analysis of mirnas with cluego and cluepedia - upmc · style se ect network anal sis start mode @...

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Analysis of miRNAs with ClueGO and CluePedia

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Page 1: Analysis of miRNAs with ClueGO and CluePedia - UPMC · Style Se ect Network Anal sis Start Mode @ clueG0 Function clueG0 Genes) CluePedia Options CluePedia Genes) CluePedia Options

Analysis of miRNAs with ClueGO and CluePedia

Page 2: Analysis of miRNAs with ClueGO and CluePedia - UPMC · Style Se ect Network Anal sis Start Mode @ clueG0 Function clueG0 Genes) CluePedia Options CluePedia Genes) CluePedia Options

Upload miRNAs in CluePedia

miRNA format should be e.g. : “hsa-miR-200a”

Page 3: Analysis of miRNAs with ClueGO and CluePedia - UPMC · Style Se ect Network Anal sis Start Mode @ clueG0 Function clueG0 Genes) CluePedia Options CluePedia Genes) CluePedia Options

Enrich miRNAs with target genes

Page 4: Analysis of miRNAs with ClueGO and CluePedia - UPMC · Style Se ect Network Anal sis Start Mode @ clueG0 Function clueG0 Genes) CluePedia Options CluePedia Genes) CluePedia Options

Upload miRNAs in CluePedia

miRNA format should be e.g. : “hsa-miR-200a”

Page 5: Analysis of miRNAs with ClueGO and CluePedia - UPMC · Style Se ect Network Anal sis Start Mode @ clueG0 Function clueG0 Genes) CluePedia Options CluePedia Genes) CluePedia Options

ClueGO functional analysis of target genes

In “CluePedia Options” Select 0 to see just the genes from the initial list or 1000 to see all genes from the termsTo add the mirnas & not found genes (under current selection parameters) in the network select: “Include not found markers”

Page 6: Analysis of miRNAs with ClueGO and CluePedia - UPMC · Style Se ect Network Anal sis Start Mode @ clueG0 Function clueG0 Genes) CluePedia Options CluePedia Genes) CluePedia Options

ClueGO CluePedia network with pathways, genes and miRNAs

Page 7: Analysis of miRNAs with ClueGO and CluePedia - UPMC · Style Se ect Network Anal sis Start Mode @ clueG0 Function clueG0 Genes) CluePedia Options CluePedia Genes) CluePedia Options

ClueGO CluePedia network with major pathways, genes and miRNAs

Page 8: Analysis of miRNAs with ClueGO and CluePedia - UPMC · Style Se ect Network Anal sis Start Mode @ clueG0 Function clueG0 Genes) CluePedia Options CluePedia Genes) CluePedia Options

ClueGO CluePedia network with pathways, genes and miRNAsSimilar analysis, with fusion