autopsy of cetaceans, 2002/03...island (n = 2). the beachcast carcasses ranged from freshly dead to...
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Autopsy of cetaceans includingthose incidentally caught incommercial fisheries, 2002/03
Pádraig J. Duignan and Gareth W. Jones
DOC SCIENCE INTERNAL SERIES 195
Published by
Department of Conservation
PO Box 10�420
Wellington, New Zealand
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DOC Science Internal Series is a published record of scientific research carried out, or advice given,
by Department of Conservation staff or external contractors funded by DOC. It comprises reports and
short communications that are peer-reviewed.
Individual contributions to the series are first released on the departmental website in pdf form.
Hardcopy is printed, bound, and distributed at regular intervals. Titles are also listed in the DOC
Science Publishing catalogue on the website, refer http://www.doc.govt.nz under Publications, then
Science and Research.
© Copyright January 2005, New Zealand Department of Conservation
ISSN 1175�6519
ISBN 0�478�22645�4
This report was prepared for publication by DOC Science Publishing; editing and layout by Ian
Mackenzie. Publication was approved by the Chief Scientist (Research, Development & Improvement
Division), Department of Conservation, Wellington, New Zealand.
In the interest of forest conservation, DOC Science Publishing supports paperless electronic
publishing. When printing, recycled paper is used wherever possible.
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CONTENTS
Abstract 5
1. Introduction 6
2. Materials and methods 7
2.1 Materials 7
2.2 Methods and necropsy protocol 8
2.2.1 Necropsy protocol 8
2.2.2 Stomach contents 9
2.2.3 Age determination 9
2.2.4 Reproductive status 10
3. Results 11
3.1 Morphometrics 11
3.2 Stomach contents 11
3.3 Age determination 11
3.4 Reproductive status 14
3.5 Pathology 16
4. Discussion 18
5. Acknowledgements 20
6. References 21
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5DOC Science Internal Series 195
Autopsy of cetaceans includingthose incidentally caught incommercial fisheries, 2002/03
Pádraig J. Duignan and Gareth W. Jones
New Zealand Wildlife Health Centre, Institute of Veterinary,
Animal and Biomedical Sciences, Massey University,
Private Bag 11�222, Palmerston North, New Zealand
A B S T R A C T
Morphological characteristics, estimated age, gender, reproductive status,
stomach contents and cause of death have been determined for 11 Hector�s
dolphins (Cephalorhynchus hectori hectori), one Maui�s dolphin
(Cephalorhynchus hectori maui), four common dolphins (Delphinus delphis),
and one bottlenose dolphin (Tursiops truncatus). The common dolphins and
one Hector�s dolphin were killed incidentally in commercial fishing operations.
The remaining Hector�s dolphins and the Maui�s dolphin were retrieved either
from set-nets (n = 1), or found beachcast along the west coast of the North
Island (n = 1), west coast of the South Island (n = 7), or east coast of the South
Island (n = 2). The beachcast carcasses ranged from freshly dead to skeletal
remains. The stomachs of five Hector�s dolphins had detectable remains
consisting of fish, otoliths, and fish bones. Fish and squid were equally
represented in the stomachs of the common dolphins. Age was estimated by
counting dentinal growth layer groups in stained sections of teeth. Two female
Hector�s dolphins were too decomposed to determine reproductive status but
the remaining two were immature. Of five male Hector�s dolphins, one was
pubertal, three immature, and one was too decomposed for examination of
gonads. The male Maui�s dolphin and the bottlenose dolphin were also
immature. Of the four common dolphins, two Hector�s dolphins, and the
bottlenose dolphin known to have been net-entangled, all had lesions
consistent with death from asphyxiation. Two of the nine beachcast Hector�s
dolphins had lesions indicative of entanglement, two did not appear to have
been entangled and parasitic pneumonia may have had a role in their death, one
died from acute blunt trauma of unknown origin, and four were too
decomposed to determine cause of death. The Maui�s dolphin died from
complications associated with Aspergillus fumigatus infection of the lungs.
Keywords: autopsy, morphology, Hector�s dolphin, Cephalorhynchus hectori
hectori, Maui�s dolphin, Cephalorhynchus hectori maui, common dolphins,
Delphinus delphis, bottlenose dolphin, Tursiops truncatus, New Zealand
© January 2005, New Zealand Department of Conservation. This paper may be cited as:
Duignan, P.J.; Jones, G.W. 2005: Autopsy of cetaceans including those incidentally caught in
commercial fisheries, 2002/03. DOC Science Internal Series 195. Department of
Conservation, Wellington. 22 p.
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6 Duignan & Jones�Autopsy of cetaceans, 2002/03
1. Introduction
The objective of this study was to fulfil the requirements of DOC contract CSL00/
3025 by recording and interpreting data on cetaceans submitted for autopsy.
These data included species, sex, size, body condition, age, reproductive status,
stomach contents, and cause of death. This report details the findings pertinent
to this objective and includes data on 11 Hector�s dolphins (Cephalorhynchus
hectori hectori), one Maui�s dolphin (Cephalorhynchus hectori maui), four
common dolphins (Delphinus delphis), and one bottlenose dolphin (Tursiops
truncatus) killed incidentally in fishing operations or found beachcast.
