digital tools for academic research

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Digital Tools for Academic Research Sidiropoulos John www.organognosi.com email: [email protected] twitter: @organognosi mobile: +44 7510 570990

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Digital Tools for Academic Research

Sidiropoulos Johnwww.organognosi.comemail: [email protected]: @organognosimobile: +44 7510 570990

The Problem

I do not remember where I have read this.

Where is this file in my hard drive?I cannot find it!

I spend too much time trying toorganize my ebooks and papers.

I cannot find my notes from the paper I readlast week.

The Solution:Digital Tools for Academic Research

Hypertext

Links

Wikis

Additional/alternative solutionsTagsSearch enginesDatabases

Hypertext

Hypertext is a text structure that cannotbe conveniently printed. (As We WillThink - Nelson: 252)The biggest and most well knownhypertext system is the World WideWeb (WWW).

Links

The defining characteristic of hypertext

Immediate access to information or data

Effective organizational tool

Kinds of Links

Between different documentsBetween different sections of the samedocumentBetween text files and media files

Links between Documents

The references in a book or paper can be livelinks to the original sourcese.g. Sorites Paradox and Vagueness - Sidiropoulos

Links to local files - e.g. A Critiqueof Deflationism - Gupta: 286URL: x-devonthink-item://644047E6-B393-466E-B4E9-980AB5201172?page=4

Links to Google Bookse.g. Vagueness - Willimason: 35URL: http://books.google.co.uk/books?id=9ZEB6JNAkKsC&pg=PA35

Internal Document Links

Clickable table of contentse.g. Hypertext marks in LaTeX: 2

Clickable indexe.g. Hypertext marks in LaTeX:448

Clickable endnotes/footnotese.g. Sorites Paradox and Vagueness -Sidiropoulos: 5

Clickable references to specificPDF pages e.g. Sorites Paradoxand Vagueness - Sidiropoulos: 11

Links to Audio and Video Files

TunesLinker - http://bit.ly/14qlx4k

Links to specific filese.g. Night Bird - Deep Forest

Links to specific time pointse.g. Hypertext and Computer-Augmented-Thought - 11:19

Ways of Writing Hypertext

HTML (HyperText Markup Language)

Wikis

LaTeXe.g. Sorites and Vagueness - Sidiropoulos

Creation of links using AppleScripte.g. Create MediaWiki and RTF links toiPhoto pictures

Wikis

The easiest way to create hypertextDemo MediaWiki

Links to other pages - e.g. [[Vagueness]]Markup syntax: MediaWiki Cheat Sheet

Wiki programsMediaWikiConnectedTextVoodooPadWikispaces

MediaWiki - Tips

For each book, article that I read Icreate a separate wiki page

Name template: @Title - Surname

For each important concept I create aseparate wiki page.

Name template: Concept and specifier

I insert pertinent tags or categories to thewiki pages.

I try to write anything new that I learn.My wikis are the personal repositoriesof my knowledge.

Advantages of Hypertext

Every source is just one click away!

You can organize your sources, notes andthoughts in an associative manner whichcan preserve the context.

Facilitates the creation of new connections.

Facilitates analysis - modular organizationof content (imitation of index cards).

Facilitates synthesis - creation ofdynamic documents (transclusion).

Problems with Hypertext

The links can break.

It requires the learning of new skills(new programs, markup languages)

New dangers (security, backup)

Digitization of source material

Copyright (open access movement)

My Favorite Mac Applications

for reading and annotating documents:Skim (PDF), Clearview (ePub, chm)

for bibliography management: BibDesk

for writing: Scrivener, Scapple, LaTeX

for notes management: MediaWiki

for documents management:DEVONthink (PDFs), Calibre (ePub, chm)

for automating my workflow:Script Debugger

OrganoGnosi

http://www.organognosi.com

Development of custom scripts andapplications

Private tuitions