Download - Use of species and specimen data … or advantages in sharing data Dora Canhos ([email protected])
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Some assumptions...
Scientific progress depends on open access to data and information
Information and communication technology are provoking an evolution on scientific thinking and organization
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Data sharing
data
Analysis / Synthesis
Publications
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What happens to the data?
data
Analysis / Synthesis
Publication
Time
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The data “pathway”...
data
PublicationsReportsThesisWeb Pages
Storage
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Scientific publications
• Are vital for scientific progress• They reflect the vision of the authors• Facts interpreted at a certain time
If the data is to be reinterpreted by the author or by future generations it has to be available
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data
Internet
Interface A
Interface B
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More “beliefs” ...
Data and information that is freely and openly accessible promotes a greater return of the public investment, stimulates innovation and informed decisions
The integration of data from different disciplines, geographic spaces, analyzed by researchers also from different fields of knowledge and of different cultural origin, opens the way to new questions and to innovation
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Building the knowlege base on biodiversity
• Collective, multi and inter-disciplinary• Requires an environment for global
cooperation• Depends on a comparative base of data and
knowledge
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How to promote data sharing?
• Cultural barriers (internet, informatics, …)• Technological limitations (interoperability, archiving, …)• Legal impediments (biosafety, access to biodiversity, …)
It doesn’t only depend on the “will” to share data....• Must be organized: data models, standards, protocols...• Must be feasible (“doable”)• Must be planned: adequate resources, expertise,
infrastructure
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Use of data
Indicators: use, content
Identifying data / information gaps
Data cleaning
Analysis
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BIOTA/FAPESPBIOTA/FAPESP
The Biodiversity Virtual The Biodiversity Virtual
InstituteInstitute
Overall aim: inventory and characterize the biodiversity of the State of São Paulo, and define the mechanisms for its conservation and sustainable use.
http://www.biota.org.br
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Atlas SinBiota
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The main goal of
speciesLink was to
build a distributed
system integrating
several biological
collections and
making their primary
data available on the
Internet.
speciesLinkDistributed Information System for Biological Collections
http://splink.cria.org.br
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DiGIR Portal
virtualcatalog
users queries
Collections (data providers)
HTTP / XML
SOAP
DiGIRProvider
DiGIRProvider
DiGIRProvider
HTTP / XML
RegionalServer
DiGIRProvider
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locality data
precipitation
topography
distributional prediction
temperature
alg
ori
thm
locality data
precipitation
topography
distributional prediction
temperature
alg
ori
thm
locality data
precipitation
topography
distributional prediction
temperature
alg
ori
thm
locality data
precipitation
topography
distributional prediction
temperature
alg
ori
thm
occurrence data
temperature
rainfall
….
Potential distribution
modeling
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Byrsonima subterranea Brad. & Mark. (Malpighiaceae)
Espécie considerada extinta pela lista da flora ameaçada de extinção no estado de São Paulo (SMA-SP 1997)
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Byrsonima subterraneaByrsonima subterranea
Somente um registro de ocorrência
Inclusão na lista de espécies ameaçadas do Estado de São Paulo
Novo registro de ocorrência na Estação Ecológica de Assis
Uso da modelagem para auxiliar na localização da espécie
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Modelagem de nicho fundamental para espécies com distribuição restrita ou com poucos pontos de amostragem
Estação Ecológica de Assis – SP
Dra Giselda Durigan
Cerrado e Floresta Estacional
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Precipitação Média Anual
Tem
per
atu
ra M
édia
An
ual
Ponto original da espécie
Ponto próximo ao ponto original
Medida da distância no
espaço ambiental
Tomar a medida da distância ambiental (D) para todos os pontos da região de estudo
Ponto de orígem: Floresta Estadual de Asssis – IF
São Paulo
Modelagem de nicho fundamental para espécies com distribuição restrita ou com poucos pontos de amostragem
Espécie considerada provavelmente extinta - lista da flora ameaçada de exitnção no estado de São Paulo (SMA-SP 1997)
Byrsonima subterranea Brad. & Mark. (Malpighiaceae)
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Área cinza = baixa similaridade ambiental
Área azul = alta similaridade ambiental
Fragmentos de Cerrado
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Corte do Modelo utilizando dados de Corte do Modelo utilizando dados de solosolo
Facilitar o trabalho de campo diminuindo a área de busca
Registro de mais quatro ocorrência da espécie
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Possíveis ProjeçõesG
eogr
afia
E
colo
gia
Pontos de Ocorrência
Algoritmo
Precipitação
Tem
pera
tura
Modelo do Nicho Ecológico
Previsão daDistribuição
Nativa
Projeção sobreClima Modificado
Projeçãosobre climaalterado
Previsão deInvasão
Projeção sobre outra região
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Distribuição potencial no presente
no 1% aumento anual de CO2
0.5% aumento anual de CO2
Modelagem para espécies arbóreas do cerrado: presente e 2 cenários futuros considerando mudanças climáticas
hotspot
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Crotalaria pallida (FABACEAE)
Região Nativa
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Crotalaria pallida (FABACEAE)
Área de Invasão
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Scenario involving the use of standards and protocolsScenario involving the use of standards and protocols
descriptivedata
nomenclature taxonomy
modeling
Data quality
maps
primary data
educationresearch
Decision making
Biological collection
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Building data infrastructure
Is a collective effort.....