ceilings of cavesalong the northwest coast of SiquijorIsland in the Philippines

Fenical, W.; Clardy, J. J. Am. Chem. Soc. 1991, 113, 2303

Page 3: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

3

Why Is this Molecule So Interesting?

HN

OH2N

Me Me

O

HN

Me MeH

O

N

ONH

ClO

N Cl

OHOH

A B

C

D

EFG

12

10

11

25

27HN

OH2N

Me Me

O

HN

Me MeH

O

N

ONH

ClO

N Cl

OHOH

A B

C

D

EFG

12

10

11

25

27

HN

OH2N

Me Me

O

HN

Me MeH

O

N

ONH

ClO

N Cl

OHOH

A B

C

D

EFG

12

10

11

25

27HN

OH2N

Me Me

O

HN

Me MeH

O

N

ONH

ClO

N Cl

OHOH

A B

C

D

EFG

12

10

11

25

27

Diazonamide A has a IC50 of 2-5 nM against 4 human cancer cell lines (Diazonamide A is more potent than Diazonamide B)

Molecule is trapped as a single atropisomer because of its rigidity

Macrolactam unit

Macrocyclic Heterocyclic core

Quaternary center at the center of the molecule

Over the years, many groups focused their efforts towards the synthesis of Diazonamide A. Only K. C. Nicolaou’s and P. G. Harran’s groups had been able to

complete the total synthesis of the molecule.

Fenical, W.; Clardy, J. J. Am. Chem. Soc. 1991, 113, 2303

Initially proposed structure

HN

OH2N

Me Me

O

HN

Me MeH

O

N

ONH

ClO

N Cl

OHOH

A B

C

D

EFG

12

10

11

25

27

Page 4: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

4

Structure Determination of Diazonamide A and B

Structures determined by William Fenical (Scripps Institution of Oceanography)And Jon Clardy (Cornell University) in 1991

Diazonamide A Diazonamide B

HN

OH2N

Me Me

O

HN

Me MeH

O

N

ONH

ClO

N Cl

OHOH

H2NO

HN

Me MeH

O

N

ONH

ClO

N Cl

OHOHBr

Fenical, W.; Clardy, J. J. Am. Chem. Soc. 1991, 113, 2303

Page 5: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

5

Strategy for Structure Elucidation

Purecompound

Molecularformula

Functionalgroups

Substructures

Very secure3D molecular

structure

MS, NMR

NMR, IR

UV

NMR

X-Ray

Insaturationnumber

Reasonable3D molecular

structure

New 2Dmolecularstructure

List ofworking 2Dstructure

Working 2Dstructures

Draw all isomers

NMR, MS, IR, UV

NMR

Molecularmodeling

Total synthesis

Jaspars, M Nat. Prod. Rep. 1999, 16, 241 Pretsch, E.; Toth, G.; Munk, M. E. ; Baddertscher, M. Computer-Aided Structure Elucidation, Wiley-VCH 2002, 279 p.

Page 6: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

6

Evidence of the Presence of an Hemiacetal in Diazonamide A and B

HETCOR: Correlation between H at 6.46 ppm and C11 (106.6 ppm)

J= 3.5 HzD2O exchangeable proton

H 6.46 ppm

RNO

HN

Me MeH

O

N

ONH

ClO

N Cl

OOH H

H10

11

Fenical, W.; Clardy, J. J. Am. Chem. Soc. 1991, 113, 2303

Page 7: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

7

Evidence on the Structure of Diazonamide A and B

Diazonamide A Diazonamide B

HN

OH2N

Me Me

O

HN

Me MeH

O

N

ONH

ClO

N Cl

OHOH

H2NO

HN

Me MeH

O

N

ONH

ClO

N Cl

OHOHBr

Fenical, W.; Clardy, J. J. Am. Chem. Soc. 1991, 113, 2303

Similarity in the 2 structures

1H, 13C NMR, UV and IR indicate an identical polycyclic nucleus

UV shows evidence of their high degree of unsaturation

Page 8: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

8

Evidences on the Structure of Diazonamide A and B

Diazonamide A Diazonamide B

HN

OH2N

Me Me

O

HN

Me MeH

O

N

ONH

ClO

N Cl

OHOH

H2NO

HN

Me MeH

O

N

ONH

ClO

N Cl

OHOHBr

Fenical, W.; Clardy, J. J. Am. Chem. Soc. 1991, 113, 2303

MS (M + H – H2O): C40H35N6O6Cl2 C35H24N5O5Cl2Br

+ 5 Carbons+ 11 Hydrogens+ 1 Nitrogen+ 1 Oxygen

+ 1 Bromine

An valine extra residue fits the differences in the molecular formula and coincides with NMR assignment

Page 9: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

9

Crystal Structure of Diazonamide B

Fenical, W.; Clardy, J. J. Am. Chem. Soc. 1991, 113, 2303

H2NO

HN

Me MeH

O

N

ONH

ClO

N Cl

OHOHBr Br

O

Cl

HN

O

HN

Me MeH

O

N

ONH

ClO

N Cl

OBr

O

Br

Amorphous solid Crystalline solidHemiacetal becomes

an acetal

Pyridine

Mass spectroscopy of Diazonamide A and B

gives M+ -H2O

Page 10: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

10

First Synthesis by Harran’s GroupIn 2001, P. G. Harran published the first synthesis of ‘’Diazonamide A’’.

HN

OH2N

Me Me

O

HN

Me MeH

O

N

ONH

ClO

N Cl

OHOH

24 step synthesis

Spectroscopic data didn’t match the natural product

assignment!!!

Revision of the structure is proposed!