The Hector�s dolphin (Cephalorhynchus hectori) is a small coastal species and
New Zealand�s only endemic cetacean (Baker 1978). The species is divided
between at least four genetically distinct sub-populations, with a South Island
population of approximately 7300 individuals, and a North Island population
with fewer than 100 individuals (Ferreira & Roberts 2003). The North Island
population is genetically and morphologically distinct and is now called Maui�s
dolphin (Pichler et al. 1998; Baker et al. 2002). The South Island population has
a NZ threat classification of nationally vulnerable, while the North Island
population is listed as nationally critical. The life history characteristics of the
species are similar to other members of the genus Cephalorhynchus, such as
Commerson�s dolphin (C. commersoni) and are characterised by a low
potential for population growth (Lockyer et al. 1988; Slooten & Lad 1990). This,
combined with a low rate of female dispersal between populations, increases
the vulnerability of the species to local extinction if mortality rates exceed
recruitment. Entanglement appears to be one of the most significant factors
negatively impacting the species and was the impetus for establishment of a
Marine Mammal Sanctuary around Banks Peninsula in November 1988 (Dawson
& Slooten 1992) and in the Manukau Harbour and adjacent coast of the north-
western North Island in October 2003. Each year, particularly during the
summer months November to March, Hector�s and Maui�s dolphins are found
beachcast or incidentally caught in the inshore set-net gill fishery. Life history
parameters and cause of death have been reported for animals submitted for
autopsy between 1997 and 2001 (Duignan et al. 2003) and for the 2001/02
season (Duignan et al. 2004). This report includes similar data collected on
animals submitted during 2002/03.
The common dolphin (Delphinus delphis) is a pelagic, offshore species and has
a very wide distribution, occurring in all warm-temperate, subtropical, and
tropical waters worldwide (Leatherwood et al. 1983). In New Zealand, it is
frequently found in the coastal waters of both the North and South Islands
(Baker 1999). Group sizes vary seasonally and diurnally, but D. delphis are
regularly found in groups of several hundred, and sometimes of more than a
thousand, individuals (Leatherwood et al. 1983). The causes of mortality for
common dolphins include stranding (usually of single animals), entanglement,
and capture in direct-drive fisheries (Leatherwood et al. 1983).
The bottlenose dolphin (Tursiops truncatus) is known from warm and temper-
ate waters worldwide, is most common inshore, even entering rivers and estuar-
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7DOC Science Internal Series 195
ies, and is rarely seen in the open ocean. However, they have been reported up
to 800 km from the nearest land (Watson 1981). In New Zealand they are most
common in the Marlborough Sounds, Bay of Plenty, Hauraki Gulf and Northland
(Baker 1999). There is an isolated population resident in Doubtful Sound in
Fiordland and this appears to be the southern limit for this species in New Zea-
land. The bottlenose dolphin included in this report is the first submitted to
Massey University for autopsy with a history of net entanglement.
2. Materials and methods
2 . 1 M A T E R I A L S
A total of 17 dolphins were submitted for autopsy. Most of the dolphins were
shipped frozen and wrapped in plastic and woven nylon body bags. Two ani-
mals (H61/02 and H70/03) were submitted chilled, but unfrozen. In most cases
the carcass was tagged with a CSL or DOC tag and accompanied by a data sheet.
Animals untagged are indicated in Tables 1 and 2. The four common dolphins
included three males and one female. The catch co-ordinates were reported for
the male dolphins, but not for the female although the capture date and name of
the vessel (not shown) were included on the CSL data sheet provided (Table 1).
The bottlenose dolphin was found beachcast on the Coromandel Peninsula, but
came ashore entangled in fishing gear. The latter was sent directly to CSL for
analysis by the DOC personnel who found the carcass.
The four female Hector�s dolphins were all from the west coast South Island
population. All were found beachcast between August and November 2002
(Table 2). Of the five male Hector�s, four were from the east coast and one from
Westport. Two of the east coast animals were retrieved from nets. H62/02 was
caught in a gill net set for rig north of Potato Point, Blueskin Bay, Otago
(Table 2). The second (WB03-07Chh) was entangled in a set net off South Bay,
Kaikoura, in February 2003 (Table 2). The remaining animals were beachcast.
TABLE 1 . CAPTURE DATA FOR CETACEANS, 2002/03.
CODE PATHOLOGY CSL DATE LATI- LONGI- SEX
NO. NO. (d/m/y) TUDE TUDE
Common dolphin Delphinus delphis
WB03-02Dd 33982 NT 1 Oct 02 ND ND F
WB03-04Dd 34086 84 17 Oct 02 39° 53′S 173° 41′E M
WB03-17Dd 34705 1026 30 Apr 03 40° 21′S 170° 00′E M
WB03-18Dd 34712 1028 30 Apr 03 40° 21′S 170° 00′E M
Bottlenose dolphin Tursiops truncatus
WB03-40Tt 35153 NT 5 Sep 03 Beachcast (ND) M
NT = not tagged. ND = no data provided.
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8 Duignan & Jones�Autopsy of cetaceans, 2002/03
Two Hector�s dolphins were too decomposed to determine their gender. Both
were found beachcast on the west coast in May 2003 (Table 2).
Only one Maui�s dolphin was autopsied. It was a male animal and it was found
beachcast in June 2003 at O�Neils Beach on the Auckland west coast (Table 2).
TABLE 2 . CAPTURE/REPORTING DATA FOR BEACHCAST AND BYCAUGHT Cephalorhynchus sp . , 2002/03.
