basic investigation of outbreaks karin galil, md mph centers for disease control and prevention...
TRANSCRIPT
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Basic Investigation of Outbreaks
Karin Galil, MD MPHCenters for Disease Control and Prevention
Atlanta, Georgia
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Outline
Identify the outbreak Investigate the outbreak Interpret results Institute control measures Report results
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Identify Potential Outbreaks
What is an outbreak ?
How can one detect outbreaks ?
Why should one look for outbreaks ?
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Outbreak: Definition
An increase in the occurrence of a complication or disease above the background rate
One rare event e.g. GAS surgical site infection
Many episodes of common occurrence e.g. MRSA surgical site infections
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Background Rate of Disease
Ongoing surveillance Determine rates—compare within and
between institutions Trends Requires common, accepted case
definitions
Retrospective review of data
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Pitfalls in Rate Estimates Case definitions
Numerator Different definition increased or
decreased number
Population at risk Denominator Different definition increased or
decreased rate
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Who Identifies Potential Outbreaks ?
Routine surveillance Infection control Registries
Clinical staff
Laboratory staff
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Reasons to Investigate
Outbreak control
Increased knowledge Pathogen Risk factors for acquisition Transmission Epidemiology
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Clusters that Suggest Nosocomial Transmission
Similar cases on one unit or among similar patients
Cases associated with invasive device HCW and patients with same infection Typical nosocomial pathogen
multiply-resistant opportunistic
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Determining Risk Factors for Disease
Known risk factors in hospital-acquired infections: Invasive devices Severe illness or underlying disease
Environmental factors Especially immunocompromised patients
(e.g. aspergillosis)
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Institute Control Measures
Immediate control measures needed even before investigation begun or completed
Simple: e.g. improved handwashing
Complex: cohorting patients, closing unit, halting use of device or product
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Before the Investigation
Cooperation All involved personnel and administration
Laboratory capacity Antimicrobial susceptibility testing, typing
(molecular and nonmolecular methods) Resources
Personnel, supplies, lead investigator, statistician
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The Investigation
Define “case” Find cases Confirm outbreak Review charts Describe epidemiology Generate hypothesis Test hypothesis Analyze data Communicate results
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Case Definitions
“Working” case definition Person, place, time Clinical, laboratory or diagnostic findings Confirmed vs. possible cases
Case definitions usually change during the investigation
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Example: Case Definition
“A case of multi-drug resistant tuberculosis was defined as any patient in Hospital X diagnosed with active tuberculosis from January 1, 1999
to December 31, 1999 whose isolate was resistant to at least isoniazid and rifampin.”
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Case Finding
Use case definition to find other cases in the source population Large potential source population: discharge
diagnoses, microbiology log books, emergency room visits, use of diagnostic technique
Small population (unit of hospital): review charts of entire cohort
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Line Listing
Name Age Sex Ward Onset Outcome
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Confirm the Outbreak
Calculate background rate of disease
Compare rate during outbreak with background rate
Define periods from incubation timeto last case (or present)
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Rate Ratio=
attack rate (outbreak period)attack rate (background period)
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Pseudo-Outbreaks
Clusters of positive cultures in patients without evidence of disease
Perceived increase in infections New or enhanced surveillance Different laboratory methods
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Descriptive Epidemiology
Line listing of case-patients (person, place, time) Demographic information Clinical information
Epidemic curve Point source Person-to-person
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Point Source Outbreak
Shorter duration
Sharp peak in epidemic curve
Rapid resolution May resolve without intervention
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Epidemic Curve:Point Source Outbreak
0
5
10
15
20
25
30
35
Day 1 Day 2 Day 3 Day 4 Day 5
Day of Onset
No.