Harran, P. G. Angew. Chem., Int. Ed. 2001, 40, 4765

Page 11: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

11

Structural Misassignment in Literature

NCN

O

O

AcO

OAc

OH

OAc

Me

HONN

O

O

AcO

OAc

OH

OAc

Me

HO

NH HN

O Me

NNH

O

Me

OMe

HO

OAc

Me

O

AcO

OH

MeMe

NH HN

O Me

NNH

O

Me

OMe

HO

OAc

Me

O

AcO

OH

MeMe

A search in the literature between January 1990 to April 2004 revealed 300 structural revisions of natural products

Kinamycin C:

(+)-tolyporphin A:

Nicolaou, K. C. Angew. Chem., Int. Ed. 2005, 44, 1012

Me H

HOO

O

Me

OH

Me

Wiedemannic Acid

Sauer, E., Barriault, L. Org. Lett. 2004, 19, 3329

Page 12: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

12

Diazonamide Structure Revision In 2001, P. G. Haran’s group published the structure revision of Diazonamide

Harran, P. G. Angew. Chem., Int. Ed. 2001, 40, 4770

HN

OH2N

Me Me

O

HN

Me MeH

O

N

ONH

ClO

N Cl

OHOH

HN

OH2N

Me Me

O

HN

Me MeH

O

N

ONH

ClO

N Cl

O

Dehydrated form

Mass spectroscopy and X-Ray appeared to coincide with the dehydrated form

Originally proposed structure

Page 13: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

13

X-Ray Crystallography

X-Ray generator Crystal Diffraction pattern

Incident X-Ray

Scattered X-Ray

NucleusElectron cloud

Atom

Every atom scatters X-Ray differently depending on its sizeHydrogen atoms are almost invisible in X-Ray

Massa, W. Crystal Structure Determination, Spinger 2004, 210 p.Clegg, W.; Blake, A.J.; Gould, R.O.; Main, P. Crystal Structure Analysis Principles and Practice, Oxford Science Publication 2001, 265p.

Page 14: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

14

X-Ray Crystallography

X-Ray Phasing Fitting

Crystal Diffractionpatterns

Electrondensity map

Atomicmodel

1- The crystal is mounted in the X-Ray beam and rotated

2- The crystal is irradiated by X-Ray (typical wavelength: 1 Å (0.1 nm))

3- Multiple diffraction patterns are obtained

Massa, W. Crystal Structure Determination, Spinger 2004, 210 p.Clegg, W.; Blake, A.J.; Gould, R.O.; Main, P. Crystal Structure Analysis Principles and Practice, Oxford Science Publication 2001, 265p.

4- Phasing :2D images are converted into a 3D model of the density of electrons by mathematic calculations

5- Fitting: Electron density map is converted into a atomic model

Page 15: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

15

X-Ray Crystallography

X-Ray Phasing Fitting

Crystal Diffractionpatterns

Electrondensity map

Atomicmodel

Thermal ellipsoids atomic model: Represents the probability of finding the electrons around the atom as it vibrates.High probability = More precise atomic model = Smaller ellipsoids

OH>

O NH2 >OH

Thermal ellipsoids size:

Debye-Waller factor (B-factor): -Accountingfor the thermal motion of the atom- Numeric representation of the size of the ellipsoid

Massa, W. Crystal Structure Determination, Spinger 2004, 210 p.Clegg, W.; Blake, A.J.; Gould, R.O.; Main, P. Crystal Structure Analysis Principles and Practice, Oxford Science Publication 2001, 265p.

Page 16: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

16

X-Ray Crystallography

Collected information Structure in the space

Stereochemistry Bond lengths Bond angles

Debye-Waller factor (B-factor)

Massa, W. Crystal Structure Determination, Spinger 2004, 210 p.Clegg, W.; Blake, A.J.; Gould, R.O.; Main, P. Crystal Structure Analysis Principles and Practice, Oxford Science Publication 2001, 265p.

Page 17: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

17

Diazonamide Structure Revision

Typical C–O bond distances: 1.353-1.409 Å Typical C–N bond distances: 1.365-1.411 Å

C7–O2 bond length: 1.371 Å

C17–O3 bond length: 1.433 Å

Natural Diazonamide bicyclic core

C10(4.83) C12

(4.83)

C17(4.53)

O3(7.42)

C11(5.13)

O2(5.46)

C7(4.49)

C8(4.33)

Harran, P. G. Angew. Chem., Int. Ed. 2001, 40, 4770

HN

OH2N

Me Me

O

HN

Me MeH

O

N

ONH

ClO

N Cl

O

C10

C11

O2O3C7

C17

Page 18: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

18

Diazonamide Structure Revision

O3 has a large thermal motion compared with O2

X-Ray analysis of the synthetic Diazonamide BB(eq) : O2 = 6.00 Å2 O3 = 5.35 Å2

C10(4.83) C12

(4.83)

C17(4.53)

O3(7.42)

C11(5.13)

O2(5.46)

C7(4.49)

C8(4.33)

Natural Diazonamide bicyclic core

Harran, P. G. Angew. Chem., Int. Ed. 2001, 40, 4770

The bond length and the B-factor are consistent the hypothesis of O3 being a Nitrogen

HN

OH2N

Me Me

O

HN

Me MeH

O

N

ONH

ClO

N Cl

O

C10

C11

O2O3C7

C17

Page 19: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

19

Diazonamide Structure Revision

In X-Ray, the scattering power of an atom is proportionalto its atomic number. Neighboring atoms in the periodic

table differ slightly from one another, like O and N

C10(4.83) C12

(4.83)

C17(4.53)

O3(7.42)

C11(5.13)

O2(5.46)

C7(4.49)

C8(4.33)

