chi-square goodness of fit plot of real and simulated...
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T u k e y g o o d n e s s o f f i t p l o t o f r e a l a n d s i m u l a t e d c a p t u r e h i s t o r i e sTukey goodness of fit from simulated capture histories
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T u k e y g o o d n e s s o f f i t f r o m a c t u a l c a p t u r e h i s t o r i e s
3 4 5 6 7 8 9 1 0 1 1 1 2 1 3 1 4 1 5 1 6 1 7 1 8
C h i - s q u a r e g o o d n e s s o f f i t p l o t o f r e a l a n d s i m u l a t e d c a p t u r e h i s t o r i e sChi-square goodness of fit from simulated capture histories
0
1 0 0
2 0 0
3 0 0
4 0 0
5 0 0
6 0 0
7 0 0
C h i - s q u a r e g o o d n e s s o f f i t f r o m a c t u a l c a p t u r e h i s t o r i e s
0 1 0 0 2 0 0 3 0 0 4 0 0 5 0 0 6 0 0 7 0 0
C h i - s q u a r e g o o d n e s s o f f i t p l o t o f r e a l a n d s i m u l a t e d c a p t u r e h i s t o r i e sChi-square goodness of fit from simulated capture histories
1 0
1 0 0
1 0 0 0
C h i - s q u a r e g o o d n e s s o f f i t f r o m a c t u a l c a p t u r e h i s t o r i e s
1 0 1 0 0 1 0 0 0
G o o d n e s s o f f i t p l o t b a s e d o n r e a l a n d s i m u l a t e d d e v i a n c e sDeviance from simulated datasets
1 0
2 0
3 0
4 0
5 0
6 0
D e v i a n c e f r o m a c t u a l h i s t o r i e s
1 0 2 0 3 0 4 0 5 0 6 0 7 0
S t a n d a r d i z e d m e a n r e s i d u a l s c o n d i t i o n a l u p o n b e i n g o b s e r v a b l eStandardized residual (o-e)/sqrt(e)
- 2
- 1
0
1
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l o g 1 0 ( E x p e c t e d c o u n t f o r h i s t o r i e s a v e r a g e d o v e r G i b b s s t e p s )
- 2 - 1 0 1 2 3 4 5
* 2 1 2
B o x p l o t s o f S t a n d a r d i z e d r e s i d u a l s c o n d i t i o n a l u p o n b e i n g o b s e r v a b l eStandardized residual (o-e)/sqrt(e)
- 4
- 3
- 2
- 1
0
1
2
3
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l o g 1 0 ( E x p e c t e d c o u n t f o r h i s t o r i e s a v e r a g e d o v e r G i b b s s t e p s )
- 2 - 1 0 1 2 3 4 5
S t a n d a r d i z e d r e s i d u a l s b a s e d o n f u l l c a p t u r e h i s t o r y a r r a y
t y p e 2 3
Standardized residual (o-e)/sqrt(e)
- 2
- 1
0
1
2
3
4
5
l o g ( E x p e c t e d c o u n t f o r h i s t o r i e s a v e r a g e d o v e r G i b b s s t e p s )
- 7 - 6 - 5 - 4 - 3 - 2 - 1 0 1 2 3 4 5
S t a n d a r d i z e d r e s i d u a l s b a s e d o n f u l l c a p t u r e h i s t o r y a r r a y - r e s t r i c t e d r a n g e o n Y a x i s
t y p e 2 3
Standardized residual (o-e)/sqrt(e)
- 5
- 4
- 3
- 2
- 1
0
1
2
3
4
5
l o g ( E x p e c t e d c o u n t f o r h i s t o r i e s a v e r a g e d o v e r G i b b s s t e p s )
- 7 - 6 - 5 - 4 - 3 - 2 - 1 0 1 2 3 4 5
4 . 2 2 8 2 3 0 8 0 5 4
t r a c e p l o t s o f g i b b s s t e p sp a r m _ t y p e = B i r t h Y r
p i m 1 2 3 4 5 6
e s t i m a t e
0 . 1
0 . 2
0 . 3
0 . 4
0 . 5
0 . 6
0 . 7
0 . 8
0 . 9
g i b b s _ s a m p l e
1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 4 0 0 0 0 5 0 0 0 0 6 0 0 0 0 7 0 0 0 0 8 0 0 0 0 9 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0
