bold imaging
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BOLD Imaging. An Introduction to MRI Physics and Analysis Michael Jay Schillaci, PhD Monday, February 25, 2008. Overview. Neurophysiology The brain’s vascular system Neurons, dendrites and pumps Energy in the brain BOLD Imaging Source of BOLD Signal The Hemodynamic response - PowerPoint PPT PresentationTRANSCRIPT
BOLD Imaging
An Introduction to MRI Physics and Analysis
Michael Jay Schillaci, PhDMonday, February 25, 2008
Overview Neurophysiology
The brain’s vascular system Neurons, dendrites and pumpsEnergy in the brain
BOLD Imaging Source of BOLD SignalThe Hemodynamic responseBOLD Artifacts
Neurophysiology
Duvernoy, H. M., Delon, S., & Vannson, J. L. (1981). Cortical blood vessels of the human brain. Brain Research Bulletin,
7(5), 519-579.
Arteries (1-25mm)Arterioles (10 - 300 microns)precapillary sphinctersCapillaries (5-10 microns)Venules (8-50 microns)Veins
(anastomosis of internal carotids and basilar
artery)
ACA – Medial cortex
MCA – Anterolateral cortex
PCA – Posterior temporal and occipital lobes
Sinus. n. An separation of the dura mater in
which blood drains into the venous system.
Distribution of vascularization - occurs across cortical layers
Capillary structure
Oxygen (via
hemoglobin)
Glucose
Facts about energy supply to brain
30-50 μmol/g/min of ATP for awake brain
10 μmol/g/min of ATP for comatose brain
Information processing accounts for >75% of ATP consumption
54mL/min of blood for each 100 g of brain tissue
Brain is ~3% of body weight, but demands 15-20% of blood flow and ~20% of blood oxygen
There are two primary types of information flow in the CNS:
1) Signaling via action potentials (axonal activity) and
2) Integration via dendritic activity
Action potential
Depolarization opens CA2+ channels
Vesicles fuse with presynaptic membrane
Neurotransmitter release
Neurotransmitters open ion channels on postsynaptic membrane
Change in potential
IPSP or EPSP
Energy Demands of Integration/SignalingFollowing activity, neurons require energy to restore concentration gradients of key
ions.Sodium-Potassium
pump takes sodium out of the cell while
bringing potassium into the cell.
Note that for action potentials, the
movement of ions is along gradients.
Key concept: activity of neurons does not itself require energy; restoring membrane potentials afterward does.
BOLD Imaging
BOLD - Endogenous Contrast Blood Oxyenation Level Dependent Contrast
dHb is paramagnetic, Hb is less Susceptibility of blood increases linearly with oxygenation BOLD subject to T2* criteria
Oxygen is extracted from capillaries Arteries are fully oxygenated Venous blood has increased proportion of dHb Difference between Hb and dHb states is greater for veins Therefore BOLD is result of venous blood changes
Sources of the BOLD Signal
Neuronal activity Metabolism
Blood flow
Blood volume
[dHb]BOLDsignal
BOLD is a very indirect measure of activity…
Facts about blood flow Aorta peak flow: 90 cm/s Internal carotid flow: ~ 40 cm/s Smaller arteries: ~10-250 mm/s Capillaries: ~ 1 mm/s Venules and small veins: ~10-250 mm/s
Change in arteriole dilation as a function of distance from active neurons
Iadecola, Nature Reviews Neuroscience, 2004
How does the vascular system respond to neuronal activity?
Iadecola, Nature Reviews Neuroscience, 2004
Physiological data suggests that blood flow
changes may be associated with
preponderance of dendritic activity, but
disconnections are possible.
Neuronal Origins of BOLD
Adapted from Logothetis et al. (2002)
BOLD response predicted by dendritic activity (LFPs)
Increased neuronal activity results in increased MR (T2*) signal
LFP=Local Field Potential; MUA=Multi-Unit Activity; SDF=Spike-Density Function
BASELINE ACTIVE
Hemoglobin and Magnetism The Hemoglobin (Hb) Molecule
An organic molecule containing four heme groups (with iron in each) and globular protein (globin).
Oxygen Characteristics Oxygen bound - oxyhemoglobin (Hb) No oxygen bound - deoxyhemoglobin (dHb)
Magnetic Properties Hb is diamagnetic - no dipole dHb is paramagnetic - slight dipole
Oxygen and Field Strength Apply magnetic field to brain Blood oxygen level differs
dHb is paramagneticLocal field increased
Hb diamagneticLocal field decreased
Blamire et al., 1992This was the first event-related fMRI study. It used both blocks and pulses of visual stimulation.
Hemodynamic response to long stimulus durations.
Hemodynamic response to short stimulus durations.
Gray Matter
White matter
Outside Head
fMRI and Contrast Endogenous Mechanism
Blood deoxygenation affects T2 Recovery
Increasing Blood Oxygenation Level
Dec
reas
ing
Re
laxa
tion
Tim
e
T2
T1
Basic Form of Hemodynamic Response
Initial Dip (Hypo-oxic Phase)
Transient increase in oxygen consumption, before change in blood flow Menon et al., 1995; Hu, et al., 1997
Shown by optical imaging studies Malonek & Grinvald, 1996
Smaller amplitude than main BOLD signal 10% of peak amplitude (e.g., 0.1% signal change)
Potentially more spatially specific Oxygen utilization may be more closely associated with neuronal activity than perfusion
response
Early Evidence for the Initial Dip
CA B
Menon et al, 1995
Why is the initial dip controversial?
Not seen in most studies Spatially localized to Minnesota May require high field
Increasing field strength increases proportion of signal drawn from small vessels
Of small amplitude/SNR; may require more signal Yacoub and Hu (1999) reported at 1.5T
May be obscured with large voxels or ROI analyses May be selective for particular cortical regions
Yacoub et al., 2001, report visual and motor activity Mechanism unknown
Probably represents increase in activity in advance of flow But could result from flow decrease or volume increase
Yacoub et al., 2001
Negative BOLD response caused by impaired oxygen supply
Subject: 74y male with transient ischemic attack (6m prior) Revealed to have arterial
occlusion in left hemisphere
Tested in bimanual motor task
Found negative bold in LH, earlier than positive in right
Rother, et al., 2002
The Hemodynamic Response Lags Neural Activity
Experimental Design
Convolving HDR
Time-shifted Epochs
Introduction of Gaps
The fMRI Linear Transform
Boynton et al., 1996
Varied contrast of checkerboard bars as well as their interval (B) and duration (C).
Boynton, et al, 1996
Refractory Periods
Definition: a change in the responsiveness to an event based upon the presence or absence of a similar preceding eventNeuronal refractory periodVascular refractory period
Dale & Buckner, 1997
Responses to consecutive presentations of a stimulus add in a “roughly linear” fashion
Subtle departures from linearity are evident
Intra-Pair Interval (IPI)
Inter-Trial Interval(16-20 seconds)
6 sec IPI
4 sec IPI
2 sec IPI
1 sec IPI
Single-Stimulus
Huettel & McCarthy, 2000
500 ms duration
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Hemodynamic Responses to Closely Spaced Stimuli
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“Rough Linearity”
Time since onset of second stimulus (sec)
Sig
nal C
hang
e ov
er B
asel
ine(
%)
T2*: fMRI Signal is an Artifact
BOLD artifacts fMRI is a T2* image – we will have all the artifacts that a
spin-echo sequence attempts to remove. Dephasing near air-tissue boundaries (e.g., sinuses)
results in signal dropout.
BOLDNon-BOLD
Neuro-Vascular coupling