cisco digital catapult
TRANSCRIPT
@rdmpage
http://iphylo.blogspot.com
What is digitisation?
specimen
metadata
metadata
DNA barcodes(digital code of life)
>COI Memphis moruus 1069855AACTTTATATTTTATTTTTGGAATTTGAGCAGGAATATTAGGAACTTCATTAAGTCTTATTATCCGAACTGAACTTGGTAATCCAGGATTTTTAATTGGAGATGATCAAATTTATAATACTATTGTTACAGCTCATGCATTTATTATAATTTTTTTTATAGTTATACCTATTATAATTGGAGGTTTCGGTAACTGATTAATTCCATTAATACTTGGAGCCCCCGATATAGCTTTCCCCCGCATAAATAATATAAGATTTTGACTTCTCCCCCCCTCTTTAATTCTCTTAATTTCAAGTAGAATTGTAGAAAATGGAGCAGGAACAGGATGAACAGTTTACCCCCCCCTATCATCAAATATTGCTCATGGAGGATCATCAGTTGATTTAGCTATTTTTTCTTTACATTTAGCAGGAATTTCATCAATCTTAGGAGCTATTAATTTTATCACAACAATTATTAATATACGAGTAAATAATATATCTTATGATCAAATACCTTTATTTGTTTGATCTGTAGGTATTACTGCCTTACTTCTATTACTTTCTCTACCAGTTTTAGCTGGAGCTATTACTATATTATTAACTGACCGAAATTTAAATACTTCATTTTTTGACCCTGCTGGAGGAGGTGATCCTATTCTTTATCAACATTTATTT
http://www.dnabarcode.net/20141105/qrpub/inspector/home
BHL page image (more detial in litertaure)
ALL THE THINGS
DIGITISE
“Joined-up” digitisationliterature, specimens, sequences
Why digitise?
https://www.flickr.com/photos/nhm_beetle_id/15930177695
GBIF.org 500+ million records
http://devpost.com/software/gbif-soundscape
@peterneish Ben Raymond
http://devpost.com/software/gbif-data-and-3d-printing
Ben Raymond
Intellectual Property:Ownership to ensure it is open
Collections CC 0 and CC-BY Literature CC-BY-SA-NC or paywall
JSTOR Global plantspaywall
Linking
strings things
PMID:948206
http://biostor.org/reference/102054
http://data.gbif.org/occurrences/215921922/
BHL and GBIF as biomedical databases
http://iphylo.blogspot.co.uk/2012/03/bhl-and-gbif-as-biomedical-databases.html
PubMed(disease)
BioStor(publication)
GBIF(specimen)
ORCID(person)
DOI(publication)
LSID(plant name)
Find my papers that published new species
@SandyKnapp
ORCID(person)
DOI(publication)
LSID(plant name)
#Iamataxonomist
http://events.labs.crossref.org/events/types/WikipediaCitation
Reality check…
This exists(sort of)
This, not so much
• Digitise all the things
• Link all the things
• Build knowledge graph