t r a c e p l o t s o f g i b b s s t e p sp a r m _ t y p e = B i r t h s
p i m 1 2
e s t i m a t e
0 . 0
0 . 1
0 . 2
0 . 3
0 . 4
0 . 5
0 . 6
0 . 7
0 . 8
0 . 9
1 . 0
g i b b s _ s a m p l e
1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 4 0 0 0 0 5 0 0 0 0 6 0 0 0 0 7 0 0 0 0 8 0 0 0 0 9 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0
t r a c e p l o t s o f g i b b s s t e p sp a r m _ t y p e = N s i
p i m 1 . 0 0 1 . 0 1 1 . 0 2 2 . 0 0 2 . 0 12 . 0 2 3 . 0 0 3 . 0 1 3 . 0 2
e s t i m a t e
1 0 0 0 0 0
2 0 0 0 0 0
3 0 0 0 0 0
4 0 0 0 0 0
5 0 0 0 0 0
6 0 0 0 0 0
7 0 0 0 0 0
8 0 0 0 0 0
9 0 0 0 0 0
1 0 0 0 0 0 0
1 1 0 0 0 0 0
1 2 0 0 0 0 0
1 3 0 0 0 0 0
1 4 0 0 0 0 0
g i b b s _ s a m p l e
1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 4 0 0 0 0 5 0 0 0 0 6 0 0 0 0 7 0 0 0 0 8 0 0 0 0 9 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0
t r a c e p l o t s o f g i b b s s t e p sp a r m _ t y p e = P c
p i m 1 2 3 4 5 6
e s t i m a t e
0 . 0 0
0 . 0 1
0 . 0 2
0 . 0 3
0 . 0 4
0 . 0 5
0 . 0 6
0 . 0 7
0 . 0 8
0 . 0 9
0 . 1 0
g i b b s _ s a m p l e
1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 4 0 0 0 0 5 0 0 0 0 6 0 0 0 0 7 0 0 0 0 8 0 0 0 0 9 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0
t r a c e p l o t s o f g i b b s s t e p sp a r m _ t y p e = P h i
p i m 1 2 3 4
e s t i m a t e
0 . 4
0 . 5
0 . 6
0 . 7
0 . 8
0 . 9
1 . 0
g i b b s _ s a m p l e
1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 4 0 0 0 0 5 0 0 0 0 6 0 0 0 0 7 0 0 0 0 8 0 0 0 0 9 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0
t r a c e p l o t s o f g i b b s s t e p sp a r m _ t y p e = P l o s s
p i m 1 2 3 4 1 1 1 2
e s t i m a t e
0 . 0
0 . 1
0 . 2
0 . 3
0 . 4
0 . 5
0 . 6
0 . 7
0 . 8
0 . 9
1 . 0
g i b b s _ s a m p l e
1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 4 0 0 0 0 5 0 0 0 0 6 0 0 0 0 7 0 0 0 0 8 0 0 0 0 9 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0
t r a c e p l o t s o f g i b b s s t e p sp a r m _ t y p e = P o p S i z e
p i m 1
e s t i m a t e
8 0 0 0 0 0
9 0 0 0 0 0
1 0 0 0 0 0 0
1 1 0 0 0 0 0
1 2 0 0 0 0 0
1 3 0 0 0 0 0
1 4 0 0 0 0 0
g i b b s _ s a m p l e
1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 4 0 0 0 0 5 0 0 0 0 6 0 0 0 0 7 0 0 0 0 8 0 0 0 0 9 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0
t r a c e p l o t s o f g i b b s s t e p sp a r m _ t y p e = P s i
p i m 1 2 3 4
e s t i m a t e
0 . 0
0 . 1
0 . 2
0 . 3
0 . 4
0 . 5
0 . 6
0 . 7
0 . 8
0 . 9
1 . 0
g i b b s _ s a m p l e
1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 4 0 0 0 0 5 0 0 0 0 6 0 0 0 0 7 0 0 0 0 8 0 0 0 0 9 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0
c u m u l a t i v e a v e r a g e o f t r a c e p l o tp a r m _ t y p e = B i r t h Y r
p i m 1 2 3 4 5 6
m a _ e s t i m a t e
0 . 2
0 . 3
0 . 4
0 . 5
0 . 6
0 . 7
0 . 8
g i b b s _ s a m p l e
1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 4 0 0 0 0 5 0 0 0 0 6 0 0 0 0 7 0 0 0 0 8 0 0 0 0 9 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0
c u m u l a t i v e a v e r a g e o f t r a c e p l o tp a r m _ t y p e = B i r t h s
p i m 1 2
m a _ e s t i m a t e
0 . 0
0 . 1
0 . 2
0 . 3
0 . 4
0 . 5
0 . 6
0 . 7
0 . 8
