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Datasets2Tools – Enriching DataMed with Canned Analyses
Denis Torre
BD2K All Hands MeetingNovember 29th, 2016
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Extracting knowledge from biomedical data
Dataset-Tool Associations
Extract Knowledge
Biomedical repositories Tool Repositories
Computational Tools
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Connecting tools to data
Biomedical datasets
?
Computational tools
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The Canned Analysis
Biomedical datasets Computational tools
Canned Analysis
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The Canned Analysis
Canned Analysis
A new type of digital object:
• Dataset URL
• Tool URL
• Canned Analysis URL
• Additional: analysis description and metadata
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The Canned Analysis
Canned Analysis
A new type of digital object:
• Metadata structure is independent of data or tool type
• Indexed and easily retrieved in a relational database
• Sharable with an URL or icon
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Datasets2Tools Availability
Datasets2Tools Database
Chrome Browser
Extension
Website
API
User
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Enriching DataMed with Canned Analyses
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Extension – Browse Canned Analyses
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Accessing Canned Analysis Results
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Accessing Canned Analysis Metadata
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Sharing Canned Analyses
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Tool Information
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Enriching GEO with Canned Analyses
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Enriching LINCS with Canned Analyses
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Enriching LINCS with Canned Analyses
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Enriching NURSA with Canned Analyses
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Enriching NURSA with Canned Analyses
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Thank you
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The Datasets2Tools Database