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RESEARCH POSTER PRESENTATION DESIGN © 2011 www.PosterPresentations.com DNA EXTRACTION FROM SOIL IN THE FRAME WORK OF GENDER-SPECIFIC ENVIRONMENTAL EXPOSURE TO Coccidioides spp. Coccidioidomycosis, also known as valley fever, is an infection caused by inhalation of Coccidioides spp. spores. Coccidioides spp. are dimorphic, soil-dwelling fungi, known to cause a broad spectrum of disease ranging from a mild febrile illness to severe pulmonary manifestations or disseminated disease. The genus Coccidioides is comprised of two genetically distinct species: Coccidioides immitis and C. posadasii. These two species cause similar clinical symptoms; however, they are present in different geographic regions. C. immitis is found in central and southern California, with the San Joaquin Valley being the region of greatest endemicity. The most concentrated region for C. posadasii is in Arizona and sporadic sites in southern Utah and Nevada, Oregon, and El Paso, TX. Beyond the USA, C. posadasii is present in parts of Mexico and Central and South America. Members of our group has been working for the last year in identifying the epidemiologic and clinical/radiographical presentations of Coccidiomycosis in the Permian Basin. This is of great concern to women of childbearing age that become infected prior to conception, as the risk of dissemination increases during pregnancy and requires increased vigilance. 1 Introduction Irene Schwaninger 1 , Stacy Martinez 1 , Maira Carrillo 2 , Natalia Schlabritz-Loutsevitch 2 and Javier Flores-Guardado 3 1 Office of Medical Education, TTUHSC at the PB 2 Department of Obstetrics and Gynecology and 3 Department of Internal Medicine TTUHSC at the Permian Basin The goal of this study was to evaluate the soil microbiome, including those of Coccidiodes spp. in soil from the counties served by Texas Tech University Health Sciences Center at the Permian Basin. OBJECTIVES Six soil samples were collected at Loop 250 and Lamesa Rd, Midland, TX Midland County. Using an N-99 respirator and sterile techniques, approximately 10 grams of soil at a depth of 10 inches was collected from an established Prairie Dog colony. DNA was then isolated using Mo-Bio PowerLyzer Power Soil kit (Carlsbad, CA, U.S.A.). Methods and Materials RESULTS CONCLUSIONS The DNA extraction from the soil presents a more challenging methodology compared to human tissue DNA extraction. The soil pH and matrix should be taken in consideration during extraction process, which may require additional processing. While the DNA controls worked for the Q-RT PCR, all soil samples were negative for the gene used as a known control. REFERENCES 1 Arch Pathol Lab Med. 2007; 131,:652-655. Disseminated Coccidioidomycosis in Pregnancy. Hooper, JE, Lu, Q, Pepkowitz, S. 2 Litvintseva et al. 2015. Investigating the expanding geographic range of coccidioides [PowerPoint Slides]. ACKNOWLEDGEMENT This study was supported by the Regional Dean funds to Dr. Guardado. Additional support and funding was provided by the Department of Obstetrics and Gynecology TTUHSC, Permian Basin. From: Litvintseva et al, CID 2014 2 From: Litvintseva et al, CID 2014 2 Real- time Quantitation PCR was performed on the isolated DNA samples. The samples were quantified using a Standard Curve and detected utilizing FastStart Essential DNA Green Master (Roche, Indianapolis, Indiana, U.S.A.). Figure 2a) This is the amplification curve for sample 1. The negative sample is a bit noisy but does not pass the minimal EPF to be considered positive. The amplification is late in the cycle indicating how little of coccidiosis’s species gene is in the sample. Figure 2b) This is the melting peak for sample 1. The expected melting temperature the product is about 85˚C. The sample has a melting temperature of about 85˚C showing this is our expected product. Figure 1 shows the Standard Curve 10- Fold Change of the Coccidioides immitus control (Vircell, Granada, Spain) . The dilutions were 1:1 (60,000 copies/ rxn), 1:10 (6,000 copies/ rxn), 1:100 (600 copies/ rxn), and 1:1000 (6 copies / rxn). A B

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DNA EXTRACTION FROM SOIL IN THE FRAME WORK OF GENDER-SPECIFIC ENVIRONMENTAL EXPOSURE TO

Coccidioides spp.