Natural Diazonamide bicyclic core

Harran, P. G. Angew. Chem., Int. Ed. 2001, 40, 4770

HN

OH2N

Me Me

O

HN

Me MeH

O

N

ONH

ClO

N Cl

O

C10

C11

O2O3C7

C17

Page 20: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

20

Comparison of the Assignments

RNO

HN

Me MeH

O

N

ONH

ClO

N Cl

OOH H

H10

11

J= 3.5 HzD2O exchangeable proton

H 6.46 ppm

RNO

HN

Me MeH

O

N

NNH

ClO

N Cl

10

11

O H

H

J= 3.5 HzD2O exchangeable proton

H 6.46 ppm

HETCOR: Correlation between H at 6.46 ppm and C11 (106.6 ppm)

Harran, P. G. Angew. Chem., Int. Ed. 2001, 40, 4770Fenical, W.; Clardy, J. J. Am. Chem. Soc. 1991, 113, 2303

Page 21: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

21

Diazonamide Structure Revision

To be consistent with the molecular formula, C40H35N6O6Cl2, one oxygen atom is missingand there is one extra nitrogen

HN

O

HN

Me MeH

O

N

NHNH

ClO

N Cl

O

OH2N

MeMe

5 oxygens

7 nitrogens

Harran, P. G. Angew. Chem., Int. Ed. 2001, 40, 4770

Page 22: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

22

Diazonamide Structure Revision

Acid digests of diazonamide A do not produce valine, but indicatesthe presence of two isopropyl groups

HN

O

HN

Me MeH

O

N

NHNH

ClO

N Cl

O

OH2N

MeMe

7

37H

N7 protons are reported as a sharpone-proton doublet

C37 resonates at 76,9 ppm. Considerably downfield for a typical valine (~62 ppm)

These observations are consistent with C37 substituent being an alcohol rather than an amine

Harran, P. G. Angew. Chem., Int. Ed. 2001, 40, 4770

Page 23: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

23

Diazonamide Structure Revision

HN

O

HN

Me MeH

O

N

ONH

ClO

N Cl

O

OHO

MeMe

37

C37-S: HN

OHO

MeMe

37

C37-R: HN

OHO

MeMe

37

Compound GI50 (nM)

Natural diazonamide A 8

C37-S 16

C37-R 191

Growth inhibition determined for human adenocacinoma OVCAR-3

Harran, P. G. Angew. Chem., Int. Ed. 2001, 40, 470

Dehydrated form of the originally proposed structure

Page 24: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

24

Find the differences!

Harran, P. G. Angew. Chem., Int. Ed. 2001, 40, 4770

Later validated by total synthesis

Nicolaou, K. C. Angew. Chem., Int. Ed. 2002, 41, 3495Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12888

HN

OH2N

Me Me

O

HN

Me MeH

O

N

ONH

ClO

N ClHN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

OHOH

Original structure Revised structure

Page 25: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

25

Diazonamide A Timeline Discovery

Fenical, W.; Clardy, J. J. Am. Chem. Soc. 1991, 113, 2303

Harran, P. G. Angew. Chem., Int. Ed. 2001, 40, 4770Harran, P. G. Angew. Chem., Int. Ed. 2001, 40, 4765

Nicolaou, K. C. Angew. Chem., Int. Ed. 2002, 41, 3495

Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12888 Nicolaou, K. C. Angew. Chem., Int. Ed. 2003, 42, 1753Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897Harran, P. G. Angew. Chem., Int. Ed. 2003, 42, 4961

1991 Structure determinationby Fenical and Clardy

2001First synthesis of the originally proposed structure by Harran

2002 First total synthesis

of the revised structure by Nicolaou

2001Structure revision

by Harran

Confirmation of the revised strucutre

2003 Total synthesis

of the revised structure by Nicolaou

2003 Total synthesis of the

revised structure by Harran

Page 26: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

26

Nicolaou’s Synthetic Strategy

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N ClHN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N ClHN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl Formation of theHeterocyclic core

Macrolactamization

Nicolaou, K. C. Angew. Chem., Int. Ed. 2003, 42, 1753Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897

Page 27: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

27

Retrosynthetic Analysis of Diazonamide A

HO

NH

NBnNMOM

O

N

OBn

O

NCbzMeMe

O

FmocHN

Me

Me

FmocHN

OBn

NCbz

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Chlorination

Peptide coupling

Aminal formation

Macro-lactamization Me Me

O

N

NBnNMOM

O

N

OMe

Me

Robinson-GabrielCyclodehydration and [O]

NBnNMOM

O

N

OBn

O

NCbzMeMe

NOMe

O

Heteropinacol

coupling/

Oximecleavagecascade

Nicolaou, K. C. Angew. Chem., Int. Ed. 2003, 42, 1753Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897

O

FmocHN

OBn

NCbz

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Chlorination

Peptide coupling

Aminal formation

Macro-lactamization Me Me

O

N

NBnNMOM

O

N

OMe

Me

Robinson-GabrielCyclodehydration and [O]

HO

NH

NBnNMOM

O

N

OBn

O

NCbzMeMe

FmocHN

Me

Me

NBnNMOM

O

N

OBn

O

NCbzMeMe

NOMe

O

Heteropinacol

coupling/

Oximecleavagecascade

OBn

NCbz

FmocHNHN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Chlorination

Peptide coupling

Aminal formation

Macro-lactamization Me Me

O

N

NBnNMOM

O

N

OMe

Me

Robinson-GabrielCyclodehydration and [O]

HO

NH

NBnNMOM

O

N

OBn

O

NCbzMeMe

O

FmocHN

Me

Me

NBnNMOM

O

N

OBn

O

NCbzMeMe

NOMe

O

Heteropinacol

coupling/

Oximecleavagecascade

Page 28: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

28

Retrosynthetic Analysis of Diazonamide A

Nicolaou, K. C. Angew. Chem., Int. Ed. 2003, 42, 1753Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897

NBnNMOM

O

N

OBn

O

NCbzMeMe

NOMe

O

Suzuki coupling

NMOM

B OONO

OTBDPS

NBn Br

OTBS

BnO

NCbz

O Me

Me

+

Page 29: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

29

Retrosynthetic Analysis of Diazonamide A

Nicolaou, K. C. Angew. Chem., Int. Ed. 2003, 42, 1753Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897

NMOM

B OONO

OTBDPS

NH

Br

8 steps

NBn Br

OTBS

BnO

NCbz

O Me

Me

OH

CO2Me

NH2

+NH

O

OBr

12 steps

Page 30: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

30

NH

BrN

NO2 (1.1 equiv.)

