Datasets2Tools – Enriching DataMed with Canned Analyses

Denis Torre

BD2K All Hands MeetingNovember 29th, 2016

Extracting knowledge from biomedical data

Dataset-Tool Associations

Extract Knowledge

Biomedical repositories Tool Repositories

Computational Tools

Connecting tools to data

Biomedical datasets

?

Computational tools

The Canned Analysis

Biomedical datasets Computational tools

Canned Analysis

The Canned Analysis

Canned Analysis

A new type of digital object:

• Dataset URL

• Tool URL

• Canned Analysis URL

• Additional: analysis description and metadata

The Canned Analysis

Canned Analysis

A new type of digital object:

• Metadata structure is independent of data or tool type

• Indexed and easily retrieved in a relational database

• Sharable with an URL or icon

Datasets2Tools Availability

Datasets2Tools Database

Chrome Browser

Extension

Website

API

User

Enriching DataMed with Canned Analyses

Extension – Browse Canned Analyses

Accessing Canned Analysis Results

Accessing Canned Analysis Metadata

Sharing Canned Analyses

Tool Information

Enriching GEO with Canned Analyses

Enriching LINCS with Canned Analyses

Enriching LINCS with Canned Analyses

Enriching NURSA with Canned Analyses

Enriching NURSA with Canned Analyses

Thank you

The Datasets2Tools Database