Coccidioidomycosis, also known as valley fever, is an

infection caused by inhalation of Coccidioides spp. spores.

Coccidioides spp. are dimorphic, soil-dwelling fungi, known

to cause a broad spectrum of disease ranging from a mild

febrile illness to severe pulmonary manifestations or

disseminated disease.

The genus Coccidioides is comprised of two genetically

distinct species: Coccidioides immitis and C. posadasii.

These two species cause similar clinical symptoms;

however, they are present in different geographic regions.

C. immitis is found in central and southern California, with

the San Joaquin Valley being the region of greatest

endemicity.

The most concentrated region for C. posadasii is in Arizona

and sporadic sites in southern Utah and Nevada, Oregon,

and El Paso, TX. Beyond the USA, C. posadasii is present in

parts of Mexico and Central and South America. Members of

our group has been working for the last year in identifying

the epidemiologic and clinical/radiographical presentations

of Coccidiomycosis in the Permian Basin.

This is of great concern to women of childbearing age that

become infected prior to conception, as the risk of

dissemination increases during pregnancy and requires

increased vigilance.1

Introduction

Irene Schwaninger1, Stacy Martinez1, Maira Carrillo2, Natalia Schlabritz-Loutsevitch2 and Javier Flores-Guardado 3

1 Office of Medical Education, TTUHSC at the PB 2 Department of Obstetrics and Gynecology and 3 Department of Internal Medicine TTUHSC at the Permian Basin

The goal of this study was to evaluate the soil

microbiome, including those of Coccidiodes spp. in soil

from the counties served by Texas Tech University Health

Sciences Center at the Permian Basin.

OBJECTIVES

Six soil samples were collected at Loop 250 and Lamesa

Rd, Midland, TX Midland County. Using an N-99 respirator

and sterile techniques, approximately 10 grams of soil at

a depth of 10 inches was collected from an established

Prairie Dog colony. DNA was then isolated using Mo-Bio

PowerLyzer Power Soil kit (Carlsbad, CA, U.S.A.).

Methods and Materials

RESULTS

CONCLUSIONS

The DNA extraction from the soil presents a more

challenging methodology compared to human tissue

DNA extraction.

The soil pH and matrix should be taken in

consideration during extraction process, which may

require additional processing.

While the DNA controls worked for the Q-RT PCR, all

soil samples were negative for the gene used as a

known control. REFERENCES

1 Arch Pathol Lab Med. 2007; 131,:652-655. Disseminated Coccidioidomycosis in Pregnancy.

Hooper, JE, Lu, Q, Pepkowitz, S.

2 Litvintseva et al. 2015. Investigating the expanding geographic range of coccidioides

[PowerPoint Slides].

ACKNOWLEDGEMENT

This study was supported by the Regional Dean funds to Dr. Guardado.

Additional support and funding was provided by the Department of Obstetrics and Gynecology

TTUHSC, Permian Basin.

From: Litvintseva et al, CID 2014 2

From: Litvintseva et al, CID 2014 2

Real- time Quantitation PCR was performed on the

isolated DNA samples. The samples were quantified

using a Standard Curve and detected utilizing FastStart

Essential DNA Green Master (Roche, Indianapolis,

Indiana, U.S.A.).

Figure 2a) This is the amplification curve for sample 1. The negative sample is a bit noisy but does not pass the minimal EPF to be considered positive. The amplification is late in the cycle indicating how little of coccidiosis’s species gene is in the sample.

Figure 2b) This is the melting peak for sample 1. The expected melting temperature the product is about 85˚C. The sample has a melting temperature of about 85˚C showing this is our expected product.

Figure 1 shows the Standard Curve 10- Fold Change of the Coccidioides immitus control (Vircell, Granada, Spain) . The dilutions were 1:1 (60,000 copies/ rxn), 1:10 (6,000 copies/ rxn), 1:100 (600 copies/ rxn), and 1:1000 (6 copies / rxn).

A B