TFA NH

Br NO2

LiAlH4 (6 equiv.)

THF, 25 65oC87% over 2 steps N

H

Br NH2

HO OTBDPSO

(1 equiv.)EDC (1 equiv.)HOBt (1 equiv.)DCM79%

NH

Br HNO

TBDPSO

1)DDQ (3 equiv.) THF/H2O (9:1), 0oC

2) IBX (3 equiv.) THF/DMSO (1:1)

90%NH

Br HNO

TBDPSO

O

IO

O

OHO

IBX:

CN N

N

EDC:

NN

N

OH

HOBt:

O

O

Cl

Cl

NC

NC

DDQ:

Synthesis of Indole-OxazoleBuilding Block

Nicolaou, K. C. Angew. Chem., Int. Ed. 2003, 42, 1753Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 10162

Page 31: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

31

Synthesis of Indole-OxazoleBuilding Block

NH

Br HNO

TBDPSO

O

NH

Br NO

TBDPSO

Cl3CCCl3 (2 equiv.), PPh3 (2 equiv.)

NEt3 (4 equiv.), 25oC, 15 min

Wipf's modification of the Robinson-Gabrielcyclodehydration

:PPh3

Cl

ClCl

Cl

Cl

ClPPh3Cl

Cl

R

HN

O

OOTBDPS

R= 4-bromoindole ON

R

OPh3P HH

:NEt3PPh3O

TBDPSO

ON

TBDPSO

R

Cl2C=CCl2 T.P.

Nicolaou, K. C. Angew. Chem., Int. Ed. 2003, 42, 1753Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Li, J. J. Name Reactions in Heterocyclic Chemistry, Wiley-Interscience 2005, 557p.

Page 32: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

32

Synthesis of Indole-OxazoleBuilding Block

NH

Br NO

TBDPSO

i) NaH (1.3 equiv.) THF, 0oC, 5 min

ii) MOMCl (1.2 equiv.) 0oC, 5 min

95%

N

Br NO

TBDPSO

OMe

N

B NO

OMe

OTBDPS

OOB B

O

O O

O

(2.5 equiv.)

Pd(dppf)Cl2 DCM (10 mol%)KOAc (3 equiv.)

1,4-dioxane, 95oC85%

Nicolaou, K. C. Angew. Chem., Int. Ed. 2003, 42, 1753Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Miyaura, N. J. Org. Chem. 1995, 60, 7508

Page 33: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

33

Synthesis of the Aryl Bromide Coupling Partner

OH

CO2Me

NH2

NH

O

OBr

Ph O

O

Cl(CbzCl)

Na2CO3 (aq) (excess)DCM94%

(1 equiv.)

OH

CO2Me

NHCbz

TiCl4, DCM58% N

HO

OH

HO

NHCbz

CO2Me

Br

1) SOCl2 90%2) NaCNBH3 (3 equiv.) MeCN 84%N

HO

Cl

NH

OHO

NHCbz

CO2Me

Br

1) LiBH4 (4 equiv.), THF97%

2) OMeMeO (10 equiv.)

p-TsOH (0.1 equiv.)acetone

98%NH

OHO

Br

NCbz

OMeMe

Nicolaou, K. C. Angew. Chem., Int. Ed. 2003, 42, 1753Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Page 34: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

34

Synthesis of the Aryl Bromide Coupling Partner

Nicolaou, K. C. Angew. Chem., Int. Ed. 2003, 42, 1753Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897

Padwa, A. J. Am Chem. Soc. 1975, 97, 1837

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

NH

OHO

Br

NCbz

O MeMe

1) TMSCl (4 equiv.), Et3N (6 equiv.) DCM, 0oC

2) HCHO (37% in H2O, 10 equiv.) Yb(OTf)3 (0.25 equiv.)

NH

OHO

Br

NCbz

O MeMe

OH

NH

TMSOBr

H H

OYb(OTf)3

70%

Unseparable 1:1 mixtureof diastereomers. They were

carried forward together

Page 35: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

35

NH

OHO

Br

NCbz

O MeMe

OHSi(tBu)Me2Cl (4 equiv.)

imidazole (8 equiv.)DCM84%

(TBSCl)

NH

OTBSO

Br

NCbz

O MeMe

OTBS1) LiOH (3 equiv.) DMF

2) BnBr (4 equiv.) KF alumina (5 equiv.) DME

85%NBn

OBnO

Br

NCbz

O MeMe

OTBS

9-BBN (5 equiv.)THF, 65oC

72%BH

9-BBN:

NBn

BnO

Br

NCbz

O MeMe

OTBS

Synthesis of the Aryl Bromide Coupling Partner

Nicolaou, K. C. Angew. Chem., Int. Ed. 2003, 42, 1753Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Page 36: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

36

Synthesis of Diazonamide ANicolaou’s Group

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Nicolaou, K. C. Angew. Chem., Int. Ed. 2003, 42, 1753Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897

NMOM

B OONO

OTBDPS

NBn Br

OTBS

BnO

NCbz

O Me

Me

+

(1.05 equiv.)(1.0 equiv.)

