chapter 12: lipids and cell membranes copyright © 2007 by w. h. freeman and company berg tymoczko...

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Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg • Tymoczko • Stryer Biochemistry Sixth Edition

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Page 1: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Chapter 12:Lipids and Cell Membranes

Copyright © 2007 by W. H. Freeman and Company

Berg • Tymoczko • Stryer

BiochemistrySixth Edition

Page 2: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Lipids

• Classified by solubility, not structure.

• Lipids are any molecules that can be extracted from cells using nonpolar organic solvents.

• Lipids are non-polar molecules and are not water soluble although some are amphipathic.

Page 3: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Lipid Classes

Triglycerides (triacylglycerols)

Glycerol based phospholipids

Sphingosine derivatives: sphingomyelins and gangliosides

Steroids/sterols: cholesterol (C27), bile acids (C24), adrenocortical hormones (C21), and sex hormones (C19 & C18)

Eicosinoids: prostaglandins, thromboxanes, leucotrienes and prostacyclins

Fat-soluble vitamins (pg 424)

Page 4: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Triacylglycerol (triglyceride)

Triglyceride (as shown below) is derived from glycerol plus one molecule each of palmitic acid, oleic acid, and stearic acid, the three most abundant fatty acids.

CH2OC(CH2)14CH3

CH2OC(CH2)16CH3

CH3(CH2)7CH=CH(CH2)7COCH

O

O

O

oleate (18:1)

stearate (18:0)

palmitate (16:0)

A very non-polar molecule (storage fat)

Page 5: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Triacylglycerol

• Physical properties of triglycerides depend on the fatty acid components.– the melting point increases as the number of

carbons in the hydrocarbon chain increases and as the number of double bonds decrease.

– triglycerides rich in unsaturated (cis double bonds) fatty acids are generally liquid at room temperature and are called oilsoils.

– triglycerides rich in saturated fatty acids are generally semisolids or solids at room temperature and are called fatsfats.

Page 6: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Fatty AcidsNaturally occuring components of triacylglycerols and phospholipids

Page 7: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Naming Fatty Acids

omega end () carboxyl end (1)

Page 8: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition
Page 9: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Table of Fatty Acids

Page 10: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Phospholipids

• Phospholipids are the second most abundant group of naturally occuring lipids.– they are found almost exclusively in plant and

animal membranes. Membranes vary in the lipid vs protein content depending upon function.

– the most abundant phospholipids are derived from phosphatidic acid, a molecule in which glycerol is esterified with two molecules of fatty acid and one of phosphoric acid.

– a second class of phospholipids are the sphingomyelins derived from N-acylsphingosine (ceramide) and a phosphate.

Page 11: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Phosphatidic Acid

Glycerol residue

phosphate

Page 12: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Glycerophospholipid cartoon

Head-polar

Tail – nonpolar

An amphipathic structure

Page 13: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Head Pieces

Page 14: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Glycerophospholipids

Page 15: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Sphingophospholipids

PalmitoylSCoA + Serine Sphingosine

Trans db

Trans db

Page 16: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Ceramide phosphate

CH

CH

CH2-O-P-O-

OH

N

O

from serine

from palmitic acid

stearic acid O

O-

• N-acylsphingosine-P (ceramide phosphate)

– the N-acyl fatty acid is usually unsaturated. – the alcohol normally attached to the phosphate is

choline.

Trans db

Page 17: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Glycolipids (no phosphate)

(Ceramide + glucose or galactose)

Page 18: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Glycolipids

A complexcarbohydrate

Gangioside

(Ceramide + a complex carbohydrate)

Page 19: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Isoprenoids & the Sterol Family

Isoprenoids are derived from isopentenyl-PP (related to 5-carbon isoprene). Compounds include the terpenes, sterols and fat soluble vitamins.

Sterol Family:

Cholesterol: (C27) Parent molecule and a membrane component

Bile acid salts: (C24) Emulisfy fats for digestion

Adrenocortical Hormones & Progesterone: (C21) Communication

Sex Hormones: Male (C19) and Female (C18)

Page 20: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Cholesterol, C27

Page 21: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Bile acids, C24

Page 22: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

C21, C19 and C18

AdrenocorticalHormone

Sex Hormones

Male Female

Page 23: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Eicosanoids

ProstaglandinsProstacyclins, Thromboxanes,Leucotrienes,

Cis - - eicosatetraenoic acid

Page 24: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Eicosanoids

Page 25: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Eicosanoids

Page 26: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Lipid Aggregation

Lipids aggregate to form large non-covalent assemblies.

Micelles are spontaneously formed by fatty acids to provide stabilization in aqueous media.

Phospholipids spontaneously for lipid bilayers. The non-polar tails associate with each other and the polar heads interact with water.

Singer & Nicolson proposed the fluid-mosaic membrane model to incorporate proteins and provide functionality.

Page 27: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Tail (nonpolar) Head (Polar)

Similar structures

Page 28: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Soap Micelle (cross section)

Fatty acid salts

Non-polar inside; Polar outside

Page 29: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Lipid Biayer Cartoon

Phospho lipids

Non-polar inside; Polar surface

Page 30: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Space Filling Model

Close pack with saturated sidechains (less fluid)

Page 31: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Space Filling ModelPacking disrupted by unsaturated sidechains

(more fluid)

Page 32: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Liposome (Lipid vesicle)

Page 33: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Spontaneous formation of liposomes

Trapping Glycine inside of liposomes

Page 34: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Membrane Permeability

Low permeability for ions. Small non-polar molecules (O2, CO2, HOH) pass more easily.

Page 35: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Integral (a,b,c) and peripheral (d,e) Proteins

Page 36: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Bacteriorhodopsin ( strands)

Page 37: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Porin ( strands)

Permits free transport of small molecules.

Page 38: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition
Page 39: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Diagonal lines show hydrogen bonding between anti-parallel strands.

Non-polar residues are in yellow.

Page 40: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Protein Domain Anchor

Page 41: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Membrane Anchors

Mannose

NAcGlc

Page 42: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition
Page 43: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Glycophorin in red cells

Page 44: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Hydropathy Plot

Page 45: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition
Page 46: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Fluid Mosaic Model

Page 47: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Fluid Mosaic Model

Page 48: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Membrane Composition

Page 49: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Inner and Outer Leaflets

Page 50: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Membrane Diffusion

Membrane components are fluid.

The two sides are assymetric.

Page 51: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Phase Transition Temperature

Page 52: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition
Page 53: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Transition Temperatures

Page 54: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Fat Soluble Vitamins

Page 55: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Saturated

Page 56: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Unsaturated (cis)

Page 57: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Lipoproteins

Page 58: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

Endocytosis

Page 59: Chapter 12: Lipids and Cell Membranes Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition

End of Chapter 12

Copyright © 2007 by W. H. Freeman and Company

Berg • Tymoczko • Stryer

BiochemistrySixth Edition