CODE PATHOLOGY DOC DATE CIRCUMSTANCES LOCATION
NO. TAG NO. (d/m/y)
Hector�s dolphin�Female
WB03-01Chh 33976 H58/02 07 Oct 02 Beachcast Barrytown Beach, Punakaiki
WB03-05Chh 34363 H60 25 Nov 02 Beachcast Westport
WB03-06Chh 34371 H56/02 14 Aug 02 Beachcast Pororari Beach Spit, Punakaiki
WB03-10Chh 34462 H59/02 10 Nov 02 Beachcast Farewell Spit, Golden Bay
Hector�s dolphin�Male
WB03-03Chh 34209 H61 17 Dec 02 Beachcast Timaru
WB03-07Chh 34399 07 Feb 03 Entangled in net South Bay Kaikoura, reef 40m offshore
WB03-08Chh 34400 11 Dec 02 Beachcast Kaikoura, 200m S of Otumatu Rock
WB03-11Chh 34463 H62/02 20 Dec 02 Bycatch Blueskin Bay, Otago, 45 42S, 170 38E
WB03-27Chh 34851 H63/02 22 Dec 02 Beachcast North Beach, Westport (near set-net)
Hector�s dolphin�Gender unknown
WB03-16Chh 34679 H69/03 04 May 03 Beachcast Blaketown Beach, Greymouth
WB03-28Chh 34854 H68/03 02 May 03 Beachcast North Beach, 2km south of Orowaiti River
Maui�s dolphin�Male
WB03-19Chm 34780 H70/03 04 Jun 03 Beachcast O�Neils Beach, West Coast, Auckland
2 . 2 M E T H O D S A N D N E C R O P S Y P R O T O C O L
2.2.1 Necropsy protocol
Pathological examination and sampling was conducted according to a standard
protocol adapted from published small cetacean necropsy protocols (Geraci &
Lounsbury 1993; Jefferson et al. 1994). The procedure included recording the
body weight (kg), external measurements (m), and examination of the carcass
for external lesions such as trauma, net marks, tissue loss, scars, etc. Carcasses
were placed with the left side down and an incision made through the blubber
from the cranial insertion of the dorsal fin to the ventral midline. Blubber depth
(mm) was measured dorsally, laterally and ventrally along this incision. Then
the carcass was carefully flensed and the subcutis examined for evidence of
trauma.
Lesions in the blubber and subcutis were sampled for histopathology by fixing
tissue in 10% buffered formalin. A blubber sample was taken, where appropriate
due to state of decomposition, and stored at �20°C for future fatty acid analysis.
The internal organs were examined systematically for lesions and tissues
sampled for histopathology, virology (only if fresh), parasitology, bacteriology
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9DOC Science Internal Series 195
(faeces routinely sampled but tissues only where appropriate), toxicology
(blubber), genetics (skin), and anatomical studies (skeleton or skull if requested
by Te Papa). The stomach was removed, tied off, and stored chilled until the
contents could be examined the same or following day. At least three of the
largest teeth from the middle of the dental arcade of the mandible were
extracted, washed and stored in 70% ethanol until they were prepared for age
determination. The reproductive organs were carefully dissected, measured
(mm), weighed (g), and stored in 10% buffered formalin. Any pathology found
was photographed.
2.2.2 Stomach contents
The full stomachs were weighed (kg), then opened with scissors and all
material washed into a 1 mm sieve. The stomach was then re-weighed to allow
the weight of the stomach contents to be determined. Large, relatively
undigested material was removed at this stage, and if possible an axial length
(mm) was measured for fish and squid. Smaller, more digested material was
gradually sorted using a black-bottomed tray. Otoliths were clearly visible
against this background, and as they are denser than most of the other material,
they sank to the bottom of the tray. Otoliths, squid beaks and other relevant
food material was also removed and stored in 70% ethanol. Parasites were
collected and preserved in 5% buffered formalin. Lesions in the gastric mucosa
were described, counted, and examples photographed.
2.2.3 Age determination
Age determination was based on a modification of a published protocol for
Hector�s dolphins (Slooten 1991). Briefly, the teeth were weighed (g) using a
Mettler PM 4800 Delta Range balance, and the length and greatest diameter
(mm) measured using Vernier callipers. The teeth were then washed in tap
water and decalcified for 24 hours in 5% nitric acid using at least 100 mL per
gram of tooth. After an overnight soak in water, the teeth were immersed in
formol formic acid for 24 hours and then washed overnight in running tap
water. The teeth were then soft enough to cut approximately one-third away
using a microtome blade. The cut surface was placed face down in a plastic
cassette and embedded in paraffin wax. The cassettes were processed by a
Citadel Tissue Processor (Shandon, UK) as for soft tissues. Sections were cut at
10�20 µm intervals using a microtome (Microtek Cut 4055F) and stainless steel
disposable microtome blades (S35 Feather Safe Razor Co. Medical Division,
Japan). Multiple sections were cut through each tooth and at least two teeth
were processed per animal. The sections were stained with toluene blue,
washed in water, dehydrated in absolute alcohol, cleaned in xylene, and
mounted on glass slides using rapid mounting medium. The tooth sections were
read independently by two observers at 16�80× magnification and the number
of dentinal growth layer groups (GLGs) assigned by consensus between the
readers.
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10 Duignan & Jones�Autopsy of cetaceans, 2002/03
2.2.4 Reproductive status
Females
Reproductive tracts were dissected out and examined grossly. The uterine
horns were opened and examined for signs of pregnancy. A sample of each horn
was removed, fixed in 10% buffered formalin, embedded in paraffin, sectioned
at 4 µm intervals, and stained with hematoxylin for microscopic examination as
per Lockyer & Smellie (1985) and Bacha & Wood (1990). The length and
diameter of the ovaries were measured (mm) using Vernier callipers, and the
ovaries weighed (g) using a Mettler PM 4800 Delta Range balance. The ovaries
were sliced at 2 mm intervals along their long axis with a scalpel. The slices
were examined for the presence of corpora lutea (CL) and corpora albicantia
(CA), both macroscopically and using a dissecting microscope at 10×
magnification. Sections were processed for microscopic examination as
described above. Sexual maturity was defined as the age at which a female had
ovulated at least once, and established by the presence of at least one corpus in
the ovaries (Harrison et al. 1972). The CAs were classified as per Marsh &
Kasuya (1984) and Slooten (1991).