Pd(dppf)Cl2 DCM (20 mol%)K2CO3 (5 equiv.)DME, 85oC, 12h78%

NBnNMOM

O

N

OBn

O

NCbzMeMe

TBDPSO

TBSO

Page 37: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

37

Parikh-Doering oxidation

Synthesis of Diazonamide ANicolaou’s Group

NBnNMOM

O

N

OBn

O

NCbz

Me

Me

TBDPSO

TBSO

NBnNMOM

O

N

OBn

O

NCbz

Me

Me

HO

HO

TBAF (6 equiv.)

THF, 45oC94%

TBAF: (nBu)4N+F-

SO3 py (8.3 equiv.)DMSO/DCM (1:1), 0oC91%

NBnNMOM

O

N

OBn

O

NCbz

Me

Me

O

O

NBnNMOM

O

N

OBn

O

NCbz

Me

Me

N

O

OMe

MeONH2HCl (5 equiv.)

DMSO91%

Most accessible aldehyde

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Nicolaou, K. C. Angew. Chem., Int. Ed. 2003, 42, 1753Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897

Page 38: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

38

Synthesis of Diazonamide ANicolaou’s Group

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Nicolaou, K. C. Angew. Chem., Int. Ed. 2003, 42, 1753Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897

Mixture of 8 diastereomers

1) i) SmI2 (9 equiv.), DMA (36 equiv.), THF, 1h ii) NH4Cl(aq), 1h 2) FmocValOH (3 equiv.), EDC (3 equiv.) HOBt (3 equiv.), DMF, 10h

45-50%

HO

NH

NBnNMOM

O

N

OBn

O

NCbzMeMe

O

FmocHN

Me

Me

NBnNMOM

O

N

OBn

O

NCbzMeMe

NOMe

O

FmocValOH:FmocHN

OH

MeMe

O

Fmoc:O

O

Page 39: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

39

Hetero Pinacol Sequence Proposed Mechanism

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897

O N OMe

radical generation

SmI2, DMA O N OMeSmIII SmIII

Pinacolcyclization

O N OMeSmIII SmIII

SmI2, DMA

N-O Cleavage

O NSmIII SmIII

SmIII1) NH4Cl(aq)

HO NH

O

FmocHN

Me

Me

2) FmocValOHEDC, HOBt

Page 40: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

40

Synthesis of Diazonamide ANicolaou’s Group

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

HO

NH

NBnNMOM

O

N

OBn

O

NCbzMeMe

O

FmocHN

Me

Me

TPAP (1 equiv.)NMO (5 equiv.) 4 Å molecular sievesDCM65%

O

NH

NBnNMOM

O

N

OBn

O

NCbzMeMe

O

FmocHN

Me

Me

Ley oxidation

TPAP:Ru

O

O O

O

N(nPr)4

NMO:N

O

O

OxidantCo-oxidant

Nicolaou, K. C. Angew. Chem., Int. Ed. 2003, 42, 1753Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897

Mixture of 4 diastereomers

Page 41: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

41

Synthesis of Diazonamide ANicolaou’s Group

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Nicolaou, K. C. Angew. Chem., Int. Ed. 2003, 42, 1753Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897

O

NH

NBnNMOM

O

N

OBn

O

NCbzMeMe

O

FmocHN

Me

Me

POCl3/pyridine (1:2)70oC35%

FmocHN

Me Me

O

N

NBnNMOM

O

N

OBn

O

NCbzMeMe

Robinson-Gabrielcyclodehydration

Mixture of 2 diastereomers

Page 42: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

42

Synthesis of Diazonamide ANicolaou’s Group

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Nicolaou, K. C. Angew. Chem., Int. Ed. 2003, 42, 1753Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897

FmocHN

Me Me

O

N

NBnNMOM

O

N

OBn

O

NCbzMeMe

1) HF(aq) (3 equiv.), MeCN, 0oC 95%2) IBX (5 equiv.) DMSO3) NaClO2 (5 equiv.) NaH2PO4 (5 equiv.) resorcinol (5 equiv.) DMSO/H2O (10:1)

89% over 2 steps

H2N

Me Me

O

N

NBnNMOM

O

N

OBn

O

CbzHN

4) Et2NH/THF (1:5) 97%

OH

Acetonide deprotection

Alcohol oxidation

Fmoc deprotection

Mixture of 2 diastereomers

Page 43: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

43

Synthesis of Diazonamide ANicolaou’s Group

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Nicolaou, K. C. Angew. Chem., Int. Ed. 2003, 42, 1753Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897

NNN

N

ON

N

PF6

HATU:

Only one diastereomer cyclizes: the desired one

H2N

Me Me

O

N

NBnNMOM

O

N

OBn

O

CbzHN

OH

CbzHNO

HN

Me Me

O

N

OBnNBn

NMOM

O

N

HATU (2 equiv.)2,4,6-collidine (6 equiv.)DMF/DCM (1:2, 0.1 mM)25oC, 7 days10-15%

Macrolactamization

Page 44: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

44

Synthesis of Diazonamide ANicolaou’s Group

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

!!!