0 . 9
1 . 0
g i b b s _ s a m p l e
1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 4 0 0 0 0 5 0 0 0 0 6 0 0 0 0 7 0 0 0 0 8 0 0 0 0 9 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0
c u m u l a t i v e a v e r a g e o f t r a c e p l o tp a r m _ t y p e = G O C _ c h i _ p
p i m 0
m a _ e s t i m a t e
0 . 0 0
0 . 0 1
0 . 0 2
0 . 0 3
0 . 0 4
0 . 0 5
0 . 0 6
0 . 0 7
0 . 0 8
0 . 0 9
0 . 1 0
0 . 1 1
0 . 1 2
0 . 1 3
0 . 1 4
0 . 1 5
g i b b s _ s a m p l e
1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 4 0 0 0 0 5 0 0 0 0 6 0 0 0 0 7 0 0 0 0 8 0 0 0 0 9 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0
c u m u l a t i v e a v e r a g e o f t r a c e p l o tp a r m _ t y p e = G O C _ c h i _ r e a l
p i m 0
m a _ e s t i m a t e
5 0
5 1
5 2
5 3
5 4
5 5
5 6
5 7
5 8
5 9
6 0
6 1
6 2
6 3
g i b b s _ s a m p l e
1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 4 0 0 0 0 5 0 0 0 0 6 0 0 0 0 7 0 0 0 0 8 0 0 0 0 9 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0
c u m u l a t i v e a v e r a g e o f t r a c e p l o tp a r m _ t y p e = G O C _ c h i _ s i m
p i m 0
m a _ e s t i m a t e
2 7
2 8
2 9
3 0
3 1
3 2
3 3
3 4
3 5
3 6
3 7
3 8
3 9
4 0
g i b b s _ s a m p l e
1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 4 0 0 0 0 5 0 0 0 0 6 0 0 0 0 7 0 0 0 0 8 0 0 0 0 9 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0
c u m u l a t i v e a v e r a g e o f t r a c e p l o tp a r m _ t y p e = G O D _ d e v _ p
p i m 0
m a _ e s t i m a t e
0 . 0 0
0 . 0 1
0 . 0 2
0 . 0 3
0 . 0 4
0 . 0 5
0 . 0 6
0 . 0 7
0 . 0 8
g i b b s _ s a m p l e
1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 4 0 0 0 0 5 0 0 0 0 6 0 0 0 0 7 0 0 0 0 8 0 0 0 0 9 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0
c u m u l a t i v e a v e r a g e o f t r a c e p l o tp a r m _ t y p e = G O D _ d e v _ r e a l
p i m 0
m a _ e s t i m a t e
4 0
5 0
6 0
7 0
g i b b s _ s a m p l e
1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 4 0 0 0 0 5 0 0 0 0 6 0 0 0 0 7 0 0 0 0 8 0 0 0 0 9 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0
c u m u l a t i v e a v e r a g e o f t r a c e p l o tp a r m _ t y p e = G O D _ d e v _ s i m
p i m 0
m a _ e s t i m a t e
2 7
2 8
2 9
3 0
3 1
3 2
3 3
3 4
3 5
3 6
3 7
3 8
3 9
4 0
g i b b s _ s a m p l e
1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 4 0 0 0 0 5 0 0 0 0 6 0 0 0 0 7 0 0 0 0 8 0 0 0 0 9 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0
c u m u l a t i v e a v e r a g e o f t r a c e p l o tp a r m _ t y p e = G O T _ t u k e y _ p
p i m 0
m a _ e s t i m a t e
0 . 0 0
0 . 0 1
0 . 0 2
0 . 0 3
0 . 0 4
0 . 0 5
0 . 0 6
0 . 0 7
0 . 0 8
0 . 0 9
0 . 1 0
0 . 1 1
0 . 1 2
0 . 1 3
g i b b s _ s a m p l e
1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 4 0 0 0 0 5 0 0 0 0 6 0 0 0 0 7 0 0 0 0 8 0 0 0 0 9 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0
c u m u l a t i v e a v e r a g e o f t r a c e p l o tp a r m _ t y p e = G O T _ t u k e y _ r e a l
p i m 0
m a _ e s t i m a t e
1 0
1 1
1 2
1 3
1 4
1 5
1 6
1 7
1 8
g i b b s _ s a m p l e
1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 4 0 0 0 0 5 0 0 0 0 6 0 0 0 0 7 0 0 0 0 8 0 0 0 0 9 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0