Males
The length and midline diameter of the testes (excluding epididymis) were
measured (mm) using Vernier callipers and weighed (g) using a Mettler PM
4800 Delta Range balance. The epididymis was weighed (g) separately. Testes
were sectioned at 3 mm intervals using a scalpel and examined for evidence of
pathological changes. Histological samples taken from the centre of the testis
and epididymis, were embedded in paraffin wax, sectioned at 4 mm intervals,
mounted on glass slides and stained with haematoxylin and eosin. The sections
were then examined microscopically at 16�80× magnification to assess the
maturity of the seminiferous tubule epithelium and for the presence of
spermatozoa. Because the cell associations forming the epithelium vary
segmentally in mammalian testes, the predominant association in the section
was used to classify the stage of maturity. The gonads were classified as
immature, pubertal, mature-inactive, or mature-active (Collet & Saint Girons
1984; Slooten 1991).
Immature The seminiferous tubules/cords were narrow and often had no
apparent lumen. Sertoli cells and spermatogonia lined the tubules but no
further differentiation of germinal cells was apparent. There were abundant
interstitial cells. The duct of the epididymis was lined by simple cuboidal
epithelium and had a completely empty lumen.
Pubertal The seminiferous tubules were larger than for immature animals and
there was consequently less interstitial tissue. The epithelium of the tubules
contained spermatogonia, spermatocytes and occasional spermatids, but no
spermatozoa.
Mature-inactive The seminiferous tubules occupied most of the cross-
sectional area and had a defined lumen. The epithelium had sertoli cells,
spermatogonia, spermatocytes and early spermatids. Occasional tubule sections
may have contained late spermatids. The interstitial cells occupied very little
space between the seminiferous tubules. The ducts of the epididymis did not
contain spermatozoa.
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11DOC Science Internal Series 195
Mature-active The majority of tubule sections in the testis were lined by an
epithelium that has a sequence of differentiation from spermatogonia through
to spermatozoa. There was relatively little interstitial tissue present. The lumen
of the epididymis might be full of spermatozoa.
3. Results
3 . 1 M O R P H O M E T R I C S
An extensive set of standard measurements was taken where possible given the
state of decomposition of each carcass (Table 3).
3 . 2 S T O M A C H C O N T E N T S
The stomach weight and the weight of the contents were recorded for each
animal where possible (Table 4). The contents were not identifiable to species
for any animal but further work on materials collected will be conducted by
Kirsty Russell, Auckland University. Only four Hector�s dolphins had contents
in at least one stomach compartment. Most of these contents were indigestible
remains of teleost fish such as bones, eye lenses and otoliths, and an occasional
squid beak. Incidentally the two known bycatch Hector�s dolphins had the most
undigested remains. The dolphin caught in Blueskin Bay had an undigested fish
in its stomach while the dolphin caught in Kaikoura had fish bones as well as
otoliths. Two dolphins had no stomachs due to scavenging and decomposition.
The Maui�s dolphin had also eaten relatively recently and intact fish,
invertebrates, bones and otoliths were found in both the first and second
chambers of the stomach.
The male common dolphins had evidence of recent feeding with a range of food
items in the stomachs including intact fish, otoliths, bones and squid, squid
mantles, and squid beaks. The female dolphin had an empty stomach (Table 4).
The bottlenose dolphin had been entangled for some time and was severely
emaciated. The only material found in its stomach was plant debris.
3 . 3 A G E D E T E R M I N A T I O N
Data on tooth size and the number of dentinal growth layer groups (GLGs)
counted are given in Table 5. Because of technical problems with the sectioning
equipment the sections obtained from some teeth (asterisks on Table 5) were
not of high enough quality to determine the age with certainty. A second tooth
sample from each of these animals is being processed at the time of writing, and
the results will be included in an amended report. For the Hector�s dolphins
with teeth (n = 11) the mean tooth weight and size was similar to that reported
previously (Slooten 1991; Duignan et al. 2003). The teeth did not have obvious
incremental layers in the cementum, but there were clearly defined bands in the
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12 Duignan & Jones�Autopsy of cetaceans, 2002/03
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70
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0.1
90
.08
0.0
80
.21
0.3
60
.08
13
15
17
WB
03
-27
Ch
h3
48
51
28
1.1
90
.87
0.7
50
.60
.29
0.1
90
.07
0.1
0.2
30
.33
0.1
10
.75
18
12
16
Hec
tor�
s d
olp
hin
�G
end
er u
nkn
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n
WB
03
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Ch
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34
67
9�
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WB
03
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Ch
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34
85
1�
��
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Mau
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do
lph
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Mal
e
WB
03
-19
Ch
m3
47
80
38
.51
.32
0.9
40
.81
0.6
10
.32
0.2
30
.09
0.1
10
.24
0.4
20
.83
11
11
14
Co
mm
on
do
lph
in�
Fem
ale
WB
03
-02
Dd
33
98
21
00
.02
.15
1.5
51
.47
0.9
70
.48
0.3
30
.12
0.2
10
.38
0.1
60
.44
1.0
91
41
11
0
Co
mm
on
do
lph
in�
Mal
e
WB
03
-04
Dd
34
08
61
02
.02
.06
1.5
41
.37
0.9
30
.49
0.3
10
.12
0.2
0.3
30
.46
0.1
71
.08
12
13
12
WB
03
-17
Dd
34
70
57
6.0
1.7
91
.31
1.1
90
.93
0.4
70
.31
0.1
10
.18
0.2
60
.40
.15
0.9
51
51
11
5
WB
03
-18
Dd
34
71
28
8.0
21
.45
1.2
80
.25
0.9
0.2
80
.10
.19
0.2
90
.34
0.1
50
.95
15
91
1
Bo
ttle
no
se d
olp
hin
�M
ale
WB
03
-40
Tt
35
15
36
1.0
1.9
30
.77
0.5
0.3
20
.11
0.1
80
.24
0.4
11
.01
16
10
14
*A
dva
nce
d d
eco
mp
osi
tio
n.
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13DOC Science Internal Series 195
TA
BL
E 4
. S
TO
MA
CH
CO
NT
EN
TS
.