CbzHNO

HN

Me Me

O

N

OBn

NBnNMOM

O

N

H2 (1 atm)Pd(OH)2/C (excess)EtOH

CbzHNO

HN

Me Me

O

N

OH

NHNMOM

O

N

O

Substrate specific:Doesn’t work with other model substrates

Nicolaou, K. C. Angew. Chem., Int. Ed. 2003, 42, 1753Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897

Page 45: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

45

Proposed Mechanism for the Oxidation with Pearlman’s Catalyst

Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897

NHOH

Pd(OH)2 2H2O

NO

[Pd]

HH

-hydrideelimination

NO

[Pd]

Migratory insertion

H

NO

[Pd]

-hydrideelimination

NO [Pd] H

H

-[Pd0]-H2

Attack by -OHor H2O

NHO

OH

Ringopening

NOH HO

NHOH O

Tauto-merization

H

H

Page 46: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

46

Synthesis of Diazonamide ANicolaou’s Group

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Nicolaou, K. C. Angew. Chem., Int. Ed. 2003, 42, 1753Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897

CbzHNO

HN

Me Me

O

N

OH

NHNMOM

O

N

O

CbzHNO

HN

Me Me

O

N

OCbz

NHNMOM

O

N

O

Cl

Cl

1) CbzCl (5 equiv.) NaHCO3(aq)/ 1,4-dioxane (1:2) 35% over 2 steps

2) NCS (4 equiv.) CCl4/THF (1:1), 60oC NCS:

N

O

O

Cl

Page 47: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

47

CbzHNO

HN

Me Me

O

N

OCbz

NHNMOM

O

N

O

Cl

Cl CbzHNO

HN

Me Me

O

N

OH

NHNH

O

N

O

Cl

Cli) BCl3 (5 equiv.) DCM, -78oC

ii) NaOH 10%, THF 25oC

75% over 2 steps

N

Cl

O

BCl2

Cl

N

Cl

O

BCl2

Me MeCl

N

Cl

O BCl2-MeCl

NaOH

HOBCl2

N

Cl

ONa

-CH2O

+H3O+NH

Cl

Synthesis of Diazonamide ANicolaou’s Group

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Nicolaou, K. C. Angew. Chem., Int. Ed. 2003, 42, 1753Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897

Page 48: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

48

Synthesis of Diazonamide ANicolaou’s Group

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Nicolaou, K. C. Angew. Chem., Int. Ed. 2003, 42, 1753Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897

Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12888

CbzHNO

HN

Me Me

O

N

OH

NHNH

O

N

O

Cl

ClDIBAL-H

(100 equiv. added portionwise5 x 20 equiv.)

O

NTHF, -78 25oC56%

CbzHNO

HN

Me Me

O

N

ONH

NH

ClO

N Cl

DIBAL-H: AlH

Page 49: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

49

Synthesis of Diazonamide ANicolaou’s Group

CbzHNO

HN

Me Me

O

N

ONH

NH

ClO

N Cl

1) H2 (2 atm), Pd(OH)2/C (cat.) EtOH2) EDC (5 equiv.), HOBt (5 equiv.) NaHCO3 (15 equiv.), DMF

OHHOO

MeMe

(5 equiv.)

82% over 2 steps

HN

O

HN

Me Me

O

N

ONH

NH

ClO

N Cl

OHO

Me Me

Diazonamide A!

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Nicolaou, K. C. Angew. Chem., Int. Ed. 2003, 42, 1753Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897

CN N

N

EDC:

NN

N

OH

HOBt:

Page 50: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

50

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

39 steps synthesis 31 steps in the longest linear sequence (overall yield: 0.01% !!)

First example of an heteropinacol cyclization cascade in the formation of a macrocycle

Surprising concomitant Reduction/Oxidation reaction using Pearlman’s catalyst

Overview of Nicolaou’s Group Synthesis

Nicolaou, K. C. Angew. Chem., Int. Ed. 2003, 42, 1753Nicolaou, K. C. J. Am. Chem. Soc. 2004, 126, 12897

Page 51: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

51

Harran’s Synthetic Strategy

OH

HN CO2H

NH

HNO2HC

NH

HO2C

NH

Me Me

CO2HHO

Me Me

CO2HHN

[O]

[O] Cl+

Cl+

Harran’s synthesis is inspired by his hypothesis on the biosynthesis of the natural Diazonamide A

Harran, P. G. Angew. Chem., Int. Ed. 2001, 40, 4770Harran, P. G. Angew. Chem., Int. Ed. 2003, 42, 4961

Page 52: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

52

Retrosynthetic Analysis of the Diazonamide ARobinson-Gabriel Cyclodehydration /

Oxidation

RHN

O

O

NHN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Chlorination

Photoinducedelectron transfer

cyclization

O

HN

Me MeH

O

N

ONH

NH

Br

Electronsource

RHNO

HN

Me MeH

O

N

ONH Br

CO2Me

Oxidative''cycloaddition''

RHNO

HN

Me MeH

O

NCO2Me

NH Br

OH

Peptide coupling

RHNO

HN

Me MeH

O

N

ONH Br

NH

NH

OAc

Electronsink

Robinson-Gabriel Cyclodehydration /

Oxidation

RHN

O

O

NHN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Chlorination

Photoinducedelectron transfer

cyclization

O

HN

Me MeH

O

N

ONH

NH

Br

Electronsource

RHNO

HN

Me MeH

O

N

ONH Br

CO2Me

Oxidative''cycloaddition''

RHNO

HN

Me MeH

O

NCO2Me

NH Br

OH

Peptide coupling

RHNO

HN

Me MeH

O

N

ONH Br

NH

NH

OAc

Electronsink

Harran, P. G. Angew. Chem., Int. Ed. 2003, 42, 4961

Robinson-Gabriel Cyclodehydration /

Oxidation

RHN

O

O

NHN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Chlorination

Photoinducedelectron transfer

cyclization

O

HN

Me MeH

O

N

ONH

NH

Br

Electronsource

RHNO

HN

Me MeH

O

N

ONH Br

CO2Me

Oxidative''cycloaddition''

RHNO

HN

Me MeH

O

NCO2Me

NH Br

OH

Peptide coupling

RHNO

HN

Me MeH

O

N

ONH Br

NH

NH

OAc

Electronsink

Robinson-Gabriel Cyclodehydration /

Oxidation

RHN

O

O

NHN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Chlorination

Photoinducedelectron transfer

cyclization

O

HN

Me MeH

O

N

ONH

NH

Br

Electronsource

RHNO

HN

Me MeH

O

N

ONH Br

CO2Me

Oxidative''cycloaddition''