of
case
s
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Epidemic Curve:Contaminated Product
0
5
10
15
20
25
30
Nu
mb
er o
f p
erso
ns
wit
h a
bsc
ess
1995 1996
N=87
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Bloodstream Infections and Pyrogenic ReactionsExtrinsic Contamination
0
1
2
3
4
29-J
un
06-J
ul
13-J
ul
20-J
ul
27-J
ul
03-A
ug
10-A
ug
Nu
mb
er o
f C
ases
Bloodstream infection Pyrogenic reaction
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Person-to-Person or Contaminated Equipment
Poor infection control technique or contaminated patient equipment
Long duration May not resolve without intervention
If HCW and patients affected, plot separately and together to determine mode of transmission
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Clues
Location Tb skin test conversion associated with
outpatient HIV clinicair flow
Patient characteristics Immunocompromised patients Persons of a certain age Persons with same disease/procedure
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Hypotheses
What caused the outbreak ? Available data from the outbreak Published literature Expert opinion
Hypothesis testing
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Epidemiologic Studies
Case-control studies Cases : disease Controls : equal likelihood of
exposure as cases
Cohort studies Cohort selected on the basis of
exposure status
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Case-Control Study
Advantages: small number of cases, better for rare diseases, diseases with long latency periods, multiple exposures
Disadvantages: selection and recall bias, not good if exposure is rare, cannot measure disease incidence rate (OR vs. RR)
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Cohort Study
Advantages: can study rare exposures, can calculate disease incidence rates, selection bias less likely
Disadvantages: feasibility, not suited to rare diseases
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Collect Data
Complete: same data for cases and controls
Unbiased: same way to avoid bias
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Potential Types of Bias
Selection bias Self-selection Diagnostic bias
Information bias Differential vs. misclassification Recall bias
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Questionnaire
Design questionnaire Demographic information Potential risk factors Outcomes
Field test
Complete for on all patients
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Enter and Clean Data
Line listing
Statistical program EpiInfo, SAS, STATA
Clean data Correct errors
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Data Analysis
Descriptive statistics
Univariate analysis
Stratified analysis
Complex analysis
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Descriptive Statistics
Vital first step Describe person, place, time Describe frequency of all
variables collected Look for errors Decide on further analyses
based on these results
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.
a b a+b
c d c+d
a+c b+d N
Exp
osu
re Yes
No
Disease
Yes No
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Risk Estimate
OR/RR >> 1 Strong positive association
OR/RR = 1 No association
OR/RR << 1 Strong negative association
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Statistical Significance
Confidence Intervals Include 1 Exclude 1
P value p > 0.05 p << 0.05
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Univariate Analysis:Categorical Variables
Categorical variables (yes/no; young/old)
Odds Ratio (OR) case-control study
Relative Risk (RR) cohort study
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Odds Ratio
Case-control study
OR = odds that person with disease was exposed compared to odds that a person without disease was not exposed to risk factor
OR estimates the relative risk
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Odds Ratio
OR = ad / bc
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Odds Ratio
Disease No disease
Exposure 14 7 21
No exposure
5 8 13
19 15 34
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Calculating the Odds Ratio
OR = ad / bc
OR = (14)(8) / (7)(5)OR = 3.2
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Relative Risk
Cohort study
RR = risk ratio = incidence rate ratio = relative rate
RR = risk of disease among exposed compared to risk among the unexposed
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Relative Risk
RR = a(c+d) / c(a+b)
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Confidence Intervals
Sampling estimates the OR or RR
95% confidence Intervals—if we resampled numerous times, our estimate would fall within these bounds 95% of the time
Finite population correction
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Statistical Tests for 2x2 Tables
Chi-square test
Fisher’s exact test—if value of any cell <5
P value indicates level of certainty that association was not due to chance alone
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Risk Estimate vs. P Value
OR or RR –direction & strength of association >>1: strong association = 1 : no association <<1: strong inverse association
P Value—level of certainty about the estimate of the association <<.05: unlikely to be due to chance
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Univariate Analysis: Continuous Variables
Continuous variables (e.g. age, bp) Distribution
Normal (bell-shaped)• Mean and standard deviation
Not normal• Median and range
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Stratified Analysis
Simple stratified analysis Control for one variable
Logistic/linear regression models Control for multiple variables at once Control for confounding and effect
modification Non-linear relationships
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Microbiologic Investigation
Alert lab: save all specimens + positive cultures
Typing of organisms Species identification Biotyping Antimicrobial susceptibility testing Advanced typing (serotyping, plasmid analysis,
phage typing, isoenzyme electrophoresis, genetic fingerprinting)
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Environmental Investigation
Are inanimate objects linked with the outbreak ?
Were infections clustered in one area ?
Consider infected devices, medications/products, airflow patterns
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Interpret Results
Is there an association ? It is statistically significant ? Was study biased ? Are the results plausible ? Did the exposure precede the outcome ? Are results consistent with other studies ? Is there a dose-response effect ?
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Control the Outbreak
Routine infection control procedures Guidelines for universal precautions Specific guidelines for patient-care equipment
Specific interventions for the ongoing outbreak Clues—person, place, time
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Evaluate Control Measures Did the control measures stop the outbreak?
Were there multiple modes of transmission ?
Were control measures implemented properly ?
Were control measures sufficient ?
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Implement Successful Control Measures
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Report Results
Inform all concerned parties of results Hospital staff, consultants, health department
Contaminated products/devices—government authorities, manufacturers
Media — spokesperson
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Investigations are:
ChallengingTime - consumingImperfect