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Saccharomyces GENOME DATABASE Integration of Macromolecular Complex Data into the Saccharomyces Genome Database International Biocuration Conference 2019 Cambridge, UK Wong E et al (2019). PMID: 30715277 Poster # 121

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Page 1: Complex Data into the Saccharomyces Integration of ... · Saccharomyces GENOME DATABASE Acknowledgements Funding: This work is supported by a grant from the National Human Genome

SaccharomycesGENOME DATABASE

Integration of Macromolecular Complex Data into the

Saccharomyces Genome Database

International Biocuration Conference 2019

Cambridge, UK

Wong E et al (2019). PMID: 30715277Poster # 121

Page 2: Complex Data into the Saccharomyces Integration of ... · Saccharomyces GENOME DATABASE Acknowledgements Funding: This work is supported by a grant from the National Human Genome

SaccharomycesGENOME DATABASE

What is a macromolecular complex?

From NIH Image Gallary

Page 3: Complex Data into the Saccharomyces Integration of ... · Saccharomyces GENOME DATABASE Acknowledgements Funding: This work is supported by a grant from the National Human Genome

SaccharomycesGENOME DATABASE

Data schema

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Indexed/Searchable

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Page 4: Complex Data into the Saccharomyces Integration of ... · Saccharomyces GENOME DATABASE Acknowledgements Funding: This work is supported by a grant from the National Human Genome

SaccharomycesGENOME DATABASE

Connecting Datatypes

Page 5: Complex Data into the Saccharomyces Integration of ... · Saccharomyces GENOME DATABASE Acknowledgements Funding: This work is supported by a grant from the National Human Genome

SaccharomycesGENOME DATABASE

Future work

Complex Portal

https://academic.oup.com/database/article/doi/10.1093/database/baz008/5306168Poster #121

Page 6: Complex Data into the Saccharomyces Integration of ... · Saccharomyces GENOME DATABASE Acknowledgements Funding: This work is supported by a grant from the National Human Genome

SaccharomycesGENOME DATABASE

Acknowledgements

Funding: This work is supported by a grant from the National Human Genome Research Institute at the United States National Institutes of Health (U41 HG001315).

Felix Gondwe

Saccharomyces Genome Database

J. Michael CherryStacia EngelSuzi AleksanderBarbara DunnFelix GondweSagar JhaKalpana KarraStuart MiyasatoRob Nash

EMBL-EBI

Sandra OrchardBirgit Meldal – poster #29Livia Perfetto

Other Cherry lab posters :

#127#162 #172

Idan GabdankSuzi Aleksander

Patrick NgMatt SimisonMarek SkrzypekAjay Shrivatsav VPShuai Weng

Former:Gail BinkleyMaria CostanzoJanos Demeter

#135

Yunhai Luo

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Saccharomyces Genome Resequencing Project: User Manual · 1.1 Overview of project and data The project was a collaboration between Richard Durbin’s group at the Well-come Trust

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Saccharomyces Genome Database (SGD) provides secondary ... · ANNOTATION GOALS AND GUIDELINES The Saccharomyces Genome Database’s (SGD’s) (1–5) goal of annotating yeast genes