frige’s ihg at glance
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FRIGE’s IHG AT GLANCEFRIGE’s IHG AT GLANCEISO 9001-2008
RESEARCH ORGANIZATIONRecognized By Govt. of India,
Ministry of Science and Technology
GENETIC CENTREFRIGE HOUSEAHMEDABAD-380 015
Tele: +91-79-26921414/65128444Fax: +91-79-26921415Email: jshethad1@gmail.comwww.geneticcentre.org
• To carry out basic and translation research in Genetics and Endocrinology
• To propagate scientific temperament in the state
• To create HRD in Biotechnology and Genetic Science
AIMS & OBJECTIVES
Activities at FRIGEActivities at FRIGE
• Cytogenetics
• Molecular cytogenetics
• Molecular Genetics
• Biochemical Genetics
• Basic research in Birth defects and Diabetes
Cytogenetic Study at FRIGECytogenetic Study at FRIGE
CLINICAL DIAGNOSIS TOTAL CASES NORMAL ABNORMAL
DOWN SYNDROME 781 83 698
RFL/BOH 4168 3996 172
PRIMARY AMENORRHOEA 378 265 113
MISCELLANEOUS 917 807 110
HYPOGONADISM 183 150 33
AMBIGUOUS GENITALIA 259 241 18
CANCER 904 408 496
ABORTUS 1704 1286 418
PRENATAL 1285 1190 95
TOTAL 10579 8426 2153
Indigenous DNA Rotor
Array CGH StudyArray CGH Study
arr cgh 18p11.332p11.31 (chr18:1-14,918,854)(hg 18-NCBI build36)x3There is a 14.9 Mb 18p11.32p11.31 duplication.
(47,XX,+mar.ish i(18)(pter q11.1::q11.1pter)(cep18+,subtelpter++),arr 18p11.332p11.31(227,585-14,918,854)x4
Screening for various storage disordersScreening for various storage disorders
• Screening for Mucopolysaccharidosis
(Urinary GAG qualitative and quantitative study from urine)
• Screening for I-cell disease
(Plasma study with p-NCS substrate)
• Screening for Gaucher/NPD A or B diseases
(Plasma Chitotriosidase study)
Sheth J, Sheth F, Oza N, Gambhir P, Dave U, Shah R. Plasma Chitotriosidase activity in
children with lysosomal storage disorders. Ind J Pediatrics .77:203-205. 2010.
Sheth J, Mistri M, Kamate M, Vaja S, Sheth F: Diagnostic strategy for mucolipidosis II/III.
Ind Pediatrics 49:975-977, 2012.
Screening for storage disordersQualitative GAG analysis by electrophoresis for MPS screening Plasma chitotriosidase for screening of Gaucher’s disease and NPD A/B I-cell disease screening by enzyme study from plasma
Lysosomal enzyme study available at FRIGE
Mucopolysaccharide Panel : -iduronidase, -iduronidate sulphatase, Heparan sulphamidase, N-Ac--glucosaminidase, -galactose-6-sulphate sulphatase, -galactosidase, Aryl sulphatase B, -glucuronidase,
Glycoproteins Degradation : -fucosidsase, -mannosidaseDefects in glycolipids and lipids : Hexosaminidase A & Total, Sphingomyelinase, -glucosidaseDefects in sulphatides : Arylsulphatase A, -galactocerebrosidaseGlycogen Storage Disorder : -1-4-glucosidaseGlobotriaosylceramide : -galactosidaseDefects in protein degradation : Tripeptidyl Peptidase I, Palmitoyl Protein ThioesteraseDefects in degradation of triglycerides and cholesteryls ester : Acid LipaseDefects in lysosomal transporters : Silaic acidDefects in lysosomal trafficking proteins : Niemann Pick disease C by Fillipin Stain method
Lysosomal enzyme study available at FRIGELysosomal enzyme study available at FRIGE
Burden of LSD’s in IndiaBurden of LSD’s in India
Prevalance of LSD's in western India total=1262, Abnormal=450 (35.66%), Normal=812 (64.34%)
21
1411
4
27
4
18
5
34
43
30
71
35
1
43
18 19
73
12
5
24
0
10
20
30
40
50
60
70
80
Typr of LSDs
No
. o
f p
ati
en
ts
Defects in degradation of gycolipids and