PA
TH
-ST
OM
AC
HC
OM
PA
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NT
1C
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PA
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NT
2C
OM
PA
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NT
3P
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SC
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NSI
TE
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NO
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T (
kg
)W
T (
kg
)W
T (
kg
)W
T (
kg
)W
T (
kg
)(Y
/N)
Hec
tor�
s d
olp
hin
WB
03
-01
Ch
h3
39
76
0.4
10
.39
0.0
21
sq
uid
bea
k,
too
dec
om
po
sed
to
ass
ess
anyt
hin
g e
lse
WB
03
-03
Ch
h3
42
09
WB
03
-05
Ch
h3
43
63
0.3
0.2
90
.01
NC
1
WB
03
-06
Ch
h3
43
71
0.8
10
.77
0.0
4N
C2
WB
03
-07
Ch
h3
43
99
0.5
20
.51
0.0
1fi
sh b
on
es,
squ
id b
eak
sY
C2
WB
03
-08
Ch
h3
44
00
0.3
0.2
80
.02
YC
2
WB
03
-10
Ch
h3
44
62
0.5
90
.57
0.0
2Y
�
WB
03
-11
Ch
h3
44
63
0.6
60
.51
0.0
51
wh
ole
fis
hY
C1
WB
03
-16
Ch
h*
34
67
9
WB
03
-27
Ch
h3
48
51
0.4
70
.45
0.0
2o
toli
ths
YC
2
WB
03
-28
Ch
h*
34
85
4
Mau
i�s
do
lph
in
WB
03
-19
Ch
m3
47
80
1.6
80
.63
0.9
63
fis
h,
1 i
nve
rteb
rate
, fi
sh0
.05
flu
id,
oto
lith
s, f
ish
0.0
02
flu
idN
No
bo
nes
, ey
ebal
ls,
oto
lith
sb
on
es
Co
mm
on
do
lph
in
WB
03
-02
Dd
33
98
20
.24
YC
1
WB
03
-04
Dd
34
08
62
.91
1.7
51
.15
6×
fish
, sq
uid
, fi
shad
ded
C1
ove
rflo
w f
rom
C1
No
ne
No
ne
YC
1
bo
nes
WB
03
-17
Dd
34
70
51
.69
0.8
40
.86
7sq
uid
+ b
eak
s, 2
fis
h +
oto
lith
sN
�
WB
03
-18
Dd
34
71
22
.83
1.5
11
.29
2 f
ish
, 7
squ
id m
antl
e, s
qu
id b
eak
s, o
toli
ths
NC
2
Bo
ttle
no
se d
olp
hin
WB
03
-40
Tt
35
15
30
.43
0.4
20
.01
Pla
nt
deb
ris
NC
1
*A
dva
nce
d d
eco
mp
osi
tio
n.
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14 Duignan & Jones�Autopsy of cetaceans, 2002/03
dentine of most animals. The accepted protocol for small cetaceans is that one
dark band (stained) and one light band (unstained) constitute one year�s growth
(Perrin & Myrick 1980; Slooten 1991). Based on this assumption, the Hector�s
dolphins ranged in age from one and a half years to 15 years old.
The common dolphins ranged from animals three or four years old to one male
that was eight years old. The bottlenose dolphin is one of the animals for which
a second tooth is being sectioned.
3 . 4 R E P R O D U C T I V E S T A T U S
Females
Morphometric data on reproductive tracts are given in Table 6. Hector�s
dolphin WB03-06Chh (H56/02) was badly decomposed with loss of much of the
genital area and mammary glands. The ovaries were present, however they were
inactive, without evidence of ovulation or corpora (Table 6). The reproductive
tract and mammary glands of WB03-10Chh (H59/02) were immature. These
findings are similar to those for female Hector�s dolphins, 6 years and younger,
reported by Slooten (1991) and also consistent with those of immature female
TABLE 5 . AGE ESTIMATION BASED ON DENTINAL GROWTH LAYER GROUPS (GLG)
FOR CETACEANS, 2002/03.
CODE PATH- CSLTOOTH
OLOGY CODE WEIGHT LENGTH WIDTH DEPTH GLGs
NO. (g) (mm) (mm) (mm)
Hector�s dolphin
WB03-01Chh 33976 H58/02 0.13 14 2.8 2.6 10
WB03-03Chh 34209 H61/02 0.06 7.8 1.8 1.7 1.5
WB03-05Chh 34363 H60/02 0.11 12.3 2.5 2.6 13
WB03-06Chh 34371 H56/02 0.11 9.3 3.1 2.7 15
WB03-07Chh 34399 0.12 12.7 2.5 2.6 9
WB03-08Chh 34400 0.12 12.6 2.7 2.7 5
WB03-10Chh 34462 H59/02 0.1 11.9 2.5 2.3 5
WB03-11Chh 34463 H62/02 0.09 12.4 2.6 2.5 1.5
WB03-16Chh 34679 H69/02 0.06 7.8 1.8 1.7 12
WB03-27Chh 34851 H63/02 0.1 12.2 2.8 2.9 3
WB03-28Chh 34854 H68/03 0.12 12 3.2 2.8 6*
Maui�s dolphin
WB03-19Chm 34780 H70/03 0.12 12.3 3 2.9 *
Common dolphin
WB03-02Dd 33982 0.15 13.7 3.6 3.2 4
WB03-04Dd 34086 84 0.16 14.4 3 3.6 *
WB03-17Dd 34705 1026 0.15 16.2 3.5 3.1 3 to 4*
WB03-18Dd 34712 1028 0.16 14.5 3.7 3 8
Bottlenose dolphin
WB03-40Tt 35153 0.6 21.7 7.3 7 *
* To be re-cut and read due to poor quality of tooth sections.
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15DOC Science Internal Series 195
dolphins, 5 years or younger, from previous bycatch reports (Duignan et al.
