centre for genetic resources, the netherlands workpackage 1: documentation rob van treuren eu leafy...
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Centre for Genetic Resources, the Netherlands
Workpackage 1: Documentation
Rob van Treuren
EU Leafy VegAnnual meetingAlnarp, Nov. 2008
Centre for Genetic Resources, the Netherlands
WP1: Outline of the meeting
Progress 2008 and status overview Wednesday morning
Wrap up based on partner contributions Thursday afternoon
Centre for Genetic Resources, the Netherlands
WP1: Objectives
Crop databases Update of the ILDB DB development for spinach, chicory and minor
crops
Selection of material to be used in other WPs
Linkage of data from other WPs to databases
Organization of a safety duplication system
Identification of gaps within the collections
Centre for Genetic Resources, the Netherlands
WP1: Workplan
Collection of passport data Consortium, other European and non-European
collections Selection of material for use in other WPs
Regeneration, characterization, evaluation Incorporation of new data in DB’s
Characterization and evaluation data Design of safety duplication system
Design of system and implementation Identification of collection gaps
Analysis of new databases
Centre for Genetic Resources, the Netherlands
WP1: Duration and coordination
Duration Month 1-48
WP-leader CGN
Task-leaders CGN (lettuce and spinach) GEVES (chicory) IPK (minor crops)
Centre for Genetic Resources, the Netherlands
WP1: Activities 2008
Databases Lettuce and spinach
• Non-European collections approached for passport data
Chicory• Format/lay-out changed according to ECPGR standards• CGN hosting the new database
Databases on-line and publicly available• http://documents.plant.wur.nl/cgn/pgr/LVintro/
Webpage structure for download section developed Safety duplication
Realized safety duplication• INRA ---> WHRI (28%)• Arche Noah ---> AGES, Linz• KIS ---> CZ (?)
Centre for Genetic Resources, the Netherlands
WP1: Material included in the
databases Lettuce 11554 accessions (30 collections)
Spinach 2017 accessions (25 collections)
Chicory 1180 accessions (9 collections)
Minor leafy vegetables 183 accessions (3 collections)
Centre for Genetic Resources, the Netherlands
WP1: Webpage structure for data downloads
(lettuce)
Centre for Genetic Resources, the Netherlands
WP1: Presentation of downloadable
files
Data files so far available Characterization: 5 (IPK & CGN) + 2 (incomplete) Evaluation: 0 Utilization: 0
Centre for Genetic Resources, the Netherlands
WP1: Procedure for providing project
data Partners Enter the data in the applicable format file
available from the project website Send data to their WP-leader
• Characterization: IPK (Stefanie Thumm)• Evaluation: GEVES (Pascal Coquin)• Utilization & marketing: WHRI (Dave Pink)
WP-leaders Final check and forwarding to CGN
CGN Make the data on-line available as
downloadable files
Centre for Genetic Resources, the Netherlands
WP1: Workplan safety duplication
Inventory current status for each partner
Identification of bottlenecks
Identification of suitable hosts
Safety duplication of at least
the material involved in the project
Centre for Genetic Resources, the Netherlands
WP1: Status overview safety
duplication
Centre for Genetic Resources, the Netherlands
WP1: Deliverables
Deliverable
Month
Description Status
D01 30 Passport data of the four leafy vegetable (LV) collections donated
Ongoing
D02 48 Databases of the four crop groups developed and on the Internet
Ongoing
D03 48 Evaluation and characterization results in fixed formats linked to the databases
Ongoing
D04 48 Safety duplication system of the LV collections established
Not yet due
D05 48 Gaps in the four LV crop collection groups identified
Not yet due
Centre for Genetic Resources, the Netherlands
WP1: Milestones 2007
Milestone Month
Description Status
M01 3 Start made selecting material used for the evaluation activities
Completed
M02 3 Start made requesting passport data for the four crop groups
Completed
M03 6 Material selected for regeneration and characterization of the four crop groups
Completed
M04 12 Material selected for the evaluation activities of the four crop groups
Completed
M05 12 Inventory of system of safety duplication of the collections made and discussed during the second project meeting
Completed
Centre for Genetic Resources, the Netherlands
WP1: Milestones 2008-2010
Milestone Month Description Status
M06 24 Passport data of most collections of the four databases delivered
Ongoing
M07 36 Databases with passport data for the four crop groups nearly finalized
Ongoing
M08 36 Part characterisation and evaluation data donated and start made including these in the databases
Ongoing
M09 36 Safety duplication of part of the collections realized
Ongoing
M10 36 Start made identifying gaps in the collections Not yet due
M11 42 Start made with making the databases available via the Internet
Completed
M12 42 Safety duplication of collections inside the project realized
Ongoing
M13 45 Most characterisation and evaluation data donated for inclusion in the databases
Not yet due
Centre for Genetic Resources, the Netherlands
WP1: Status summary
WP1 is still on schedule Points of attention
Increase of content chicory database• Uptake of more collections
Increase of content minor LV database• Uptake of more collections (lamb's lettuce and Rucola)• Other minor LVs (asparagus, artichoke and Rheum)
Uptake of non-European collections in databases? Project data: delivery by project partners Uptake of accession pictures or links to institutional
databases? Safety duplication: status reports and realization by
partners