RHNO

HN

Me MeH

O

NCO2Me

NH Br

OH

Peptide coupling

RHNO

HN

Me MeH

O

N

ONH Br

NH

NH

OAc

Electronsink

Page 53: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

53

Retrosynthetic Analysis of Diazonamide A

Harran, P. G. Angew. Chem., Int. Ed. 2003, 42, 4961

H2N

Me MeH

O

NCO2Me

NH Br

HBr

OH

RHNO

OH

+

OH

RHNO

HN

Me MeH

O

NCO2Me

NH Br

Peptidecoupling

Page 54: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

54

Yonemitsu oxidation

DDQ:O

O

Cl

Cl

CN

CN

Synthesis of the 3-Oxazoylindole H2N

Me MeH

O

NCO2Me

NH Br

HBr

CO2Me

NH2

NHBr

HCl

NClMe Me

CbzHNOH

O

, DCM

N

Me Me

CbzHN

HN

O

CO2Me

NH

Br

Me Me

CbzHNCl

O

76%

1) DDQ (2.3 equiv), THF 70oC, 2h

90%

2) 33% HBr in AcOH94%

H2N

Me MeH

O

NCO2Me

NH Br

HBr

Harran, P. G. Angew. Chem., Int. Ed. 2003, 42, 4961Yonemistsu, O. Heterocycles 1979, 12, 1457

Page 55: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

55

Yonemistu Oxidation Proposed Mechanism

Yonemistsu, O. Heterocycles 1979, 12, 1457

NH

HNR'

O

N

HNR'

O

OH

OH

Cl CN

CNCl

R

R

O

O

Cl

Cl CN

CNN

HNR'

OR

H

O

O

Cl CN

CNCl++

P.T.

N

HNR'

OR

O

OH

Cl CN

CNCl+

N

HNR'

OR

O

OH

Cl CN

CNCl

HH

+

+

Page 56: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

56

Yonemistu Oxidation Proposed Mechanism

N

HNR'

O

H2O

NH

HNR'

O

HO

DDQ

N

HNR'

O

HO

NH

HNR'

O

O

Tautomerization

Anhydrous

NH

NO

R'

DDQ

Tautomerization

R

R

R

R

R

N

NO

R'

R

NH

NO

R'

R

Yonemistsu, O. Heterocycles 1979, 12, 1457

If R' is electron-donating: cyclization goes faster

If R has a carbonyl substituent: tautomerization is facilitate

Page 57: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

57

Synthesis of Diazonamide AHarran’s Group

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Harran, P. G. Angew. Chem., Int. Ed. 2003, 42, 4961

H2N

Me MeH

O

N CO2Me

NH Br

HBr

TBTU, (iPr)2NEt, DMF

91%

NH

OMeMe

ArO2SHN

HO

O

NCO2Me

NH

BrAr= 2-NO2Ph

OH

ArO2SHNO

OH

TBTU:

NN

N

ON

N-BF4

Page 58: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

58

Synthesis of Diazonamide AHarran’s Group

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Harran, P. G. Angew. Chem., Int. Ed. 2003, 42, 4961

NH

OMeMe

ArO2SHN

HO

O

NCO2Me

NH

BrAr= 2-NO2Ph

ArO2SHNO

HN

Me MeH

O

N

ONH Br

CO2Me

PhI(OAc)2 (1.1 equiv)LiOAc (2 equiv)CF3CH2OH-20oC

ArO2SHNO

HN

Me MeH

O

N

O

CO2Me

NH Br

H

N

MeMe

O

NCO2Me

NH

Br

OArO2SHN

O

20-25%7-8% ~15% (1:1)

H

Page 59: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

59

Oxidative Formal Cycloaddition Proposed MechanismGeneration of the Phenoxenium Ion

PhI(OAc)2 AcOHR

OH

R

OIPh

OAc

Dissociation

R

O

+ PhI + AcO-

Harran, P. G. Angew. Chem., Int. Ed. 2003, 42, 4961Antus, S.; Pelter, A. J. Chem. Soc., Perkin Trans. 1 1999, 379

Page 60: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

60

Oxidative Formal Cycloaddition Proposed Mechanism

Calculations have shown preference for a left handed conformation

Major

Minor

Left handed conformation

Right handed conformation

Harran, P. G. Angew. Chem., Int. Ed. 2003, 42, 4961

-H+

-H+

O

NH

Br

N

O

CO2Me

O

N

O

CO2Me

NH

N

O

CO2Me

NHO

O

N

ONH Br

CO2Me

H

Br Br

NH

Br

N

O

CO2Me

O

N

O

CO2Me

NH

N

O

CO2Me

NHOBr BrO

O

N

O

CO2Me

NH Br

H

* ** *

* ** *

Page 61: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

61

Synthesis of Diazonamide AHarran’s Group

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

ArO2SHNO

HN

Me MeH

O

N

ONH Br

CO2Me

Ar=2-NO2Ph

1) PhSH, Na2CO3, DMF2) Teoc-Cl, DCM, K2CO3(aq)

80% (2 steps) TeocHNO

HN

Me MeH

O

N

ONH Br

CO2H

3) LiOH, MeOH(aq)99%

Teoc: OSi

O

TeocHNO

HN

Me MeH

O

N

ONH Br

HN

O

NH

OAc

1) TBTU, (iPr)2NEt (2 equiv.), DMF

NH

OH

NH2

HCl

(1.1 equiv.)