2003, 2004). The gonads of three dolphins (H58/02 and H60/02) had been
scavenged or decomposed and were not available for examination.
The common dolphin had a 13 mm corpus albicans in the left ovary but the
uterus was not well developed and milk was not present in the mammary
glands. This dolphin was estimated to be four years old and may be at the end of
puberty and showing the first evidence of ovarian activity.
Males
The gonads were examined for four male Hector�s dolphins and one Maui�s dol-
phin. Of these, one animal (WB03-07Chh) had testes with histological features
consistent with transition from puberty to maturity. The summed testicular
weight of 198 g is below the range previously found for fully mature combined
testicular mass (266 g�1210 g) as reported by Slooten (1991) and Duignan et al.
(2003), but similar to that of a mature-inactive male that had a combined testicu-
lar mass of 185 g (Duignan et al. 2003). Although the gradation between imma-
ture, pubertal and mature is probably indistinct, pubescent males would be ex-
pected to have an intermediate combined testicular mass. The remaining dol-
phins were definitely immature with summed testicular mass ranging from 21 g
to 30 g. In previous studies the combined testicular mass for the gonads of im-
mature dolphins ranged from 10.9 g to 29.6 g (Duignan et al. 2003, 2004).
Of the three male common dolphins, one (WB03-04Dd) was sexually mature
with active spermatogenesis and summed testicular mass of 1078 g. This
dolphin was also of mature body size at 2.06 m standard length. Active gonads
are consistent with its capture date in mid October as most reproductive
activity for this species occurs in spring and summer (Watson 1981;
Leatherwood et al. 1983). The two remaining dolphins were shorter in body
length and had markedly smaller testes at 56 g and 66 g summed mass
respectively. The gonads were mature but inactive and consistent with their
time of death in the autumn as both were caught on 30 April. The bottlenose
dolphin had an immature reproductive tract (Table 7).
TABLE 6 . FEMALE REPRODUCTIVE TRACT MORPHOMETRICS AND CHARACTERISTICS , 2002/03.
PATH-RIGHT OVARY LEFT OVARY
CODE OLOGY WT L×W×D CA CL WT L×W×D CA CL GRAVID MILK
NO. (g) (mm) (g) (mm) (Y/N) (Y/N)
Hector�s dolphin
WB03-01Chh 33976 � scavenged � � � � � � � �
WB03-05Chh 34363 � scavenged � � � � � � � �
WB03-06Chh 34371 1 27×12×7 1 27×12×10 N N
WB03-10Chh 34462 0.5 22×10×2 � � 0.7 25×10×4 � � N N
Common dolphin
WB03-02Dd 33982 2 30×14×14 � � 4.9 39×21×18 13 mm � N N
diameter
CA = Corpus albicans. CL = Corpus luteum.
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16 Duignan & Jones�Autopsy of cetaceans, 2002/03
TABLE 7 . MALE REPRODUCTIVE MORPHOMETRICS AND CHARACTERISTICS , 2002/03.
PATH-RIGHT TESTIS LEFT TESTIS
SUMMED
CODE OLOGY WT+EPID WT�EPID L×W×D WT+EPID WT�EPID L×DIAMETER TESTICULAR
NO. (g) (g) (mm) (g) (g) (mm) WT (g)
Hector�s dolphin
WB03-03Chh* 34209 � � � � � � �
WB03-07Chh 34399 94 74 129×28 104 89 106×30 198
WB03-08Chh 34400 13 9 70×19 17 12 81×19 30
WB03-11Chh 34463 8 6 49×12 9 7 56×13 17
WB03-27Chh 34851 11 7 53×15 10 7 54×14 21
Maui�s dolphin
WB03-19Chm 34780 52 39 105×30×21 52 38 99×32×27 104
Common dolphin
WB03-04Dd 34086 568.0 517.0 263×60 510.0 478.0 270×59 1078.0
WB03-17Dd 34705 29.0 22.0 85×19 27.0 20.0 85×22 56.0
WB03-18Dd 34712 34.1 19.1 103×22 32.2 28.7 105×21 66.3
Bottlenose dolphin
WB03-40Tt 35153 5 4 48×9 6 3 55×11 11
* Gonads decomposed.
3 . 5 P A T H O L O G Y
Entanglement-related pathology is included in Table 8. It should be noted that
freezing can compromise the interpretation of subtle pathological changes and
make the determination of cause of death difficult.
Of the four female Hector�s dolphins, only one (H59/02) showed clear evidence
of having died as a result of fishing operations. This animal had net marks on its
skin, subcutaneous trauma, and respiratory congestion and oedema
characteristic of asphyxiation. This animal had been found beachcast on
Farewell Spit. An incidental finding in this animal was lungworm infection. The
remaining females were either too autolysed to permit detection of possible
entanglement related pathology or had been badly scavenged. Thus, the
probability of their having been bycaught is unknown.
Five male Hector�s dolphins were examined. Two (H62/02 and WB03-07Chh)
were known to have died after entanglement in fishing gear and they had
epidermal and pulmonary pathology consistent with this. Both also had
evidence of blunt trauma. H63/02 had similar pathology although it was found
beachcast in Westport. Thus the probability of entanglement for this dolphin is
also high. WB03-08Chh and H61/02 are less likely to have died as a result of
fishing operations. Both had evidence of blunt trauma with the juvenile H61/02
having trauma to the head and neck that may have been the result of boat strike
or aggression from other dolphins, predator attack (killer whales), or trauma in
rough seas. WB03-08Chh had severe parasitic pneumonia that may have had a
role in its demise.
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17DOC Science Internal Series 195
The juvenile male Maui�s dolphin died from natural causes with severe fungal
pneumonia caused by Aspergillus fumigatus infection.
All of the common dolphins were known bycatch. Their pathology is consistent
with this in that all have epidermal net marks, evidence of acute blunt trauma,
and acute pulmonary and tracheal congestion, oedema, and haemorrhage.
