chapter 8 p. 141-150. metabolism: sum of all chemical rxns in the body metabolic pathway: series...
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Chapter 8
p. 141-150
Metabolism: sum of all chemical rxns in the body
Metabolic Pathway: series of rxns catalyzed by specific enzymesCatabolic Pathways: energy-releasing
Usually by breaking down large molecules i.e.: cellular respiration
Anabolic Pathways: energy-consuming Usually by building macromolecules i.e.: protein synthesis
Energy: the capacity to cause change or rearrange a collection of matter
A) Kinetic Energy: energy of motion i.e. leg muscles pushing bicycle pedalsHeat/Thermal Energy: kinetic energy of
atomic movement B) Potential Energy: stored energy
i.e. water built up behind a damChemical Energy: potential energy stored
in molecules When broken down, gets released
On the platform,the diver hasmore potentialenergy.
Diving convertspotentialenergy to kinetic energy.
Climbing up convertskinetic energy ofmuscle movement topotential energy.
In the water, the diver has lesspotential energy.
The study of energy transformationsBased on open systems, or organisms that
transfer energy between self & surroundings
1st Law of Thermodynamics: Energy can be transferred and transformed but can not be created nor destroyed“Principle of Conservation”Energy is converted from 1 form to another
as it passes through open systems i.e.: chemical energy in food kinetic
energy for muscle contraction
2nd Law of Thermodynamics: Every energy transfer or transformation increases the entropy of the universeEntropy: measure of randomness or
disorder Every time energy is transformed, some of it is
converted to heat & escapes to the surroundings If a process increases entropy, it will occur
spontaneously (w/o energy input)
Chemical energy
Heat CO2
First law of thermodynamics Second law of thermodynamics
H2O
ΔG = G final state – G initial state
Final state has less free energy, then it is more stable
Systems will always try to move to more stable state
Chemical rxns at equilibrium are at their most stable state (ΔG is lowest)Can’t do any more work
Exergonic Rxns: net release of free energy ΔG is negative; rxns are
spontaneous Value of ΔG = amount of
work that can be performed Endergonic Rxns: absorb
free energy ΔG is positive; rxns are NOT
spontaneous Value of ΔG = amount of
energy required to drive the reaction
Living cells never exist at equilibrium Are “Open Systems”There is a constant flow of
materials into & out of a cellThe products of 1 rxn may
become the reactants of another rxn; wastes are expelled from the cell
Energy Coupling: the use of exergonic rxns to drive endergonic ones, using ATP i.e.: beating of cilia, pumping substances
across membranes, synthesizing polymers Adenosine Triphospahte (ATP):
ribose (sugar), adenine (nitrogenous base), 3 phosphate groups To release energy, one PO4 is removed by
hydrolysis Each PO4 is neg. charged & close together ΔG = -7.3 kcal/mol
This rxn may be coupled to endergonic ones to help them proceed
When ATP hydrolysis is coupled to another rxn, the removed PO4 is transferred to a reactant of an endergonic rxn“Phosphorylated” reactant is less stable
& thus more likely to react To regenerate ATP (replace the PO4),
use energy from exergonic rxns i.e. cellular respiration
Chapter 8
p. 150-159
Some rxns, although spontaneous, occur so slowly they can not be detected
Catalyst: a chemical compound that speeds up a rxn w/o being consumedEnzyme:
A protein catalyst Named for the rxn/substrate catalyzed Usually end in “-ase”
All chemical rxns involve breaking & forming bondsStarting molecules must contort to unstable
position; requires energy Activation Energy (EA): energy required
to start a rxn/contort the reactantsOften comes in form of heat from
surroundings (speeds up molecules, collide more often)
Transition State: point at which reactants absorb enough energy so bonds begin to break & form (“peak” of rxn)
Instead of heat, living cells use enzyme catalysts to overcome EA Heat denatures proteins & would speed up all
rxns Enzymes decrease EA, lowering amount
needed to reach transition state Substrate: reactant the enzyme acts upon
Very specific (I enzyme/substrate) Forms Enzyme-Substrate Complex w/ active
site of enzyme Active Site: region of enzyme to which
substrate binds Formed by few amino acids w/in the protein Induced Fit: brings substrate & enzyme in
perfect position to maximize catalysis
Substrates are held in place by weak interactions Hydrogen bonds, ionic bonds
Active Site & R-groups of amino acids decrease EA by: A) Holding substrate in proper position B) Contorting substrate into transition-state
conformation C) Providing microenvironment (pH, salinity, etc) D) Participating in rxn
Side chain of enzyme aa may briefly bond to substrate Rate often depends on:
1) Amount of Substrate Saturated Rxn: when all enzyme molecules are being
used 2) Amount of Enzyme
If rxn is saturated, can increase rate of reaction
Temperature: up to a point, an increase in temp will increase enzyme activity If too high, bonds are broken & protein will
denature Each enzyme has its own “optimal temp”
pH: most enzymes work best at a pH of 6-8 If too acidic/basic protein will denature Some enzymes are designed to work in extreme
pH conditions Cofactor: a non-protein “helper” bound to
an enzyme (i.e. zinc, iron, copper) Performs a variety of functions Coenzyme: an organic cofactor (i.e.vitamins)
Inhibitor: selectively inhibits the action of a specific enzyme If binds covalently, may be irreversible
Competitive Inhibitor: resembles substrate & blocks it from entering active siteCan be overcome by increasing substrate
concentration Noncompetitive Inhibitor: binds to
enzyme, causing it to change shapeSubstrate no longer fits in active siteCan be overcome by increasing enzyme
concentration
Enzyme activity has to be constantly and specifically regulated
Allosteric Regulation: activity at one site of a protein can alter the activity at another site (i.e. the active site) Enzymes are composed of 2+ polypeptides,
each with its own active site Enzymes are constantly switching from “active”
to “inactive” states Allosteric Activation: uses an “activator”
to hold the complex into the active state Allosteric Inhibition: Uses an “inhibitor”
to hold the complex into the inactive state The allosteric molecule will affect each active
site on the enzyme
When a pathway is shut off b/c the end product binds to and inhibits an enzymePrevents the cell
from wasting resources
Is a type of allosteric inhibition