brenda tutorial · 2020. 7. 13. · brenda via quick search and enzyme summary page. clicking on...
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BRENDA Tutorial
Word Maps
Word Maps in BRENDA
visualization of the enzyme-relatedterms published in the literature for
• Enzymes• Organisms
You can directly searchfor an EC number
On the result page…
Clicking on the ligandname leads to theLigand Summary Page
On the result page…
If you click on thedisease term you getfurther information on the disease query page
On the result page…
Clicking on the applicationterm leads to furtherinformation on theapplication query page
On the result page…
Click on the organismname to go to thecorresponding TaxTreeentry in BRENDA
You can directly search for an organism byentering an organism name:
• scientific name• synonyms
Synonym for Triticum aestivum
On the result page…
On the result page…
The word map displays all published information linkedto the searched organism:
• enzyme• other organisms• ligands• human diseases• plant traits• plant pathogens• habitats
On the result page…
If you click on the enzyme name, youwill get (if available in BRENDA) further inormation
On the result page…
By clicking on the ligand name youwill you be lead (if available) tothe Ligand Summary Page
If you click on a term, all knownplant diseases containing thisdisease term are listed
On the result page…
On the result page…
If you click on the organism nameyou will open the link to the NEW Organism Summary Page…
…to get more detailed information on:
• synonyms• the classification in TaxTree• all the enzymes of the organism in BRENDA• source / tissue and localization entries• further links to the NCBI Taxonomy, PubMed, andGenomes
Display of Enzyme Word Maps in BRENDA via
Quick Search andEnzyme Summary Page
Clicking on the iconwill open the Word Map in a pop-upwindow or…
…or you can go the Enzyme Summary Page to displaythe Word Map and getfurther information
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