WB03-18Dd also had a fractured flipper.
The bottlenose dolphin was found beachcast with fishing gear entangled
around its rostrum and embedded in the gingival at the commisures of the
mouth. The latter, along with drag caused by the mass of gear, prevented
feeding and this animal was severely emaciated. Its ultimate cause of death was
respiratory failure as indicated by markedly congested and oedematous lungs.
TABLE 8 . PATHOLOGY OF CETACEANS, 2002/03.
PATH- DOCENTANGLEMENT-RELATED PATHOLOGY
CODE OLOGY CODE GROSS ENTANGLEMENT
NO. PROBABILITY
Hector�s dolphin�Female
WB03-01Chh* 33976 H58/02 Too autolysed Unknown
WB03-05Chh* 34363 H60/02 Unknown
WB03-06Chh* 34371 H56/02 7 Unknown
WB03-10Chh 34462 H59/02 1,3,5 High
Hector�s dolphin�Male
WB03-03Chh* 34209 H61/02 3 Low
WB03-07Chh 34399 1,3,5 High
WB03-08Chh 34400 1,3 Low
WB03-11Chh 34463 H62/02 1,3,5 High
WB03-27Chh 34851 H63/02 1,3,5 High
Hector�s dolphin�Gender unknown
WB03-16Chh* 34679 Too autolysed Unknown
WB03-28Chh* 34854 Too autolysed Unknown
Maui�s dolphin�Male
WB03-19Chm 34780 H70/03 1,2,3 Low
Common dolphin�Female
WB03-02Dd 33982 5 High
Common dolphin�Male
WB03-04Dd 34086 84 1,3,5 High
WB03-17Dd 34705 1026 1,3,5 High
WB03-18Dd 34712 1028 1,3,5,7 High
Bottlenose dolphin
WB03-40Tt 35153 1,5 High
LEGEND
1 = Respiratory congestion
and oedema
2 = Pulmonary emphysema
3 = Trauma (contusion +/�
free blood in abdomen)
4 = Foreign matter in lungs
5 = External net
entanglement marks
6 = Regurgitated food in
oesophagus
7 = Bone fractures
* = Marked decomposition
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18 Duignan & Jones�Autopsy of cetaceans, 2002/03
4. Discussion
The dolphins examined for this contract were received frozen and double
bagged. In general the packaging was of a high standard and the animals were
identified by CSL observer or Independent Fisheries Ltd data sheets, or by
orange tags attached around the tail-stock. The orange tags around the tail-stock
of Hector�s dolphins were very effective for animal identification. It was
beneficial having a list of animals being shipped forwarded by e-mail to allow a
cross check between animals shipped and those received. In that way, any
animal that arrived without a CSL tag or stranding form could be traced. From a
health and safety perspective the packaging was sufficient to prevent
contamination of the environment by the carcasses provided they are
maintained frozen. Two carcasses were submitted chilled but not frozen. This is
ideal for pathology and is recommended for animals originating on the North
Island where shipping chilled carcasses should be possible logistically. A
second originated in Timaru, but was transported personally by Al Hutt to avoid
having it frozen and to facilitate a speedy diagnosis.
The life history characteristics of the common dolphin are similar to those
examined in previous CSL contracts (Duignan et al. 2003, 2004), and in
previous studies (Leatherwood et al. 1983). The three male dolphins had not
attained full adult length and only the largest appears to have attained gonadal
maturity. The female common dolphin was the largest of the four common
dolphins submitted and she had attained gonadal maturity at four years. The
common dolphins were all caught as a result of commercial fishing activities
and had cutaneous, soft tissue, and pulmonary lesions suggestive of blunt
trauma, entanglement and asphyxiation.
The Hector�s dolphins caught by commercial or recreational nets and those
found beachcast were from areas of the west and east coasts of the South Island,
areas which have a high Hector�s dolphin population (Slooten & Dawson 1994;
Slooten et al. 2002). A single Maui�s dolphin from the west coast of the North
Island where a relict population occurs (Ferreira & Roberts 2003), was also
submitted for necropsy. Morphological features of these animals were
consistent with those reported previously for Cephalorhynchus hectori
(Mörzer-Bruyns & Baker 1973; Slooten 1991; Slooten & Dawson 1994). The life
history data collected from these dolphins complements data from 12 animals
examined in 1999, 16 examined in 2000, and 18 in 2001, and 10 from 2002
(Duignan et al. 2003, 2004). The sex ratio of dolphins submitted was equal, as
compared to a bias in previous years with males comprising 62% of the animals
submitted in 2001, 56% in 2000, and 83% in 1999. This male bias over the
previous three years differs from a female bias reported by Slooten (1991).
Whether the bias represents a population bias or a sampling artefact is
unknown. There was also a bias towards younger and immature animals as in
previous studies based on bycatch and beachcast animals (Slooten 1991;
Dawson 1991; Duignan et al. 2003, 2004).
Determination of the species of fish and invertebrates ingested by the dolphins
was beyond the scope of this investigation, but all hard parts removed from the
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19DOC Science Internal Series 195
stomachs have been archived for future studies. As in previous years, the
stomach contents of Hector�s and Maui�s dolphins have been archived for Kirsty
Russell, Auckland University, for studies on foraging. Stomach contents of
Hector�s dolphins were similar to those examined by Duignan et al. (2003). The
remains predominately consisted of indigestible teleost fish bones and otoliths
and invertebrate carapaces. Fish predominated in the stomachs of Hector�s and
Maui�s dolphins, but fish and squid were equally represented in the stomach of
common dolphins. The bottlenose dolphin was so emaciated that there were no
recognizable food remains in its stomach.