91%

2) Ac2O, Pyridine, DCM/THF

95%Harran, P. G. Angew. Chem., Int. Ed. 2003, 42, 4961

Page 62: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

62

Synthesis of Diazonamide AHarran’s Group

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

TeocHNO

HN

Me MeH

O

N

ONH Br

HN

O

NH

OAc

DDQ (2.2 equiv)

THF/H2O (9:1)86%

TeocHNO

HN

Me MeH

O

N

ONH Br

HN

O

NH

OAc

O

PPh3, (CCl3)2, NEt3, DCM

55%

TeocHNO

HN

Me MeH

O

N

ONH Br

O

N

NH

OAc

Harran, P. G. Angew. Chem., Int. Ed. 2003, 42, 4961

Page 63: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

63

Synthesis of Diazonamide AHarran’s Group

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Single atropisomer

Harran, P. G. Angew. Chem., Int. Ed. 2003, 42, 4961

TeocHNO

HN

Me MeH

O

N

ONH Br

O

N

NH

OAc

hv (300nm), CH3CN/H2O (3:1) 3 mM

LiOH (2 equiv.)r.t, 3h

TeocHNO

HN

Me MeH

O

N

ONH

NH

O

N

OH72%

Page 64: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

64

TeocHNO

HN

Me MeH

O

N

ONH Br

O

N

NH

OO

LiOH(aq) TeocHNO

HN

Me MeH

O

N

ONH Br

O

N

NH

O

NHBr

O

NH

O

N

hv (300nm)

NHBr

O

NH

O

N

LiLiOH(aq)

-LiBr

NH

NH

O

N

O

H

Tautomerization

NH

NH

O

N

OH

* * *

*

Proposed Mechanism of the Photoinduced Macrocycle Formation

Conformational rigidity places the two arenes in the right position to generate only one atropisomer

Harran, P. G. Angew. Chem., Int. Ed. 2003, 42, 4961

Page 65: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

65

Synthesis of Diazonamide AHarran’s Group

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

TeocHNO

HN

Me MeH

O

N

ONH

NH

O

N

OH

1) O

O2N

SCF3

O O

K2CO3, DMF87%

2) 20% Pd/C, 1atm H2 EtOAc/MeOH

96%

TeocHNO

HN

Me MeH

O

N

ONH

NH

O

N

TeocHNO

HN

Me MeH

O

N

ONH

NH

O

N

OS

CF3

OO

Harran, P. G. Angew. Chem., Int. Ed. 2003, 42, 4961

Page 66: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

66

Synthesis of Diazonamide AHarran’s Group

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

TeocHNO

HN

Me MeH

O

N

ONH

NH

O

N

TeocHNO

HN

Me MeH

O

N

ONH

NTeoc

O

N

i) O O O

O O

NEt3, THFii) Teoc-Cl, NEt3iii) Pd(PPh3)4 (5 mol%) Morpholine (5 equiv.), 0oC

78%

Teoc: OSi

O

Harran, P. G. Angew. Chem., Int. Ed. 2003, 42, 4961

Page 67: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

67

Synthesis of Diazonamide AHarran’s Group

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Harran, P. G. Angew. Chem., Int. Ed. 2003, 42, 4961Guetté, J.-P.; Lemaire, M.; Guy, A. Tetrahedron 1982, 38, 2339

TeocHNO

HN

Me MeH

O

N

ONH

NTeoc

O

N

TeocHNO

HN

Me MeH

O

N

ONH

NTeoc

O

N Cl

Cl

OCl

ClCl

ClCl

Cl

DMF30-50%

Page 68: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

68

Synthesis of Diazonamide AHarran’s Group

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

TeocHNO

HN

Me MeH

O

N

ONH

N

O

N Cl

Cl

H2NO

HN

Me MeH

O

N

ONH

NH

O

N Cl

Cl

TAS-F (5 equiv.)DMF

TAS-F:

NS

N

N+

SiF

F

-

O

SiMe3

O

- SiFMe3- CH2CH2- CO295%

Harran, P. G. Angew. Chem., Int. Ed. 2003, 42, 4961

Page 69: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

69

Synthesis of Diazonamide AHarran’s Group

H2NO

HN

Me MeH

O

N

ONH

NH

O

N Cl

Cl

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

OH

OHO

Me Me

(1.1 equiv.)P

O

EtO OEtCN

N

O

, DMF

90%

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Diazonamide A!

Harran, P. G. Angew. Chem., Int. Ed. 2003, 42, 4961

Page 70: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

70

Overview of Harran’s Group Synthesis

HN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Convergent synthesis of 19 steps 9 steps in the longest linear sequence (overall yield: 8%)

Synthesis based on the possible biosynthesis of the natural product

Key steps: - Annulation involving phenoxenium ion- Photoinduced macrocycle formation

Harran, P. G. Angew. Chem., Int. Ed. 2003, 42, 4961

Page 71: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

71

Conclusion

Structure revisionHN

OHO

Me Me

O

HN

Me MeH

O

N

ONH

NH

ClO

N Cl

Actual structure

K. C. Nicolaou’s group synthesis: -39 steps - Unprecedented hetero pinacol macrocyclization

P.G. Harran’s group synthesis: -19 steps - Inspired by the biosynthesis of the molecule

HN

OH2N

Me Me

O

HN

Me MeH

O

N

ONH

ClO

N Cl

OHOH

Originally proposed structure

Page 72: 1 Diazonamide A: The Long Story of a Misunderstood Molecule Seminar presented by Elisia Villemure February 14, 2008

72

Acknowledgment

Prof Keith Fagnou

David LapointeMarc LafranceBenoit LiegaultDaniel BlackDave Stuart

Megan ApSimonNicole BlaquiereDerek SchipperLaurence Caron

Mégan Bertrand-LaperleDaniel Shore

Sophie RousseauxChris Whipp

Malcolm HuestisCatherine Lebel

Ho-Yan SunDoris Lee