c u m u l a t i v e a v e r a g e o f t r a c e p l o tp a r m _ t y p e = G O T _ t u k e y _ s i m
p i m 0
m a _ e s t i m a t e
7
8
9
1 0
1 1
1 2
g i b b s _ s a m p l e
1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 4 0 0 0 0 5 0 0 0 0 6 0 0 0 0 7 0 0 0 0 8 0 0 0 0 9 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0
c u m u l a t i v e a v e r a g e o f t r a c e p l o tp a r m _ t y p e = N s i
p i m 1 . 0 0 1 . 0 1 1 . 0 2 2 . 0 0 2 . 0 12 . 0 2 3 . 0 0 3 . 0 1 3 . 0 2
m a _ e s t i m a t e
2 0 0 0 0 0
3 0 0 0 0 0
4 0 0 0 0 0
5 0 0 0 0 0
6 0 0 0 0 0
7 0 0 0 0 0
8 0 0 0 0 0
9 0 0 0 0 0
1 0 0 0 0 0 0
1 1 0 0 0 0 0
g i b b s _ s a m p l e
1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 4 0 0 0 0 5 0 0 0 0 6 0 0 0 0 7 0 0 0 0 8 0 0 0 0 9 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0
c u m u l a t i v e a v e r a g e o f t r a c e p l o tp a r m _ t y p e = P c
p i m 1 2 3 4 5 6
m a _ e s t i m a t e
0 . 0 0
0 . 0 1
0 . 0 2
0 . 0 3
0 . 0 4
0 . 0 5
0 . 0 6
0 . 0 7
0 . 0 8
g i b b s _ s a m p l e
1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 4 0 0 0 0 5 0 0 0 0 6 0 0 0 0 7 0 0 0 0 8 0 0 0 0 9 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0
c u m u l a t i v e a v e r a g e o f t r a c e p l o tp a r m _ t y p e = P h i
p i m 1 2 3 4
m a _ e s t i m a t e
0 . 5 10 . 5 20 . 5 30 . 5 40 . 5 50 . 5 60 . 5 70 . 5 80 . 5 90 . 6 00 . 6 10 . 6 20 . 6 30 . 6 40 . 6 50 . 6 60 . 6 70 . 6 80 . 6 90 . 7 00 . 7 10 . 7 20 . 7 30 . 7 40 . 7 50 . 7 60 . 7 70 . 7 80 . 7 90 . 8 00 . 8 10 . 8 20 . 8 30 . 8 40 . 8 50 . 8 60 . 8 70 . 8 80 . 8 90 . 9 00 . 9 10 . 9 20 . 9 3
g i b b s _ s a m p l e
1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 4 0 0 0 0 5 0 0 0 0 6 0 0 0 0 7 0 0 0 0 8 0 0 0 0 9 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0
c u m u l a t i v e a v e r a g e o f t r a c e p l o tp a r m _ t y p e = P l o s s
p i m 1 2 3 4 1 1 1 2
m a _ e s t i m a t e
0 . 0
0 . 1
0 . 2
0 . 3
0 . 4
0 . 5
0 . 6
0 . 7
0 . 8
0 . 9
1 . 0
g i b b s _ s a m p l e
1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 4 0 0 0 0 5 0 0 0 0 6 0 0 0 0 7 0 0 0 0 8 0 0 0 0 9 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0
c u m u l a t i v e a v e r a g e o f t r a c e p l o tp a r m _ t y p e = P o p S i z e
p i m 1
m a _ e s t i m a t e
9 2 0 0 0 0
9 3 0 0 0 0
9 4 0 0 0 0
9 5 0 0 0 0
9 6 0 0 0 0
9 7 0 0 0 0
9 8 0 0 0 0
9 9 0 0 0 0
1 0 0 0 0 0 0
1 0 1 0 0 0 0
1 0 2 0 0 0 0
1 0 3 0 0 0 0
1 0 4 0 0 0 0
1 0 5 0 0 0 0
1 0 6 0 0 0 0
1 0 7 0 0 0 0
1 0 8 0 0 0 0
1 0 9 0 0 0 0
g i b b s _ s a m p l e
1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 4 0 0 0 0 5 0 0 0 0 6 0 0 0 0 7 0 0 0 0 8 0 0 0 0 9 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0
c u m u l a t i v e a v e r a g e o f t r a c e p l o tp a r m _ t y p e = P s i
p i m 1 2 3 4
m a _ e s t i m a t e
0 . 2
0 . 3
0 . 4
0 . 5
0 . 6
0 . 7
0 . 8
g i b b s _ s a m p l e
1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 4 0 0 0 0 5 0 0 0 0 6 0 0 0 0 7 0 0 0 0 8 0 0 0 0 9 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0
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