The principle of age determination in cetaceans based on counting growth
layers or annuli in teeth is commonly used on a variety of species (Perrin &
Myrick 1980). Although widely used the technique is subject to difficulties in
methodology, interpretation, reader variability, variability among teeth, and the
lack of known age animals (Dapson 1980). The method used to section teeth
can also introduce marked biases into the interpretation of age. For consistency
with earlier studies this investigation employed a method previously used to age
Hector�s dolphins (Slooten 1991) that is based on paraffin embedding of
decalcified teeth followed by thin sectioning. It is a particularly difficult
method and inferior to methods used on other small cetaceans such as the
related Commerson�s dolphin (Lockyer et al. 1988). Consultation with Dr
Lockyer (Age Dynamics, Denmark) in August 2003, and future collaboration
with her in 2004, will probably see a revision of the methodology employed at
Massey especially in light of difficulties experienced with some teeth for this
study.
Entanglement in fishing gear may result in traumatic lesions immediately
apparent in the exterior of the carcass such as abrasions, amputations,
penetrating wounds and fracture of limb bones, mandibles or teeth (Kuiken
1994; Kuiken et al. 1994; Garcia Hartman et al. 1994). For cetaceans, diagnosis
of the aetiology is relatively simple because the sensitive hairless skin is easily
damaged and characteristic net marks are often left as impression marks around
the rostrum, melon and flippers or dorsal fin. Acute blunt trauma to the body
may result in contusions, haemorrhage, and skeletal fractures that are apparent
at necropsy. More specific are the cardio-pulmonary changes associated with
asphyxiation. These changes include diffuse pulmonary oedema, congestion,
emphysema, blood-stained froth in airways and pleural congestion. There may
also be congestion of pericardial vessels, ecchymotic haemorrhages on the
endocardium or epicardium; and on histology, hyper-contraction of myofibres
is seen along with fibre fragmentation and vacuolation (Lunt & Rose 1987).
Cutaneous lesions, characteristic of net marks, were observed on four Hector�s
dolphins, all of the common dolphins and the bottlenose dolphin. Three
Hector�s dolphins were too decomposed to definitely determine any skin
pathology and two appeared not to have net impressions on the skin. However,
net marks are not always evident on dolphins known to have been entangled
and there should be some caution in the interpretation of this finding (Duignan
et al. 2003).
Acute pulmonary lesions indicative of asphyxiation were present in both
Hector�s dolphins and in the bottlenose and common dolphins known to have
died as a result of capture in fishing gear. These lesions took the form of acute
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20 Duignan & Jones�Autopsy of cetaceans, 2002/03
diffuse congestion and oedema of the lungs, congestion and haemorrhage in the
airways, and blood-stained froth in the airways. These animals also appeared to
have acute subendocardial cardiomyopathy (hyper-contraction and fibre
fragmentation) of the thickest part of the left ventricular wall consistent with
coagulative myocytolysis or coagulative necrosis. Both lesions are
morphologically similar particularly in the peracute to acute stage of lesion
development. Generally cardiac lesions take hours to develop to a stage where
necrosis is unequivocal. In humans with myocardial infarction, necrosis is not
seen for up to twelve hours post infarction (Kumar et al. 1992). However
ultrastructural changes as determined by electron microscopy can be seen after
two hours. Electron microscopy cannot be carried out on pre-frozen tissue.
Thus too little time may elapse between the onset of a lesion in the dolphin
myocardium and the death of the animal. Freezing may also induce changes that
can be confused with true lesions. This problem can only be addressed by
conducting necropsies on fresh unfrozen dolphins as soon as possible after
death by entanglement.
Of the nine Hector�s dolphins that were beachcast, two (22%) have a high
probability, based on observed lesions, of having died as a result of
entanglement in fishing gear. One juvenile animal appears to have died
suddenly from blunt trauma, but the origin of that trauma could not be
determined. Two others had severe parasitic pneumonia and that may have
played a role in their death. The remaining four animals were too decomposed
to determine cause of death. The Maui�s dolphin died as a result of severe
pulmonary infection by the opportunistic terrestrial fungus, Aspergillus
fumigatus. In this case the fungus invaded the pulmonary artery from the lung
and caused intra thoracic haemorrhage that caused death. Aspergillosis is
extremely rare in dolphins worldwide, but has been reported in striped
dolphins, Stenella coeruleoalba, and bottlenose dolphins debilitated by
morbillivirus infection (Domingo et al. 1992; Lipscomb et al. 1994). A previous
case was reported for a juvenile male Hector�s dolphin with fulminating
pulmonary and cerebral aspergillosis (Duignan et al. 2003). In neither case was
morbillivirus implicated based on virus isolation and immunohistochemical
staining of tissues for morbillivirus antigen (Duignan et al. manuscript in
preparation). However, the underlying cause for immunosuppression in
Hector�s and Maui�s dolphins remains unresolved.
5. Acknowledgements
Carcasses were submitted by government observers (Ministry of Fisheries), Jim
Lilley (Marine Watch), and DOC staff: J. Fyfe, A. Hutt, M. Morrissey, K. McLeod,
S. Mowbray, D. Neale, H. Stoffregen, and C. Wood. Assistance with necropsies,
sorting and identifying stomach was provided on occasion by A. Castinel, F.
Sapriza, and M. Stratton. Pat Davey assisted with tooth sectioning and prepared
histological slides. Our thanks to the following: L. Rogers for bacteriology, B.
Adlington for parasitology, D. Knight for virology, Dr Christina Lockyer, Age
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21DOC Science Internal Series 195
Dynamic, Denmark, for consultation on age determination. Wendy Graham
provided secretarial assistance. We acknowledge the goodwill of the
Department of Pathobiology and the Institute of Veterinary Animal and
Biomedical Sciences in provision of facilities, storage space, use of the chiller,
space for freezers. M. Hogan is particularly helpful in assisting with carcasses
and waste disposal. The research described in these reports was funded by DOC
(Science Investigation nos 96/3040 and 99/3025).
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