Defects in degrdation of
Defects in degradation of sulphatides
Defects in degerdarion of glycogenDefects in lysosomal transportes
Defects in lysosomal traff icking proteins
Defects in degredation of proteins
Prenatal Diagnosis for Lysosomal storage Prenatal Diagnosis for Lysosomal storage disorders disorders
[Total: 178, Normal/ Carrier: 133 (74.8%), Affected: 45 (25.2%)]
Tandom Mass Spectroscopy for NBSTandom Mass Spectroscopy for NBS
Total=126Abnormal=18 (14.29%), Normal=108 (85.71%)
Molecular Diagnosis for Storage disorders in India : Molecular Diagnosis for Storage disorders in India : Tay-sachs diseaseTay-sachs disease
p.E462V 20 %
c.1278insTATC 14 %
p. D322Y 11 %
Mehul Mistri; Parag M Tamhankar, Frenny Sheth; Daksha Sanghavi; Pratima Kondurkar; Swapnil Patil; Susan Idicula-Thomas; Sarita Gupta; Jayesh Sheth (2012) Identification of novel mutations in HEXA gene in children affected with Tay-Sachs disease from India. PLoS ONE 7(6):e39122. Doi;10.1371/journal.pone.0039122
Molecular Diagnosis for Storage disorders in India: Molecular Diagnosis for Storage disorders in India: Sandhoff diseaseSandhoff disease
Sheth J, Mistri M, Ankleshwaria C Tamhankar P, Bavdekar A, Datar C, Kamate M, Gupta S, Mehta S, Sheth F. Molecular analysis for Gaucher, Tay-sach’s and Sandhoff disease in India Patients. 62th Annual meeting of ASHG-2012. (Abstract ID: 2803W)
Molecular Diagnosis for Storage disorders in India: Molecular Diagnosis for Storage disorders in India: Gaucher diseaseGaucher disease
I II III IV VIV VIIIVII IX X XI
L444P,R463C, I466S/?
R359Q,G355D,V352M,S356F, R329C, E326K
R395C
R496C
Sheth and Chitra et al: Unpublished work
G289A
•L444P as predominant mutant allele in 65.6 % (21/32) India GD patients
•Exon 8 and 10 are the hotspot region of the GBA gene where 93.74% of mutant allele are present
Exons
UTR
IntronNovel mutationsGreen
Reported mutationsBlack
Current Diabetes Project : Current Diabetes Project :
Effect Pro12Ala polymorphism and BMI on A1C level
rs1801282, CCA>GCA, g.96890 C>G, c.34C>G, p.Pro12Ala
Avisek Majumder, Jayesh J Sheth, Frenny Sheth et al. Effect of PPAR2 gene polymorphism (Pro12Ala) on HbA1C and its association with BMI in Type 2 diabetes subjects from Western India; Endocr Rev 2013; Vol. 34
Title: “Effect of genetic variations in PPARG2 and ADRB3 gene in type 2 diabetic(T2D) subjects of Gujarat in relation to drug response” PI: Dr. JJSheth, Co-PI- Dr. FJ Sheth, JRF: A. Majumder.
Exons
UTR
Intron
Pro/Pro: 49Pro/Ala: 39Ala/Ala: 1
Pro/Pro: 125Pro/Ala: 21Ala/Ala: 1
Subject No
Association of Pro12Ala polymorphism & Vitamin D3 level in Hb-glycation.
BMI ≤25 kg/m2: 18 BMI ≥25 kg/m2: 25
Subject No BMI ≤25 kg/m2: 103 BMI ≥25 kg/m2: 90
Training given to biotech students (2005-13)Training given to biotech students (2005-13)
Ahmedabad
Anand
Jaipur
Mumbai
Gwalior
Banglore
Saurashtra
Chennai
Delhi
Training givenTo international Students
Iraq : 2Scotland : 1U. S. A. : 2Dubai : 1Nigeria : 2
Total=137
Highlights
Identified gene mapping for ‘Clouston Syndrome’ in collaboration with Geneva University. U Radhakrishna, J Blouin, H Mehenni, T Mehta, F Sheth, J Sheth, J Solanki, S Antonarakis. (1997) The gene for Autosomal Dominant Hidrotic Ectodermal Dysplasia (Clouston Syndrome) in a large Indian family maps to the 13q11-q12.1 pericentromeric region. American Journal of Medical Genetics. 71: 80-86.
