c 3 - bioinformatics support for harvard researchers reddy gali
TRANSCRIPT
C3- Bioinformatics Support for Harvard Researchers
Reddy Gali
What kind of support
• Education
• Support / Consulting
• Outreach
• Informatics
• Collaboration
Education - Workshops• Introduction to Microarrays and affymetrix data
analysis• Metacore Pathway Analysis• Metadrug – Compound based pathway analysis• Transcription Factor Analysis using ExPlain,
TransFac and Transpro• Biobase- Biological Knowledge Library• Ingenuity Pathway Analysis• Sequence Alignment – BLAST & Clustal• Genome Browsing• Introduction to R/Bioconductor • ENSEMBL• Fundamentals in Matlab
Education –Workshops
• Illumina gene expression array analysis using Bioconductor/R
• Two Channel / cDNA gene expression analysis
• Integrative Genomics Viewer - Exploration of large integrated sequence and genomic datasets
• cDNA microarray analysis• Perl and BioPerl for Biologists• Biomedical Imaging Analysis• Expression analysis using GenePattern• MicroRNAs Analysis• Illumina Microarray data analysis
Education - Signup
Education - Signup
Education - Signup
Collaboration - Workshops
• Josiah Altschuler– DFCI• Deepti Anand – Joslin• Amir Karger – FAS -RC• Steven Finch – FAS-Statistics• Helga Thorvaldsdottir - MIT• Ravi Gutti – Children’s• Raymond Didanato - Biobase• Michael Reich – Broad MIT• Galina Gabriel– Children’s
Collaboration - Workshops
• Anosha Siripala - Genego• Nipun Patel – MGH• Aedin Culhane – DFCI• Reddy Gali – CBMI/Countway• David Osterbur – CBMI/Countway• Paul Bain – CBMI/Countway
• Lellean JeBailey – Genego
Collaboration - Projects
• Research Projects – Gene Expression– High fat diet in Pigs - BIDMC– Cord and Peripheral blood cells in Humans-
Children’s– mRNA house keeping genes– Children’s
Support / Consulting
•HMS •HSDM•BWH •BIDMC•CH•Joslin •FAS •MGH •CBMI •HSPH
Outreach
Harvard Catalyst Site
Harvard Catalyst e-mail
Word of Mouth / Flyers
ABCD e-mail lists
November 2009 – June 2010
55 bioinformatics workshops ~ 1000 attendees
110 consulting sessions – 50 distinct users
99 RT tickets since February
C3 Bioinformatics Flyer
Thank you