network requirements from ukrainian biotechnology communities lubov n. shynkarenko fbb

Network requirements from Ukrainian Network requirements from Ukrainian Biotechnology communitiesBiotechnology communities

Lubov N. ShynkarenkoLubov N. Shynkarenko

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Modern biotechnologyModern biotechnology

• MARKET - 500 billions $ US

•Europe - 1570 companies

•USA - 1273 companies

•Health

•Agriculture

•Environmental

•Energy

•Industry

•Bioinformatics

Human genome - 1988

•3 billions $ US

•More than 30 countries

•Bioinformnetworks

•Genomics

•Proteomics

•Metabolomicsin vitro + in vivo

INSILICO

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From Genomics to From Genomics to ProductsProducts

Genotype PhenotypeReverse Genetics

Forward Genetics

GENE RNA Proteins Metabolites Organisme

Genomics Platform

ProteomeMetabolome

Profiling

B i o i n f o r m a t i c sTranscriptome

Markers

New Genes

New Trails

New Actions

New Products

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DNA

Sequence

Map

Bioinformatics strategyBioinformatics strategy

BioinformaticsPROTEOMICSPROTEOMICS

COMPUTATIONAL COMPUTATIONAL BIOLOGYBIOLOGY

EVOLUTIONARY EVOLUTIONARY BIOLOGYBIOLOGY GENETICSGENETICS

FUNCTIONAL FUNCTIONAL GENETICSGENETICS

STRUCTURALSTRUCTURALGENIMOCSGENIMOCS

METABOLOMICSMETABOLOMICS

PROTEIN INTERACTIONPROTEIN INTERACTIONNETWORKSNETWORKS CLINICAL CLINICAL

DATADATA

LITERATURELITERATURE

GENOM GENOM SEQUENCINGSEQUENCING

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Bioinformatics CENTERS AND Bioinformatics CENTERS AND NETWORKSNETWORKS

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World networksWorld networks - - 28 28 (centers, groups, (centers, groups, servers)servers)IBM - Structural bioinformatics Inc. IBM - Structural bioinformatics Inc.

(SBI)(SBI) (software, hardware and (software, hardware and WebSphere)WebSphere)RussiaRussia - - 6 6 (centers, groups, servers)(centers, groups, servers)

UkraineUkraine - - 0 0 (centers, groups, servers)(centers, groups, servers)

+ + (local structures - NASU, AMS, (local structures - NASU, AMS, UAA, cell’s collections, universities, UAA, cell’s collections, universities, industry)industry)

TASKS - formation national bionetworks TASKS - formation national bionetworks and integration to world bioinformatic and integration to world bioinformatic

spheresphere

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BIOTECHNOLOGY & BIOTECHNOLOGY & Bioinformatics in Ukrainian Bioinformatics in Ukrainian

EducationEducation

FACULTY of BIOTECNOLOGY and BIOENGINEERING 2001FACULTY of BIOTECNOLOGY and BIOENGINEERING 2001

National Technical University “KPI” National Technical University “KPI”

Department of Industrial Biotechnology

Spesiality - Industrial Biotechnology

Spesialization - BIOINFORMATICS

BIOINFORMATICIANS = Biotechnologists +Computer scientists +Computational biologist + Medics + other Professionals