Coined the terminology of ‘Sub-biochemical Hypothyroidism in cases with normal TSH using TRH’. J Sheth, P Thakor, B Trivedi, N Shah, R Vaidya. (1999) Sub-biochemical hypothyroidism: An exaggerated TSH response to TRH. J of Asso of Physician of India. 47(3): 275-279.
Demonstrated for the first time about MTHFR (CT) allele to be commonly observed in our population & reported about the role of protein and Vitamin B12 together with folate interacting with unknown genes in folate metabolism pathway. J. Sheth, F. Sheth (2003). Gene Polymorphism and Folate metabolism: A Maternal risk factor for Down syndrome? Indian Pediatrics 40(2):115-123.
Demonstrated the role of Vitamin B12 in neural tube defects (NTD’s). J. Sheth,F. Sheth, N. Pandya, R. Vaidya (2003) Recurrent neural tube defects and Deficiency of Vitamin B12 beyond Folic Acid. The Journal of Obstetrics and Gynecology of India Nov/ Dec 2003:53 No 6 596-597.
K. Godbole, P. Gayathri, S. Gule, BV Sasirekha , A. Kanitkar-Damle , N. Memane, S. Suresh, J. Sheth, GR Chandak, CS Yajnik (2011). Maternal one carbon metabolism, MTHFR and TCN2 genotypes and neural tube defects in India. Birth Defects Res A Clin Mol Teratol. 91(9): 848-56. Doi: 10.1002/bdra.20841.
Highlights Developed indigenous FISH probes using BAC clones for various micro-deletion
syndromes and cancer. F Vinsheth, Z Antonella, A Luisa, A Shah, J Sheth, M Rocchi (2003). Cytogenetics and Fluorescence In-Situ Hybridization in detection of haematological Malignancies. Indian Journal of Cancer. 40(4): 135-139.
Demonstrated large series of Down syndrome children from Western part of India and showed non-classical Down syndrome is higher from this region. F Sheth, S Rao, M Desai, J Vin, J Sheth (2007). Cytogenetic Analysis of Clinical suspected Down syndrome cases in Gujarat. Indian Paediatrics. 44(10): 774-777.
First Indian study on non-invasive prenatal diagnosis of Down syndrome and other aneuploidy by ‘Triple Marker Study’ and established Indian norms for the study. J Sheth, F Sheth, N Oza, M Doshi (2008). Triple maker study in mid-trimester of pregnancy and risk of chromosomal abnormality: An Indian Experience. Indian Journal of Obstetrics and Gynecology. 58(2):142-146.
Only Centre in India to carry out study for ‘Cholesterol transport disorders (NPD-C)’ and ‘Glycogen storage disorders type-III’ by debranching enzyme study. J Sheth, F Sheth, N Oza (2008). Niemann-Pick type C disease. Indian Pediatr. ;45(6):505-7.
Study of ‘Cryptic Genomic Imbalance’ in cases having MCA and intellectual disability. J Andrieux, F Sheth (2009). CGH-Array study and its utility in children for detection of Constitutional and Acquired anomalies. Indian Journal of Experimental Biology. 47: 779-791
Highlights
Identified novel mutation for ‘Tay-Sach disease’ in Indian children in ‘HEXA gene’. M Mistri, P Tamhankar, F Sheth, D Sanghavi, P Kondurkar, S Patil, S Thomas, S Gupta, J Sheth (2012). Identification of novel mutations in HEXA gene in children affected with Tay Sachs disease from India. PLoS ONE. 7(6): e39122. doi:10.1371/journal.pone.0039122
Developed simple colorimetric method for screening of ‘Mucolipidosis-II/ III’. J. Sheth, M. Mistri, M. Kamate, S. Vaja, F. Sheth (2012). Diagnostic Strategy of Mucolipidosis II/III. Indian Pediatrics. 49(12): 975-977.
Demonstrated burden of ‘Lysosomal Storage Disorders’ in children from India. J. Sheth, M. Mistri, F. Sheth, R. Shah, A. Bavdekar, K. Godbole, N. Nanavaty, C. Datar, M. Kamate, N. Oza, C. Ankleshwaria, S. Mehta, M. Jackson (2013). Burden of Lysosomal Storage Disorders in India: Experience of 387 Affected Children from a Single Diagnostic Facility. JIMD Reports. DOI 10.1007/8904_2013_244.
Trained more than 200 students from biotechnology
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